Belongs to the NPH3 family
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G49900 AT3G49900 |
| fragaria_vesca | FvH4_1g17650 FvH4_1g17650 |
| malus_domestica | MD02G1185300.v1.1 |
| prunus_persica | Prupe.6G221500_v2.0.a1 |
| pyrus_communis | pycom02g15020 |
| rosa_chinensis | RchiOBHm_Chr2g0107971 |
| rosa_laevigata | RLG00000017630 |
| rosa_multiflora | Rmu_co8394919.1_g000001 Rmu_sc0001484.1_g000029 |
| rosa_roxburghii | Rroxscaffold_2G00135770 |
| rosa_rugosa | Rorug02G0149100 |
| rosa_samantha | Rh2AG198400 Rh2BG211200 Rh2CG203000 Rh2DG206000 |
| rosa_wichuraiana | Rw2G015740 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 620, 696 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1339 |
| AatII | GACGTC | 1 cut(s) | 690 |
| AccI | GTMKAC | 1 cut(s) | 1343 |
| AccII | CGCG | 3 cut(s) | 272, 1017, 1040 |
| AciI | CCGC | 8 cut(s) | 69, 380, 536, 594, 897, 1030, 1038, 1061 |
| AclI | AACGTT | 1 cut(s) | 299 |
| AclWI | GGATC | 3 cut(s) | 1021, 1288, 1480 |
| AcoI | YGGCCR | 3 cut(s) | 291, 312, 1062 |
| AcsI | RAATTY | 1 cut(s) | 317 |
| AcyI | GRCGYC | 1 cut(s) | 687 |
| AfaI | GTAC | 1 cut(s) | 886 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 205, 439 |
| AgsI | TTSAA | 3 cut(s) | 610, 644, 1381 |
| AjnI | CCWGG | 1 cut(s) | 804 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1103, 1135 |
| AleI | CACNNNNGTG | 1 cut(s) | 308 |
| Alw21I | GWGCWC | 2 cut(s) | 1073, 1101 |
| Alw26I | GTCTC | 2 cut(s) | 26, 144 |
| AlwI | GGATC | 3 cut(s) | 1021, 1288, 1480 |
| Ama87I | CYCGRG | 3 cut(s) | 141, 632, 1072 |
| AoxI | GGCC | 6 cut(s) | 291, 312, 657, 987, 1050, 1062 |
| ApoI | RAATTY | 1 cut(s) | 317 |
| AspLEI | GCGC | 3 cut(s) | 274, 669, 1042 |
| AspS9I | GGNCC | 1 cut(s) | 1050 |
| AsuHPI | GGTGA | 3 cut(s) | 599, 783, 1241 |
| AvaI | CYCGRG | 3 cut(s) | 141, 632, 1072 |
| BaeGI | GKGCMC | 1 cut(s) | 156 |
| BanII | GRGCYC | 3 cut(s) | 334, 1073, 1101 |
| BauI | CACGAG | 4 cut(s) | 308, 1066, 1133, 1202 |
| BbsI | GAAGAC | 3 cut(s) | 57, 487, 1308 |
| Bbv12I | GWGCWC | 2 cut(s) | 1073, 1101 |
| BbvCI | CCTCAGC | 1 cut(s) | 1046 |
| BccI | CCATC | 1 cut(s) | 44 |
| BceAI | ACGGC | 4 cut(s) | 452, 549, 607, 867 |
| BciT130I | CCWGG | 1 cut(s) | 806 |
| BciVI | GTATCC | 1 cut(s) | 1071 |
| BclI | TGATCA | 2 cut(s) | 922, 946 |
| BcoDI | GTCTC | 2 cut(s) | 26, 144 |
| BfaI | CTAG | 4 cut(s) | 123, 998, 1254, 1305 |
| BfmI | CTRYAG | 1 cut(s) | 778 |
