Rmu_sc0001484.1_g000029

Belongs to the NPH3 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001484.1
OG0013082
Physical Location & Seq
Reverse (-)
119070 .. 124533
5464 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001484.1_g000029.1.cds

Sequence Viewer

Length: 2940 bp
atgaggaattggaaaaatctagggtttgttgagactatctatgaagaagaagatgactgtgaattctcttctgcctctccttctctctccccagccatctcttcaccttctacacctctccattccagagtagaatcatggtctcgggcaactgggcacagtacagaagttctgattcgagttcagggaaaatgtttccaactgcacaaggatccactgacatcaagaagcacatatttaaagcgccaactaaccgccttcgtctcggacttcacgttgcctttaaacatctccgccgaaaccttcaccctcgtcgccgatttctgctacggcgcccgcctcgtcataacgctgttcaacgtcgccgctctaagaaccgccgcggagctactcgagatgacggagactaacgacgacgatgacaacaacttactccactcaacggatacctacttcagccaagtggtctccgtcaacagagactacgcgtccgtagtgtttaggtcttgcatgccgttacttcccgaagccgaaacggtggcgtttctcgtgagcaggtgcattgaggcgttggctctatcggatgacggcgacagccgtgtggattggctacatgaggttataacggtgtgtcccgaggactttcagatagtcgccgaggtcattcagcgtcgttacggaagccacgacgtcgtttataagcttgttgatctttatatcatgagatataatggcaaaattacagaggagcagaaagcacagatatgcagttccatagactgcagcaagctctcaccacaagtccttctagaagcggtgcaaaacccgataatgccgttacgtttcgttgtccgagccatgctcatcgagcagctcaacactcgccgcaccattctcactgcagctactgatcatcaccactcccaacttcctctcctccagcatcattatgacgtcagcaaatccgaccctgccccagtcactacactaggttccatcctccaacgtgacaatgtgctccgccaatcggcgcagctgaaggccaccatggccgcgacgagctcgagaatcgaaaccctagaagaagagctgaatgggatgaagaagttgctggaagagtgtcataatgagaagaatgataggagtataatggcgggggctggtggtgaccgcaagtctgccagctttcattatgggagtactgatgagaataatcacagtaagttgataacaaagtctgcttcttcgtctagttttcggctcattaattttagacgcaaggagaaaacggaggggactaattggtcatcttgtaatggaacgccggggttgacgaagagtattagtcagaggctgattagtggattgaagaaagcatttcgggtttcaggatcaaaggatgtctcgcaggaaaaaatcgtgagctatggcgatggtggcaataataaggatatcattgtctcgggcaactgggcacagtacagaagttctgattcgagttcagggaaaatgtttccaactgcacaaggtttgtcggttcctcaattgttaagtttttctgcttttcatcttctctcgcttctcagtttagggcctttagatttgcattttgttgatattgatgggtcgattttgggtggaattcatgcatcttaccggacagcttactggaaattttcggatccactgacatcaagaagcacatatttaaagcgccaactaaccgccttcgtctcggacttcacgttgcctttaaacctctccgccgaacccttcaccctcgtcgccgctttctgctacggcgcccgcctcgtcataacgctgttcaacgtcgccgctctaagaaccgccgcggagctactcgagatgacggagactaacgacgacgatgacaacaacttactccactcaacggatacctacttcagccaagtggtctccgtcaacagagactacgcgtccgtagtgtttaggtcttgcatgccgttacttcccgaagccgaaacggtggcgtttctcgtgagcaggtgcattgaggcgttggctctatcggatgacggcgacagccgtgtggattggctacatgaggttataacggtgtgtcccgaggactttcagatagtcgccgaggtcattcagcgtcgttacggaagccacgacgtcgtttataagcttgttgatctttatatcatgagatataatggcaaaattacagaggagcagaaagcacagatatgcagttccatagactgcagcaagctctcaccacaagtccttctagaagcggtgcaaaacccgataatgccgttacgtttcgttgtccgagccatgctcatcgagcagctcaacactcgccgcaccattctcactgcagctactgatcatcaccactcccaacttcctctcctccagcatcattatgacgtcagcaaatccgaccctgccccagtcactacactaggttccatcctccaacgtgacaatgtgctccgccaatcggcgcagctgaaggccaccatggccgcgacgagctcgagaatcgaaaccctagaagaagagctgaatgggatgaagaagttgctggaagagtgtcataatgagaagaatgataggagtataatggcgggggctggtggtgaccgcaagtctgccagctttcattatgggagtactgatgagaataatcacagtaagttgataacaaagtctgcttcttcgtctagttttcggctcattaattttagacgcaaggagaaaacggaggggactaattggtcatcttgtaatggaacgccggggttgacgaagagtattagtcagaggctgattagtggattgaagaaagcatttcgggtttcaggatcaaaggatgtctcgcaggaaaaaatcgtgagctatggcgatggtggcaataataaggatatcattgtgattgaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB NPH3

Protein Analysis

979

Amino Acids

108.93

Weight (kDa)

6.09

Isoelectric Point (pI)

48.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013082)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G49900 AT3G49900
fragaria_vesca FvH4_1g17650 FvH4_1g17650
malus_domestica MD02G1185300.v1.1
prunus_persica Prupe.6G221500_v2.0.a1
pyrus_communis pycom02g15020
rosa_chinensis RchiOBHm_Chr2g0107971
rosa_laevigata RLG00000017630
rosa_multiflora Rmu_co8394919.1_g000001 Rmu_sc0001484.1_g000029
rosa_roxburghii Rroxscaffold_2G00135770
rosa_rugosa Rorug02G0149100
rosa_samantha Rh2AG198400 Rh2BG211200 Rh2CG203000 Rh2DG206000
rosa_wichuraiana Rw2G015740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 4 cut(s) 623, 699, 2093, 2169
AarI CACCTGC 2 cut(s) 546, 2016
AasI GACNNNNNNGTC 2 cut(s) 1303, 2773
AatII GACGTC 4 cut(s) 693, 957, 2163, 2427
Acc36I ACCTGC 2 cut(s) 546, 2016
AccB1I GGYRCC 2 cut(s) 332, 1802
AccBSI CCGCTC 2 cut(s) 368, 1838
AccII CGCG 6 cut(s) 383, 488, 1055, 1853, 1958, 2525
AclWI GGATC 6 cut(s) 206, 219, 1399, 1676, 1689, 2869
AcoI YGGCCR 2 cut(s) 1050, 2520
AcsI RAATTY 3 cut(s) 62, 1641, 1673
AcuI CTGAAG 4 cut(s) 439, 1058, 1909, 2528
AcyI GRCGYC 6 cut(s) 333, 690, 954, 1803, 2160, 2424
