pycom15g26600

Belongs to the CRISP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0019556
Physical Location & Seq
Reverse (-)
21535417 .. 21535944
528 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g26600.1

Sequence Viewer

Length: 528 bp
ATGACATCAATGGGAAGCCGAGTAACTATTTTAGCAACTATCGTATGCATTTTCATTTGTCTTGAGGCCGCACAAGCTCGTCATCGTTTTCGCCGTGCTCCAACAGCGAACCCTCATGATTTTCTGAAGGTTCACAACAATTTACGACGGAAAATTGGCCTACCGCCCTTGGTGTGGGACGAAAACCTAGCAACGGTTGCTAGGATTTACACGAAACAGAGAGCGAGCATGGACTGCAGGATGGTACACTCGACGGGGCCTTACGGGGAGAACATCTTCTGGGGCGGCGGGAATCAACCGTGGGGGGCGAGGTTTGCGGCGAAGTCGTGGTCTCACGAGAATTTGTTCTATGATTACCAGACGGATAGTTGTAAAACCGGGCAGATGTGTGGGCATTATACGCAAATGGTGTGGAAGGACACGAAGCGTCTGGGTTGTGCACGAGAGGTTTGCAGAAATGGAGCTGGGGAGCTCATCATATGTAACTATGATCCGCCAGGAAATTGGGTTGGAGAGAAACCCTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04626 map04016 map04075 map04626
Pfam Domains
Protein Families
CAP

Protein Analysis

176

Amino Acids

19.92

Weight (kDa)

9.2

Isoelectric Point (pI)