| BfuI | GTATCC | 1 cut(s) | 1071 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1058 |
| BglII | AGATCT | 1 cut(s) | 706 |
| Bme1390I | CCNGG | 1 cut(s) | 806 |
| BmeT110I | CYCGRG | 3 cut(s) | 141, 632, 1072 |
| BmgT120I | GGNCC | 1 cut(s) | 1050 |
| BmiI | GGNNCC | 2 cut(s) | 331, 680 |
| BmrFI | CCNGG | 1 cut(s) | 806 |
| BmsI | GCATC | 4 cut(s) | 199, 494, 799, 1247 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1174 |
| BpiI | GAAGAC | 3 cut(s) | 57, 487, 1308 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 50, 82, 321, 353, 1406, 1438 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1046 |
| BpuEI | CTTGAG | 1 cut(s) | 410 |
| BsaHI | GRCGYC | 1 cut(s) | 687 |
| BsaI | GGTCTC | 2 cut(s) | 26, 144 |
| BsaJI | CCNNGG | 4 cut(s) | 633, 654, 1337, 1425 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 786, 816 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 205, 439 |
| Bse118I | RCCGGY | 1 cut(s) | 980 |
| BseBI | CCWGG | 1 cut(s) | 806 |
| BseDI | CCNNGG | 4 cut(s) | 633, 654, 1337, 1425 |
| BseGI | GGATG | 4 cut(s) | 214, 424, 814, 1129 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 205, 439 |
| BseMII | CTCAG | 1 cut(s) | 1037 |
| BseRI | GAGGAG | 6 cut(s) | 55, 102, 998, 1106, 1109, 1464 |
| BseSI | GKGCMC | 1 cut(s) | 156 |
| BseX3I | CGGCCG | 1 cut(s) | 291 |
| BseYI | CCCAGC | 1 cut(s) | 88 |
| Bsh1236I | CGCG | 3 cut(s) | 272, 1017, 1040 |
| Bsh1285I | CGRYCG | 2 cut(s) | 294, 981 |
| BshFI | GGCC | 6 cut(s) | 293, 314, 659, 989, 1052, 1064 |
| BsiEI | CGRYCG | 2 cut(s) | 294, 981 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1073, 1101 |
| BsiHKCI | CYCGRG | 3 cut(s) | 141, 632, 1072 |
| BsiSI | CCGG | 1 cut(s) | 981 |
| BslFI | GGGAC | 3 cut(s) | 615, 1315, 1345 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 205, 439 |
| BsmAI | GTCTC | 2 cut(s) | 26, 144 |
| BsmFI | GGGAC | 3 cut(s) | 615, 1315, 1345 |
| BsmI | GAATGC | 1 cut(s) | 118 |
| BsnI | GGCC | 6 cut(s) | 293, 314, 659, 989, 1052, 1064 |
| Bso31I | GGTCTC | 2 cut(s) | 26, 144 |
| BsoBI | CYCGRG | 3 cut(s) | 141, 632, 1072 |
| Bsp1286I | GDGCHC | 4 cut(s) | 156, 334, 1073, 1101 |
| Bsp143I | GATC | 7 cut(s) | 706, 922, 946, 1026, 1280, 1434, 1485 |
| BspACI | CCGC | 8 cut(s) | 69, 380, 536, 594, 897, 1030, 1038, 1061 |
| BspANI | GGCC | 6 cut(s) | 293, 314, 659, 989, 1052, 1064 |
| BspCNI | CTCAG | 1 cut(s) | 1038 |