AfaI GTAC 4 cut(s) 163, 1201, 1481, 2671
AfiI CCNNNNNNNGG 4 cut(s) 442, 1027, 1912, 2497
AflIII ACRYGT 2 cut(s) 486, 1956
AgsI TTSAA 5 cut(s) 358, 1369, 1828, 2839, 2936
AhdI GACNNNNNGTC 4 cut(s) 487, 1174, 1957, 2644
Alw21I GWGCWC 4 cut(s) 1020, 1064, 2490, 2534
AlwI GGATC 6 cut(s) 206, 219, 1399, 1676, 1689, 2869
AlwNI CAGNNNCTG 4 cut(s) 908, 1354, 2378, 2824
Ama87I CYCGRG 8 cut(s) 144, 392, 635, 1063, 1462, 1862, 2105, 2533
AoxI GGCC 5 cut(s) 1041, 1050, 1592, 2511, 2520
ApeKI GCWGC 8 cut(s) 783, 871, 902, 1033, 2253, 2341, 2372, 2503
ApoI RAATTY 3 cut(s) 62, 1641, 1673
AseI ATTAAT 2 cut(s) 1266, 2736
AspLEI GCGC 6 cut(s) 246, 335, 1033, 1716, 1805, 2503
AspS9I GGNCC 1 cut(s) 1592
AsuC2I CCSGG 2 cut(s) 1326, 2796
AsuHPI GGTGA 9 cut(s) 96, 298, 786, 908, 1178, 1768, 2256, 2378, 2648
AvaI CYCGRG 8 cut(s) 144, 392, 635, 1063, 1462, 1862, 2105, 2533
BaeGI GKGCMC 2 cut(s) 159, 1477
BamHI GGATCC 2 cut(s) 211, 1681
BanI GGYRCC 2 cut(s) 332, 1802
BanII GRGCYC 2 cut(s) 1064, 2534
BauI CACGAG 2 cut(s) 548, 2018
Bbv12I GWGCWC 4 cut(s) 1020, 1064, 2490, 2534
BbvI GCAGC 8 cut(s) 795, 883, 914, 1045, 2265, 2353, 2384, 2515
BccI CCATC 6 cut(s) 104, 1004, 1427, 1616, 2474, 2897
BciVI GTATCC 2 cut(s) 439, 1909
BclI TGATCA 2 cut(s) 910, 2380
BcnI CCSGG 2 cut(s) 1326, 2796
BfaI CTAG 9 cut(s) 20, 809, 989, 1079, 1251, 2279, 2459, 2549, 2721
BfmI CTRYAG 4 cut(s) 781, 900, 2251, 2370
BfoI RGCGCY 4 cut(s) 247, 336, 1717, 1806
BfuAI ACCTGC 2 cut(s) 546, 2016
BfuI GTATCC 2 cut(s) 439, 1909
BglI GCCNNNNNGGC 2 cut(s) 1049, 2519
BmcAI AGTACT 2 cut(s) 1201, 2671
Bme1390I CCNGG 2 cut(s) 1326, 2796
BmeRI GACNNNNNGTC 4 cut(s) 487, 1174, 1957, 2644
BmeT110I CYCGRG 8 cut(s) 144, 392, 635, 1063, 1462, 1862, 2105, 2533
BmgT120I GGNCC 1 cut(s) 1592
BmiI GGNNCC 7 cut(s) 213, 334, 994, 1539, 1683, 1804, 2464
BmrFI CCNGG 2 cut(s) 1326, 2796
BmrI ACTGGG 4 cut(s) 162, 971, 1480, 2441
BmsI GCATC 3 cut(s) 952, 1658, 2422
BmuI ACTGGG 4 cut(s) 162, 971, 1480, 2441
BplI GAGNNNNNCTC 4 cut(s) 846, 878, 2316, 2348
BpmI CTGGAG 2 cut(s) 923, 2393
BpuMI CCSGG 2 cut(s) 1326, 2796
BsaHI GRCGYC 6 cut(s) 333, 690, 954, 1803, 2160, 2424
BsaI GGTCTC 3 cut(s) 147, 472, 1942
BsaWI WCCGGW 1 cut(s) 1656
BsaXI ACNNNNNCTCC 4 cut(s) 918, 948, 2388, 2418