31.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAP PF00188 42 - 163 2.3e-21 Cysteine-rich secretory protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019556)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G09590 AT5G02730
malus_domestica MD02G1191600.v1.1 MD15G1302700.v1.1
prunus_persica Prupe.6G214000_v2.0.a1
pyrus_communis pycom02g15640 pycom15g26600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 6 cut(s) 69, 164, 285, 288, 317, 494
AclWI GGATC 1 cut(s) 485
AcsI RAATTY 1 cut(s) 340
AcuI CTGAAG 1 cut(s) 146
AfaI GTAC 1 cut(s) 246
AfiI CCNNNNNNNGG 2 cut(s) 174, 193
AjnI CCWGG 1 cut(s) 496
AluBI AGCT 3 cut(s) 77, 464, 472
AluI AGCT 3 cut(s) 77, 464, 472
Alw21I GWGCWC 3 cut(s) 100, 442, 474
Alw26I GTCTC 1 cut(s) 336
Alw44I GTGCAC 1 cut(s) 438
AlwI GGATC 1 cut(s) 485
AoxI GGCC 3 cut(s) 66, 157, 257
ApaLI GTGCAC 1 cut(s) 438
ApoI RAATTY 1 cut(s) 340
ArsI GACNNNNNNTTYG 2 cut(s) 314, 346
Asp700I GAANNNNTTC 2 cut(s) 275, 344
AspS9I GGNCC 1 cut(s) 257
AsuC2I CCSGG 1 cut(s) 379
BaeGI GKGCMC 1 cut(s) 442
BanII GRGCYC 1 cut(s) 474
BauI CACGAG 2 cut(s) 335, 441
Bbv12I GWGCWC 3 cut(s) 100, 442, 474
BccI CCATC 1 cut(s) 235
BceAI ACGGC 1 cut(s) 78
BcgI CGANNNNNNTGC 2 cut(s) 432, 466
BciT130I CCWGG 1 cut(s) 498
BcnI CCSGG 1 cut(s) 379
BcoDI GTCTC 1 cut(s) 336
BfaI CTAG 2 cut(s) 188, 201
BfmI CTRYAG 1 cut(s) 235
BisI GCNGC 3 cut(s) 69, 286, 318
BlsI GCNGC 3 cut(s) 70, 287, 319
Bme1390I CCNGG 2 cut(s) 379, 498
BmgT120I GGNCC 1 cut(s) 257
BmiI GGNNCC 1 cut(s) 258
BmrFI CCNGG 2 cut(s) 379, 498
BpuEI CTTGAG 1 cut(s) 83
BpuMI CCSGG 1 cut(s) 379
BsaI GGTCTC 1 cut(s) 336
BsaJI CCNNGG 2 cut(s) 168, 299
Bsc4I CCNNNNNNNGG 2 cut(s) 174, 193
BseBI CCWGG 1 cut(s) 498
BseDI CCNNGG 2 cut(s) 168, 299
BseGI GGATG 1 cut(s) 246
BseLI CCNNNNNNNGG 2 cut(s) 174, 193
BseSI GKGCMC 1 cut(s) 442
BseYI CCCAGC 1 cut(s) 464
BshFI GGCC 3 cut(s) 68, 159, 259
BsiHKAI GWGCWC 3 cut(s) 100, 442, 474
BsiSI CCGG 1 cut(s) 378
BslFI GGGAC 1 cut(s) 191
BslI CCNNNNNNNGG 2 cut(s) 174, 193
BsmAI GTCTC 1 cut(s) 336
BsmFI GGGAC 1 cut(s) 191
BsnI GGCC 3 cut(s) 68, 159, 259
Bso31I GGTCTC 1 cut(s) 336
Bsp1286I GDGCHC 3 cut(s) 100, 442, 474
Bsp143I GATC 1 cut(s) 490
BspACI CCGC 6 cut(s) 69, 164, 285, 288, 317, 494
BspANI GGCC 3 cut(s) 68, 159, 259
BspHI TCATGA 1 cut(s) 115
BspLI GGNNCC 1 cut(s) 258
BspMAI CTGCAG 1 cut(s) 239
BspPI GGATC 1 cut(s) 485
BspTNI GGTCTC 1 cut(s) 336
BssECI CCNNGG 2 cut(s) 168, 299
BssMI GATC 1 cut(s) 490
BssSI CACGAG 2 cut(s) 335, 441
BssT1I CCWWGG 1 cut(s) 168
Bst2BI CACGAG 2 cut(s) 335, 441
Bst2UI CCWGG 1 cut(s) 498
Bst4CI ACNGT 2 cut(s) 196, 300
BstAPI GCANNNNNTGC 2 cut(s) 197, 234
BstC8I GCNNGC 1 cut(s) 226
BstDSI CCRYGG 1 cut(s) 299
BstF5I GGATG 1 cut(s) 246
BstKTI GATC 1 cut(s) 493
BstMAI GTCTC 1 cut(s) 336
BstMBI GATC 1 cut(s) 490
BstMWI GCNNNNNNNGC 6 cut(s) 74, 104, 197, 234, 314, 400
BstNI CCWGG 1 cut(s) 498
BstSCI CCNGG 2 cut(s) 377, 496
BstSFI CTRYAG 1 cut(s) 235
BstSLI GKGCMC 1 cut(s) 442
BstXI CCANNNNNNTGG 1 cut(s) 504
BsuRI GGCC 3 cut(s) 68, 159, 259
BtgI CCRYGG 1 cut(s) 299
BtsCI GGATG 1 cut(s) 246
Cac8I GCNNGC 1 cut(s) 226
CciI TCATGA 1 cut(s) 115
Cfr13I GGNCC 1 cut(s) 257
CseI GACGC 1 cut(s) 416
Csp6I GTAC 1 cut(s) 245
CspCI CAANNNNNGTGG 2 cut(s) 392, 427
CviAII CATG 2 cut(s) 116, 229
CviJI RGCY 7 cut(s) 18, 68, 77, 159, 259, 464, 472
CviKI_1 RGCY 7 cut(s) 18, 68, 77, 159, 259, 464, 472
CviQI GTAC 1 cut(s) 245