| BspFNI | CGCG | 3 cut(s) | 272, 1017, 1040 |
| BspHI | TCATGA | 2 cut(s) | 943, 952 |
| BspLI | GGNNCC | 2 cut(s) | 331, 680 |
| BspPI | GGATC | 3 cut(s) | 1021, 1288, 1480 |
| BspTNI | GGTCTC | 2 cut(s) | 26, 144 |
| BsrFI | RCCGGY | 1 cut(s) | 980 |
| BssAI | RCCGGY | 1 cut(s) | 980 |
| BssECI | CCNNGG | 4 cut(s) | 633, 654, 1337, 1425 |
| BssMI | GATC | 7 cut(s) | 706, 922, 946, 1026, 1280, 1434, 1485 |
| BssNI | GRCGYC | 1 cut(s) | 687 |
| BssSI | CACGAG | 4 cut(s) | 308, 1066, 1133, 1202 |
| BssT1I | CCWWGG | 1 cut(s) | 1425 |
| Bst2BI | CACGAG | 4 cut(s) | 308, 1066, 1133, 1202 |
| Bst2UI | CCWGG | 1 cut(s) | 806 |
| Bst4CI | ACNGT | 5 cut(s) | 410, 587, 625, 779, 840 |
| Bst6I | CTCTTC | 1 cut(s) | 103 |
| BstACI | GRCGYC | 1 cut(s) | 687 |
| BstC8I | GCNNGC | 3 cut(s) | 702, 785, 1183 |
| BstDEI | CTNAG | 2 cut(s) | 368, 1046 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 203 |
| BstF5I | GGATG | 4 cut(s) | 214, 424, 814, 1129 |
| BstFNI | CGCG | 3 cut(s) | 272, 1017, 1040 |
| BstHHI | GCGC | 3 cut(s) | 274, 669, 1042 |
| BstKTI | GATC | 7 cut(s) | 709, 925, 949, 1029, 1283, 1437, 1488 |
| BstMAI | GTCTC | 2 cut(s) | 26, 144 |
| BstMBI | GATC | 7 cut(s) | 706, 922, 946, 1026, 1280, 1434, 1485 |
| BstMCI | CGRYCG | 2 cut(s) | 294, 981 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 533, 905, 908, 914, 917, 1058, 1250, 1415 |
| BstNI | CCWGG | 1 cut(s) | 806 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1174 |
| BstSCI | CCNGG | 1 cut(s) | 804 |
| BstSFI | CTRYAG | 1 cut(s) | 778 |
| BstSLI | GKGCMC | 1 cut(s) | 156 |
| BstUI | CGCG | 3 cut(s) | 272, 1017, 1040 |
| BstV2I | GAAGAC | 3 cut(s) | 57, 487, 1308 |
| BstX2I | RGATCY | 1 cut(s) | 706 |
| BstYI | RGATCY | 1 cut(s) | 706 |
| BstZI | CGGCCG | 1 cut(s) | 291 |
| BsuI | GTATCC | 1 cut(s) | 1071 |
| BsuRI | GGCC | 6 cut(s) | 293, 314, 659, 989, 1052, 1064 |
| BtgZI | GCGATG | 1 cut(s) | 869 |
| BtsCI | GGATG | 4 cut(s) | 214, 424, 814, 1129 |
| Cac8I | GCNNGC | 3 cut(s) | 702, 785, 1183 |
| CciI | TCATGA | 2 cut(s) | 943, 952 |
| CfoI | GCGC | 3 cut(s) | 274, 669, 1042 |
| Cfr10I | RCCGGY | 1 cut(s) | 980 |
| Cfr13I | GGNCC | 1 cut(s) | 1050 |
| CseI | GACGC | 1 cut(s) | 617 |
| Csp6I | GTAC | 1 cut(s) | 885 |
| CviAII | CATG | 4 cut(s) | 135, 944, 953, 1108 |
| CviQI | GTAC | 1 cut(s) | 885 |
| DdeI | CTNAG | 2 cut(s) | 368, 1046 |
| DpnI | GATC | 7 cut(s) | 708, 924, 948, 1028, 1282, 1436, 1487 |