Bsc4I CCNNNNNNNGG 4 cut(s) 442, 1027, 1912, 2497
Bse1I ACTGG 5 cut(s) 157, 977, 1475, 1673, 2447
BseGI GGATG 8 cut(s) 589, 996, 1104, 1405, 2059, 2466, 2574, 2875
BseLI CCNNNNNNNGG 4 cut(s) 442, 1027, 1912, 2497
BseMII CTCAG 1 cut(s) 1597
BseNI ACTGG 5 cut(s) 157, 977, 1475, 1673, 2447
BseRI GAGGAG 4 cut(s) 761, 926, 2231, 2396
BseSI GKGCMC 2 cut(s) 159, 1477
BseXI GCAGC 8 cut(s) 795, 883, 914, 1045, 2265, 2353, 2384, 2515
BseYI CCCAGC 1 cut(s) 91
BsgI GTGCAG 2 cut(s) 188, 1506
Bsh1236I CGCG 6 cut(s) 383, 488, 1055, 1853, 1958, 2525
BshFI GGCC 5 cut(s) 1043, 1052, 1594, 2513, 2522
BshNI GGYRCC 2 cut(s) 332, 1802
BsiHKAI GWGCWC 4 cut(s) 1020, 1064, 2490, 2534
BsiHKCI CYCGRG 8 cut(s) 144, 392, 635, 1063, 1462, 1862, 2105, 2533
BsiSI CCGG 3 cut(s) 1325, 1657, 2795
BslFI GGGAC 4 cut(s) 618, 1309, 2088, 2779
BslI CCNNNNNNNGG 4 cut(s) 442, 1027, 1912, 2497
BsmBI CGTCTC 2 cut(s) 268, 1738
BsmFI GGGAC 4 cut(s) 618, 1309, 2088, 2779
BsnI GGCC 5 cut(s) 1043, 1052, 1594, 2513, 2522
Bso31I GGTCTC 3 cut(s) 147, 472, 1942
BsoBI CYCGRG 8 cut(s) 144, 392, 635, 1063, 1462, 1862, 2105, 2533
Bsp1286I GDGCHC 6 cut(s) 159, 1020, 1064, 1477, 2490, 2534
Bsp143I GATC 8 cut(s) 211, 709, 910, 1391, 1681, 2179, 2380, 2861
Bsp19I CCATGG 2 cut(s) 1047, 2517
BspANI GGCC 5 cut(s) 1043, 1052, 1594, 2513, 2522
BspCNI CTCAG 1 cut(s) 1596
BspFNI CGCG 6 cut(s) 383, 488, 1055, 1853, 1958, 2525
BspHI TCATGA 2 cut(s) 720, 2190
BspLI GGNNCC 7 cut(s) 213, 334, 994, 1539, 1683, 1804, 2464
BspMAI CTGCAG 4 cut(s) 785, 904, 2255, 2374
BspMI ACCTGC 2 cut(s) 546, 2016
BspPI GGATC 6 cut(s) 206, 219, 1399, 1676, 1689, 2869
BspQI GCTCTTC 2 cut(s) 1080, 2550
BspT107I GGYRCC 2 cut(s) 332, 1802
BspTNI GGTCTC 3 cut(s) 147, 472, 1942
BsrBI CCGCTC 2 cut(s) 368, 1838
BsrI ACTGG 5 cut(s) 157, 977, 1475, 1673, 2447
BssMI GATC 8 cut(s) 211, 709, 910, 1391, 1681, 2179, 2380, 2861
BssNI GRCGYC 6 cut(s) 333, 690, 954, 1803, 2160, 2424
BssSI CACGAG 2 cut(s) 548, 2018
BssT1I CCWWGG 2 cut(s) 1047, 2517
Bst2BI CACGAG 2 cut(s) 548, 2018
Bst4CI ACNGT 9 cut(s) 59, 161, 538, 628, 1220, 1479, 2008, 2098, 2690
Bst6I CTCTTC 8 cut(s) 73, 106, 1080, 1110, 1331, 2550, 2580, 2801
BstACI GRCGYC 6 cut(s) 333, 690, 954, 1803, 2160, 2424