DpnI GATC 1 cut(s) 492
DpnII GATC 1 cut(s) 490
EciI GGCGGA 1 cut(s) 483
Ecl136II GAGCTC 1 cut(s) 472
Eco130I CCWWGG 1 cut(s) 168
Eco24I GRGCYC 1 cut(s) 474
Eco31I GGTCTC 1 cut(s) 336
Eco53kI GAGCTC 1 cut(s) 472
Eco57I CTGAAG 1 cut(s) 146
EcoICRI GAGCTC 1 cut(s) 472
EcoO109I RGGNCCY 1 cut(s) 257
EcoRII CCWGG 1 cut(s) 496
EcoT14I CCWWGG 1 cut(s) 168
EcoT22I ATGCAT 1 cut(s) 50
EcoT38I GRGCYC 1 cut(s) 474
ErhI CCWWGG 1 cut(s) 168
FaeI CATG 2 cut(s) 119, 232
FaiI YATR 8 cut(s) 46, 117, 230, 351, 399, 479, 481, 489
FaqI GGGAC 1 cut(s) 191
FatI CATG 2 cut(s) 115, 228
FauI CCCGC 1 cut(s) 281
FauNDI CATATG 1 cut(s) 479
Fnu4HI GCNGC 3 cut(s) 69, 286, 318
FokI GGATG 1 cut(s) 253
FriOI GRGCYC 1 cut(s) 474
Fsp4HI GCNGC 3 cut(s) 69, 286, 318
FspBI CTAG 2 cut(s) 188, 201
GluI GCNGC 3 cut(s) 69, 286, 318
GsaI CCCAGC 1 cut(s) 468
HaeIII GGCC 3 cut(s) 68, 159, 259
HapII CCGG 1 cut(s) 378
HgaI GACGC 1 cut(s) 416
Hin1II CATG 2 cut(s) 119, 232
HinfI GANTC 1 cut(s) 292
HpaII CCGG 1 cut(s) 378
Hpy166II GTNNAC 3 cut(s) 133, 247, 440
Hpy188I TCNGA 1 cut(s) 126
Hpy188III TCNNGA 3 cut(s) 62, 116, 335
Hpy8I GTNNAC 3 cut(s) 133, 247, 440
Hpy99I CGWCG 2 cut(s) 150, 256
HpyAV CCTTC 2 cut(s) 121, 409
HpyCH4III ACNGT 2 cut(s) 196, 300
HpyCH4V TGCA 4 cut(s) 48, 237, 440, 453
HpyF10VI GCNNNNNNNGC 6 cut(s) 74, 104, 197, 234, 314, 400
Hsp92II CATG 2 cut(s) 119, 232
Kzo9I GATC 1 cut(s) 490
LmnI GCTCC 3 cut(s) 103, 461, 469
LpnPI CCDG 8 cut(s) 223, 265, 371, 391, 416, 450, 483, 510
MaeI CTAG 2 cut(s) 188, 201
MaeIII GTNAC 2 cut(s) 22, 482
MalI GATC 1 cut(s) 492
MboI GATC 1 cut(s) 490
MboII GAAGA 1 cut(s) 268
MhlI GDGCHC 3 cut(s) 100, 442, 474
MluCI AATT 4 cut(s) 139, 153, 340, 502
MmeI TCCRAC 2 cut(s) 125, 490
MnlI CCTC 4 cut(s) 58, 123, 303, 439
Mph1103I ATGCAT 1 cut(s) 50
MroXI GAANNNNTTC 2 cut(s) 275, 344
MspI CCGG 1 cut(s) 378
MspR9I CCNGG 2 cut(s) 379, 498
MvaI CCWGG 1 cut(s) 498
MwoI GCNNNNNNNGC 6 cut(s) 74, 104, 197, 234, 314, 400
NciI CCSGG 1 cut(s) 379
NdeI CATATG 1 cut(s) 479
NdeII GATC 1 cut(s) 490
NlaIII CATG 2 cut(s) 119, 232
NlaIV GGNNCC 1 cut(s) 258
NmeAIII GCCGAG 1 cut(s) 44
NsiI ATGCAT 1 cut(s) 50
PagI TCATGA 1 cut(s) 115
PcsI WCGNNNNNNNCGW 1 cut(s) 91
PdmI GAANNNNTTC 2 cut(s) 275, 344
PfeI GAWTC 1 cut(s) 292
PkrI GCNGC 3 cut(s) 70, 287, 319
Psp124BI GAGCTC 1 cut(s) 474
Psp6I CCWGG 1 cut(s) 496
PspFI CCCAGC 1 cut(s) 464
PspGI CCWGG 1 cut(s) 496
PspN4I GGNNCC 1 cut(s) 258
PspPI GGNCC 1 cut(s) 257
PstI CTGCAG 1 cut(s) 239
RsaI GTAC 1 cut(s) 246
RsaNI GTAC 1 cut(s) 245
SacI GAGCTC 1 cut(s) 474
SatI GCNGC 3 cut(s) 69, 286, 318
Sau3AI GATC 1 cut(s) 490
Sau96I GGNCC 1 cut(s) 257
ScrFI CCNGG 2 cut(s) 379, 498
SduI GDGCHC 3 cut(s) 100, 442, 474
SetI ASST 7 cut(s) 79, 132, 189, 314, 450, 466, 474
SfcI CTRYAG 1 cut(s) 235
SmlI CTYRAG 1 cut(s) 62
SmoI CTYRAG 1 cut(s) 62
Sse9I AATT 4 cut(s) 139, 153, 340, 502
SsiI CCGC 6 cut(s) 69, 164, 285, 288, 317, 494
SspMI CTAG 2 cut(s) 188, 201
SstI GAGCTC 1 cut(s) 474
StyD4I CCNGG 2 cut(s) 377, 496
StyI CCWWGG 1 cut(s) 168
TaaI ACNGT 2 cut(s) 196, 300
TaqI TCGA 1 cut(s) 251
TasI AATT 4 cut(s) 139, 153, 340, 502
TauI GCSGC 3 cut(s) 71, 288, 320
TfiI GAWTC 1 cut(s) 292
TspDTI ATGAA 1 cut(s) 43
TspGWI ACGGA 2 cut(s) 163, 377
VneI GTGCAC 1 cut(s) 438
XapI RAATTY 1 cut(s) 340
XmnI GAANNNNTTC 2 cut(s) 275, 344
XspI CTAG 2 cut(s) 188, 201
Zsp2I ATGCAT 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.