| DpnII | GATC | 7 cut(s) | 706, 922, 946, 1026, 1280, 1434, 1485 |
| DraI | TTTAAA | 1 cut(s) | 237 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1339 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1339 |
| EaeI | YGGCCR | 3 cut(s) | 291, 312, 1062 |
| EagI | CGGCCG | 1 cut(s) | 291 |
| Eam1104I | CTCTTC | 1 cut(s) | 103 |
| EarI | CTCTTC | 1 cut(s) | 103 |
| EciI | GGCGGA | 2 cut(s) | 58, 1019 |
| Ecl136II | GAGCTC | 2 cut(s) | 1071, 1099 |
| EclXI | CGGCCG | 1 cut(s) | 291 |
| Eco130I | CCWWGG | 1 cut(s) | 1425 |
| Eco24I | GRGCYC | 3 cut(s) | 334, 1073, 1101 |
| Eco31I | GGTCTC | 2 cut(s) | 26, 144 |
| Eco52I | CGGCCG | 1 cut(s) | 291 |
| Eco53kI | GAGCTC | 2 cut(s) | 1071, 1099 |
| Eco88I | CYCGRG | 3 cut(s) | 141, 632, 1072 |
| EcoICRI | GAGCTC | 2 cut(s) | 1071, 1099 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 203 |
| EcoRI | GAATTC | 1 cut(s) | 317 |
| EcoRII | CCWGG | 1 cut(s) | 804 |
| EcoT14I | CCWWGG | 1 cut(s) | 1425 |
| EcoT38I | GRGCYC | 3 cut(s) | 334, 1073, 1101 |
| ErhI | CCWWGG | 1 cut(s) | 1425 |
| FaeI | CATG | 4 cut(s) | 138, 947, 956, 1111 |
| FaqI | GGGAC | 3 cut(s) | 615, 1315, 1345 |
| FatI | CATG | 4 cut(s) | 134, 943, 952, 1107 |
| FbaI | TGATCA | 2 cut(s) | 922, 946 |
| FblI | GTMKAC | 1 cut(s) | 1343 |
| FokI | GGATG | 4 cut(s) | 221, 431, 821, 1136 |
| FriOI | GRGCYC | 3 cut(s) | 334, 1073, 1101 |
| FspBI | CTAG | 4 cut(s) | 123, 998, 1254, 1305 |
| GlaI | GCGC | 3 cut(s) | 273, 668, 1041 |
| GsaI | CCCAGC | 1 cut(s) | 92 |
| HaeIII | GGCC | 6 cut(s) | 293, 314, 659, 989, 1052, 1064 |
| HapII | CCGG | 1 cut(s) | 981 |
| HgaI | GACGC | 1 cut(s) | 617 |
| HhaI | GCGC | 3 cut(s) | 274, 669, 1042 |
| Hin1I | GRCGYC | 1 cut(s) | 687 |
| Hin1II | CATG | 4 cut(s) | 138, 947, 956, 1111 |
| Hin6I | GCGC | 3 cut(s) | 272, 667, 1040 |
| HinP1I | GCGC | 3 cut(s) | 272, 667, 1040 |
| HincII | GTYRAC | 2 cut(s) | 245, 1344 |
| HindII | GTYRAC | 2 cut(s) | 245, 1344 |
| HinfI | GANTC | 4 cut(s) | 131, 172, 994, 1264 |
| HpaII | CCGG | 1 cut(s) | 981 |
| HphI | GGTGA | 3 cut(s) | 599, 783, 1241 |
| Hpy166II | GTNNAC | 3 cut(s) | 245, 303, 1344 |
| Hpy188I | TCNGA | 3 cut(s) | 265, 851, 1263 |
| Hpy188III | TCNNGA | 9 cut(s) | 123, 222, 521, 632, 718, 944, 953, 1133, 1202 |
| Hpy8I | GTNNAC | 3 cut(s) | 245, 303, 1344 |
| Hpy99I | CGWCG | 3 cut(s) | 689, 692, 1348 |
| HpyAV | CCTTC | 3 cut(s) | 87, 1292, 1378 |