BstC8I GCNNGC 8 cut(s) 337, 512, 788, 1183, 1807, 1982, 2258, 2653
BstDEI CTNAG 3 cut(s) 371, 1583, 1841
BstDSI CCRYGG 4 cut(s) 381, 1047, 1851, 2517
BstEII GGTNACC 2 cut(s) 1166, 2636
BstF5I GGATG 8 cut(s) 589, 996, 1104, 1405, 2059, 2466, 2574, 2875
BstFNI CGCG 6 cut(s) 383, 488, 1055, 1853, 1958, 2525
BstH2I RGCGCY 4 cut(s) 247, 336, 1717, 1806
BstHHI GCGC 6 cut(s) 246, 335, 1033, 1716, 1805, 2503
BstKTI GATC 8 cut(s) 214, 712, 913, 1394, 1684, 2182, 2383, 2864
BstMBI GATC 8 cut(s) 211, 709, 910, 1391, 1681, 2179, 2380, 2861
BstMWI GCNNNNNNNGC 6 cut(s) 868, 1049, 1437, 2338, 2519, 2907
BstNSI RCATGY 2 cut(s) 514, 1984
BstPI GGTNACC 2 cut(s) 1166, 2636
BstSCI CCNGG 2 cut(s) 1324, 2794
BstSFI CTRYAG 4 cut(s) 781, 900, 2251, 2370
BstSLI GKGCMC 2 cut(s) 159, 1477
BstUI CGCG 6 cut(s) 383, 488, 1055, 1853, 1958, 2525
BstV1I GCAGC 8 cut(s) 795, 883, 914, 1045, 2265, 2353, 2384, 2515
BstX2I RGATCY 2 cut(s) 211, 1681
BstYI RGATCY 2 cut(s) 211, 1681
BsuI GTATCC 2 cut(s) 439, 1909
BsuRI GGCC 5 cut(s) 1043, 1052, 1594, 2513, 2522
BtgI CCRYGG 4 cut(s) 381, 1047, 1851, 2517
BtgZI GCGATG 2 cut(s) 1446, 2916
BtsCI GGATG 8 cut(s) 589, 996, 1104, 1405, 2059, 2466, 2574, 2875
BtsI GCAGTG 2 cut(s) 897, 2367
BtsIMutI CAGTG 4 cut(s) 215, 897, 1685, 2367
BveI ACCTGC 2 cut(s) 546, 2016
Cac8I GCNNGC 8 cut(s) 337, 512, 788, 1183, 1807, 1982, 2258, 2653
CaiI CAGNNNCTG 4 cut(s) 908, 1354, 2378, 2824
CciI TCATGA 2 cut(s) 720, 2190
CfoI GCGC 6 cut(s) 246, 335, 1033, 1716, 1805, 2503
Cfr13I GGNCC 1 cut(s) 1592
Cfr42I CCGCGG 2 cut(s) 384, 1854
CseI GACGC 6 cut(s) 477, 659, 1284, 1947, 2129, 2754
Csp6I GTAC 4 cut(s) 162, 1200, 1480, 2670
CviQI GTAC 4 cut(s) 162, 1200, 1480, 2670
DdeI CTNAG 3 cut(s) 371, 1583, 1841
DinI GGCGCC 2 cut(s) 334, 1804
DpnI GATC 8 cut(s) 213, 711, 912, 1393, 1683, 2181, 2382, 2863
DpnII GATC 8 cut(s) 211, 709, 910, 1391, 1681, 2179, 2380, 2861
DraI TTTAAA 4 cut(s) 240, 285, 1710, 1755
DrdI GACNNNNNNGTC 2 cut(s) 1303, 2773
DriI GACNNNNNGTC 4 cut(s) 487, 1174, 1957, 2644
DseDI GACNNNNNNGTC 2 cut(s) 1303, 2773
EaeI YGGCCR 2 cut(s) 1050, 2520
Eam1104I CTCTTC 8 cut(s) 73, 106, 1080, 1110, 1331, 2550, 2580, 2801
Eam1105I GACNNNNNGTC 4 cut(s) 487, 1174, 1957, 2644
EarI CTCTTC 8 cut(s) 73, 106, 1080, 1110, 1331, 2550, 2580, 2801
EciI GGCGGA 4 cut(s) 283, 1010, 1753, 2480
Ecl136II GAGCTC 2 cut(s) 1062, 2532
Eco130I CCWWGG 2 cut(s) 1047, 2517
Eco24I GRGCYC 2 cut(s) 1064, 2534
Eco31I GGTCTC 3 cut(s) 147, 472, 1942
Eco32I GATATC 2 cut(s) 1453, 2923
Eco53kI GAGCTC 2 cut(s) 1062, 2532
Eco57I CTGAAG 4 cut(s) 439, 1058, 1909, 2528
Eco88I CYCGRG 8 cut(s) 144, 392, 635, 1063, 1462, 1862, 2105, 2533
Eco91I GGTNACC 2 cut(s) 1166, 2636
EcoICRI GAGCTC 2 cut(s) 1062, 2532
EcoO109I RGGNCCY 1 cut(s) 1592
EcoO65I GGTNACC 2 cut(s) 1166, 2636
EcoRI GAATTC 2 cut(s) 62, 1641
EcoRV GATATC 2 cut(s) 1453, 2923
EcoT14I CCWWGG 2 cut(s) 1047, 2517
EcoT22I ATGCAT 1 cut(s) 1651
EcoT38I GRGCYC 2 cut(s) 1064, 2534
EgeI GGCGCC 2 cut(s) 334, 1804
EheI GGCGCC 2 cut(s) 334, 1804
ErhI CCWWGG 2 cut(s) 1047, 2517
Esp3I CGTCTC 2 cut(s) 268, 1738
FaqI GGGAC 4 cut(s) 618, 1309, 2088, 2779
FauI CCCGC 4 cut(s) 344, 1147, 1814, 2617
FbaI TGATCA 2 cut(s) 910, 2380
FokI GGATG 8 cut(s) 596, 983, 1111, 1412, 2066, 2453, 2581, 2882
FriOI GRGCYC 2 cut(s) 1064, 2534
FspBI CTAG 9 cut(s) 20, 809, 989, 1079, 1251, 2279, 2459, 2549, 2721
GlaI GCGC 6 cut(s) 245, 334, 1032, 1715, 1804, 2502
GsaI CCCAGC 1 cut(s) 95
GsuI CTGGAG 2 cut(s) 923, 2393
HaeII RGCGCY 4 cut(s) 247, 336, 1717, 1806
HaeIII GGCC 5 cut(s) 1043, 1052, 1594, 2513, 2522
HapII CCGG 3 cut(s) 1325, 1657, 2795
HgaI GACGC 6 cut(s) 477, 659, 1284, 1947, 2129, 2754
HhaI GCGC 6 cut(s) 246, 335, 1033, 1716, 1805, 2503
Hin1I GRCGYC 6 cut(s) 333, 690, 954, 1803, 2160, 2424
Hin6I GCGC 6 cut(s) 244, 333, 1031, 1714, 1803, 2501
HinP1I GCGC 6 cut(s) 244, 333, 1031, 1714, 1803, 2501
HincII GTYRAC 4 cut(s) 475, 1332, 1945, 2802
HindII GTYRAC 4 cut(s) 475, 1332, 1945, 2802
HindIII AAGCTT 2 cut(s) 701, 2171
HinfI GANTC 5 cut(s) 134, 175, 1068, 1493, 2538
HpaII CCGG 3 cut(s) 1325, 1657, 2795
HphI GGTGA 9 cut(s) 96, 298, 786, 908, 1178, 1768, 2256, 2378, 2648
Hpy166II GTNNAC 4 cut(s) 475, 1332, 1945, 2802
Hpy8I GTNNAC 4 cut(s) 475, 1332, 1945, 2802
HpyCH4III ACNGT 9 cut(s) 59, 161, 538, 628, 1220, 1479, 2008, 2098, 2690
HpyF10VI GCNNNNNNNGC 6 cut(s) 868, 1049, 1437, 2338, 2519, 2907
HpyF3I CTNAG 3 cut(s) 371, 1583, 1841
Hsp92I GRCGYC 6 cut(s) 333, 690, 954, 1803, 2160, 2424
HspAI GCGC 6 cut(s) 244, 333, 1031, 1714, 1803, 2501