| HpyCH4III | ACNGT | 5 cut(s) | 410, 587, 625, 779, 840 |
| HpyCH4IV | ACGT | 4 cut(s) | 241, 299, 687, 1171 |
| HpyCH4V | TGCA | 5 cut(s) | 108, 118, 558, 765, 812 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 533, 905, 908, 914, 917, 1058, 1250, 1415 |
| HpyF3I | CTNAG | 2 cut(s) | 368, 1046 |
| HpySE526I | ACGT | 4 cut(s) | 241, 299, 687, 1171 |
| Hsp92I | GRCGYC | 1 cut(s) | 687 |
| Hsp92II | CATG | 4 cut(s) | 138, 947, 956, 1111 |
| HspAI | GCGC | 3 cut(s) | 272, 667, 1040 |
| Ksp22I | TGATCA | 2 cut(s) | 922, 946 |
| Kzo9I | GATC | 7 cut(s) | 706, 922, 946, 1026, 1280, 1434, 1485 |
| LmnI | GCTCC | 4 cut(s) | 329, 435, 773, 1096 |
| LpnPI | CCDG | 8 cut(s) | 102, 135, 167, 227, 791, 818, 994, 1257 |
| LweI | GCATC | 4 cut(s) | 199, 494, 799, 1247 |
| MaeI | CTAG | 4 cut(s) | 123, 998, 1254, 1305 |
| MaeII | ACGT | 4 cut(s) | 241, 299, 687, 1171 |
| MaeIII | GTNAC | 6 cut(s) | 323, 404, 410, 587, 1130, 1229 |
| MalI | GATC | 7 cut(s) | 708, 924, 948, 1028, 1282, 1436, 1487 |
| MboI | GATC | 7 cut(s) | 706, 922, 946, 1026, 1280, 1434, 1485 |
| MfeI | CAATTG | 1 cut(s) | 1309 |
| MflI | RGATCY | 1 cut(s) | 706 |
| MhlI | GDGCHC | 4 cut(s) | 156, 334, 1073, 1101 |
| MluCI | AATT | 4 cut(s) | 317, 383, 735, 1309 |
| MlyI | GAGTC | 1 cut(s) | 988 |
| MmeI | TCCRAC | 3 cut(s) | 961, 1036, 1101 |
| MseI | TTAA | 4 cut(s) | 236, 353, 437, 471 |
| MslI | CAYNNNNRTG | 2 cut(s) | 207, 308 |
| MspA1I | CMGCKG | 3 cut(s) | 380, 920, 1045 |
| MspI | CCGG | 1 cut(s) | 981 |
| MspR9I | CCNGG | 1 cut(s) | 806 |
| MunI | CAATTG | 1 cut(s) | 1309 |
| Mva1269I | GAATGC | 1 cut(s) | 118 |
| MvaI | CCWGG | 1 cut(s) | 806 |
| MvnI | CGCG | 3 cut(s) | 272, 1017, 1040 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 533, 905, 908, 914, 917, 1058, 1250, 1415 |
| NdeII | GATC | 7 cut(s) | 706, 922, 946, 1026, 1280, 1434, 1485 |
| NlaIII | CATG | 4 cut(s) | 138, 947, 956, 1111 |
| NlaIV | GGNNCC | 2 cut(s) | 331, 680 |
| NmeAIII | GCCGAG | 1 cut(s) | 679 |
| NmuCI | GTSAC | 4 cut(s) | 410, 587, 1130, 1229 |
| OliI | CACNNNNGTG | 1 cut(s) | 308 |
| PaeR7I | CTCGAG | 1 cut(s) | 1072 |
| PagI | TCATGA | 2 cut(s) | 943, 952 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 296 |
| PctI | GAATGC | 1 cut(s) | 118 |
| PfeI | GAWTC | 3 cut(s) | 131, 172, 1264 |
| PfoI | TCCNGGA | 1 cut(s) | 804 |
| PleI | GAGTC | 1 cut(s) | 988 |
| PpsI | GAGTC | 1 cut(s) | 988 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1174 |