KasI GGCGCC 2 cut(s) 332, 1802
Ksp22I TGATCA 2 cut(s) 910, 2380
KspI CCGCGG 2 cut(s) 384, 1854
Kzo9I GATC 8 cut(s) 211, 709, 910, 1391, 1681, 2179, 2380, 2861
LguI GCTCTTC 2 cut(s) 1080, 2550
LmnI GCTCC 6 cut(s) 385, 748, 1023, 1855, 2218, 2493
Lsp1109I GCAGC 8 cut(s) 795, 883, 914, 1045, 2265, 2353, 2384, 2515
LweI GCATC 3 cut(s) 952, 1658, 2422
MaeI CTAG 9 cut(s) 20, 809, 989, 1079, 1251, 2279, 2459, 2549, 2721
MalI GATC 8 cut(s) 213, 711, 912, 1393, 1683, 2181, 2382, 2863
MbiI CCGCTC 2 cut(s) 368, 1838
MboI GATC 8 cut(s) 211, 709, 910, 1391, 1681, 2179, 2380, 2861
MfeI CAATTG 1 cut(s) 1544
MflI RGATCY 2 cut(s) 211, 1681
MhlI GDGCHC 6 cut(s) 159, 1020, 1064, 1477, 2490, 2534
MluI ACGCGT 2 cut(s) 486, 1956
Mly113I GGCGCC 2 cut(s) 333, 1803
MmeI TCCRAC 6 cut(s) 223, 990, 1027, 1541, 2460, 2497
Mph1103I ATGCAT 1 cut(s) 1651
MseI TTAA 7 cut(s) 239, 284, 1266, 1550, 1709, 1754, 2736
MslI CAYNNNNRTG 4 cut(s) 763, 948, 2233, 2418
MspA1I CMGCKG 4 cut(s) 383, 1036, 1853, 2506
MspI CCGG 3 cut(s) 1325, 1657, 2795
MspR9I CCNGG 2 cut(s) 1326, 2796
MunI CAATTG 1 cut(s) 1544
MvnI CGCG 6 cut(s) 383, 488, 1055, 1853, 1958, 2525
MwoI GCNNNNNNNGC 6 cut(s) 868, 1049, 1437, 2338, 2519, 2907
NarI GGCGCC 2 cut(s) 333, 1803
NciI CCSGG 2 cut(s) 1326, 2796
NcoI CCATGG 2 cut(s) 1047, 2517
NdeII GATC 8 cut(s) 211, 709, 910, 1391, 1681, 2179, 2380, 2861
NlaIV GGNNCC 7 cut(s) 213, 334, 994, 1539, 1683, 1804, 2464
NmeAIII GCCGAG 2 cut(s) 682, 2152
NmuCI GTSAC 6 cut(s) 979, 1007, 1166, 2449, 2477, 2636
NsiI ATGCAT 1 cut(s) 1651
NspI RCATGY 2 cut(s) 514, 1984
PaeI GCATGC 2 cut(s) 514, 1984
PaeR7I CTCGAG 4 cut(s) 392, 1063, 1862, 2533
PagI TCATGA 2 cut(s) 720, 2190
PaqCI CACCTGC 2 cut(s) 546, 2016
PciSI GCTCTTC 2 cut(s) 1080, 2550
PcsI WCGNNNNNNNCGW 4 cut(s) 272, 684, 1742, 2154
PfeI GAWTC 5 cut(s) 134, 175, 1068, 1493, 2538
PluTI GGCGCC 2 cut(s) 336, 1806
PshBI ATTAAT 2 cut(s) 1266, 2736
PsiI TTATAA 4 cut(s) 623, 699, 2093, 2169
Psp124BI GAGCTC 2 cut(s) 1064, 2534
PspEI GGTNACC 2 cut(s) 1166, 2636
PspFI CCCAGC 1 cut(s) 91
PspN4I GGNNCC 7 cut(s) 213, 334, 994, 1539, 1683, 1804, 2464
PspPI GGNCC 1 cut(s) 1592
PstI CTGCAG 4 cut(s) 785, 904, 2255, 2374
PstNI CAGNNNCTG 4 cut(s) 908, 1354, 2378, 2824
PsuI RGATCY 2 cut(s) 211, 1681
PvuII CAGCTG 2 cut(s) 1036, 2506