| PsiI | TTATAA | 2 cut(s) | 620, 696 |
| Psp124BI | GAGCTC | 2 cut(s) | 1073, 1101 |
| Psp1406I | AACGTT | 1 cut(s) | 299 |
| Psp6I | CCWGG | 1 cut(s) | 804 |
| PspFI | CCCAGC | 1 cut(s) | 88 |
| PspGI | CCWGG | 1 cut(s) | 804 |
| PspN4I | GGNNCC | 2 cut(s) | 331, 680 |
| PspPI | GGNCC | 1 cut(s) | 1050 |
| PspXI | VCTCGAGB | 1 cut(s) | 1072 |
| PsuI | RGATCY | 1 cut(s) | 706 |
| PvuII | CAGCTG | 2 cut(s) | 920, 1045 |
| RsaI | GTAC | 1 cut(s) | 886 |
| RsaNI | GTAC | 1 cut(s) | 885 |
| RseI | CAYNNNNRTG | 2 cut(s) | 207, 308 |
| SacI | GAGCTC | 2 cut(s) | 1073, 1101 |
| SalI | GTCGAC | 1 cut(s) | 1342 |
| SaqAI | TTAA | 4 cut(s) | 236, 353, 437, 471 |
| Sau3AI | GATC | 7 cut(s) | 706, 922, 946, 1026, 1280, 1434, 1485 |
| Sau96I | GGNCC | 1 cut(s) | 1050 |
| SchI | GAGTC | 1 cut(s) | 988 |
| ScrFI | CCNGG | 1 cut(s) | 806 |
| SduI | GDGCHC | 4 cut(s) | 156, 334, 1073, 1101 |
| SfaNI | GCATC | 4 cut(s) | 199, 494, 799, 1247 |
| SfcI | CTRYAG | 1 cut(s) | 778 |
| Sfr274I | CTCGAG | 1 cut(s) | 1072 |
| SlaI | CTCGAG | 1 cut(s) | 1072 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 207, 308 |
| SmlI | CTYRAG | 2 cut(s) | 389, 1072 |
| SmoI | CTYRAG | 2 cut(s) | 389, 1072 |
| Sse9I | AATT | 4 cut(s) | 317, 383, 735, 1309 |
| SsiI | CCGC | 8 cut(s) | 69, 380, 536, 594, 897, 1030, 1038, 1061 |
| SspMI | CTAG | 4 cut(s) | 123, 998, 1254, 1305 |
| SstI | GAGCTC | 2 cut(s) | 1073, 1101 |
| StyD4I | CCNGG | 1 cut(s) | 804 |
| StyI | CCWWGG | 1 cut(s) | 1425 |
| TaaI | ACNGT | 5 cut(s) | 410, 587, 625, 779, 840 |
| TaiI | ACGT | 4 cut(s) | 244, 302, 690, 1174 |
| TaqI | TCGA | 3 cut(s) | 175, 1073, 1343 |
| TasI | AATT | 4 cut(s) | 317, 383, 735, 1309 |
| TauI | GCSGC | 2 cut(s) | 539, 1064 |
| TfiI | GAWTC | 3 cut(s) | 131, 172, 1264 |
| Tru1I | TTAA | 4 cut(s) | 236, 353, 437, 471 |
| Tru9I | TTAA | 4 cut(s) | 236, 353, 437, 471 |
| TseFI | GTSAC | 4 cut(s) | 410, 587, 1130, 1229 |
| Tsp45I | GTSAC | 4 cut(s) | 410, 587, 1130, 1229 |
| TspDTI | ATGAA | 6 cut(s) | 744, 832, 1124, 1140, 1178, 1488 |
| TspGWI | ACGGA | 6 cut(s) | 342, 413, 443, 455, 488, 1182 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 203 |
| XapI | RAATTY | 1 cut(s) | 317 |
| XbaI | TCTAGA | 1 cut(s) | 122 |
| XhoI | CTCGAG | 1 cut(s) | 1072 |
| XmiI | GTMKAC | 1 cut(s) | 1343 |
| XspI | CTAG | 4 cut(s) | 123, 998, 1254, 1305 |
| ZraI | GACGTC | 1 cut(s) | 688 |