RsaI GTAC 4 cut(s) 163, 1201, 1481, 2671
RsaNI GTAC 4 cut(s) 162, 1200, 1480, 2670
RseI CAYNNNNRTG 4 cut(s) 763, 948, 2233, 2418
SacI GAGCTC 2 cut(s) 1064, 2534
SacII CCGCGG 2 cut(s) 384, 1854
SapI GCTCTTC 2 cut(s) 1080, 2550
SaqAI TTAA 7 cut(s) 239, 284, 1266, 1550, 1709, 1754, 2736
Sau3AI GATC 8 cut(s) 211, 709, 910, 1391, 1681, 2179, 2380, 2861
Sau96I GGNCC 1 cut(s) 1592
ScaI AGTACT 2 cut(s) 1201, 2671
ScrFI CCNGG 2 cut(s) 1326, 2796
SduI GDGCHC 6 cut(s) 159, 1020, 1064, 1477, 2490, 2534
SfaNI GCATC 3 cut(s) 952, 1658, 2422
SfcI CTRYAG 4 cut(s) 781, 900, 2251, 2370
SfiI GGCCNNNNNGGCC 2 cut(s) 1049, 2519
SfoI GGCGCC 2 cut(s) 334, 1804
Sfr274I CTCGAG 4 cut(s) 392, 1063, 1862, 2533
Sfr303I CCGCGG 2 cut(s) 384, 1854
SgrBI CCGCGG 2 cut(s) 384, 1854
SlaI CTCGAG 4 cut(s) 392, 1063, 1862, 2533
SmiMI CAYNNNNRTG 4 cut(s) 763, 948, 2233, 2418
SmlI CTYRAG 4 cut(s) 392, 1063, 1862, 2533
SmoI CTYRAG 4 cut(s) 392, 1063, 1862, 2533
SphI GCATGC 2 cut(s) 514, 1984
SspDI GGCGCC 2 cut(s) 332, 1802
SspMI CTAG 9 cut(s) 20, 809, 989, 1079, 1251, 2279, 2459, 2549, 2721
SstI GAGCTC 2 cut(s) 1064, 2534
StyD4I CCNGG 2 cut(s) 1324, 2794
StyI CCWWGG 2 cut(s) 1047, 2517
TaaI ACNGT 9 cut(s) 59, 161, 538, 628, 1220, 1479, 2008, 2098, 2690
TatI WGTACW 4 cut(s) 161, 1199, 1479, 2669
TauI GCSGC 9 cut(s) 368, 383, 888, 1055, 1790, 1838, 1853, 2358, 2525
TfiI GAWTC 5 cut(s) 134, 175, 1068, 1493, 2538
Tru1I TTAA 7 cut(s) 239, 284, 1266, 1550, 1709, 1754, 2736
Tru9I TTAA 7 cut(s) 239, 284, 1266, 1550, 1709, 1754, 2736
TscAI CASTG 4 cut(s) 222, 904, 1692, 2374
TseFI GTSAC 6 cut(s) 979, 1007, 1166, 2449, 2477, 2636
TseI GCWGC 8 cut(s) 783, 871, 902, 1033, 2253, 2341, 2372, 2503
Tsp45I GTSAC 6 cut(s) 979, 1007, 1166, 2449, 2477, 2636
TspDTI ATGAA 7 cut(s) 57, 1115, 1178, 1556, 1634, 2585, 2648
TspRI CASTG 4 cut(s) 222, 904, 1692, 2374
VspI ATTAAT 2 cut(s) 1266, 2736
XapI RAATTY 3 cut(s) 62, 1641, 1673
XbaI TCTAGA 2 cut(s) 808, 2278
XceI RCATGY 2 cut(s) 514, 1984
XhoI CTCGAG 4 cut(s) 392, 1063, 1862, 2533
XspI CTAG 9 cut(s) 20, 809, 989, 1079, 1251, 2279, 2459, 2549, 2721
ZraI GACGTC 4 cut(s) 691, 955, 2161, 2425
ZrmI AGTACT 2 cut(s) 1201, 2671
Zsp2I ATGCAT 1 cut(s) 1651
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.