Rorug02G0149100

Belongs to the NPH3 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0013082
Physical Location & Seq
Forward (+)
13106638 .. 13107803
1166 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0149100.1

Sequence Viewer

Length: 660 bp
ATGGCAAACACCAAGGTACCCAAGACGACACATGATCCTATGAGCCAAAAGTTGGTAGCTCTTTCCTCCGAGCTCCTTTTTGGCATAATGGGGTCTTGCGTCGCTCATATGCAAGCTCTTCTATTTGGCCAGGGGTGGCTCATTGGTTGTGGGAGACCAGTGTTGTTCTGGCGAGATAATTTCATGGGTAGGCCACTTCTTGATTTTTTTGGGAATAATAATGTAGGCTTGGCTGCTCTCATGGATGGGTTGGTGGCTGAATATCTTCATAATGGAGCTTGGAATTTCCCCTCCTTGCTTCAAATTCATTATCCAGACCTCAGTGATTTAATTAGTACTGTTCCTGTTGCTACGTCCCCGGTGCCAGACAAATTGATTTGGGTTCCTTCCGCATCAGGTGAGTTAACTGTGGAAGAGGCTTTTCATTTTCTTCATCCACATCTTCCTCAGGCAAATTGGGGTAAGCTTATATGGTCAAAATACTTTACTCCTCGTATCTCTCTTCATTCATGGAAGGTGCTATGTGGTAAGGTGTTGTCAGAAGATGTATTACAACGGCATGGAATTGCCTTGGCATCTCGTTGTGTCCTTTGTGGGTTGGATGAGACTTATTTTGGGCCACATACAAGCTTCTACAAGCTTCTAGTAGATTGGCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB NPH3

Protein Analysis

219

Amino Acids

24.44

Weight (kDa)

6.53

Isoelectric Point (pI)

31.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 136 - 203 7e-12 zinc-binding in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013082)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G49900 AT3G49900
fragaria_vesca FvH4_1g17650 FvH4_1g17650
malus_domestica MD02G1185300.v1.1
prunus_persica Prupe.6G221500_v2.0.a1
pyrus_communis pycom02g15020
rosa_chinensis RchiOBHm_Chr2g0107971
rosa_laevigata RLG00000017630
rosa_multiflora Rmu_co8394919.1_g000001 Rmu_sc0001484.1_g000029
rosa_roxburghii Rroxscaffold_2G00135770
rosa_rugosa Rorug02G0149100
rosa_samantha Rh2AG198400 Rh2BG211200 Rh2CG203000 Rh2DG206000
rosa_wichuraiana Rw2G015740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 16
AccB1I GGYRCC 2 cut(s) 16, 361
AccB7I CCANNNNNTGG 1 cut(s) 52
AciI CCGC 1 cut(s) 390
AclWI GGATC 1 cut(s) 29
AcoI YGGCCR 1 cut(s) 127
AcsI RAATTY 2 cut(s) 283, 303
AfaI GTAC 2 cut(s) 18, 337
AfiI CCNNNNNNNGG 1 cut(s) 52
AgsI TTSAA 1 cut(s) 302
AjnI CCWGG 1 cut(s) 129
AluBI AGCT 7 cut(s) 59, 73, 116, 278, 466, 630, 640
AluI AGCT 7 cut(s) 59, 73, 116, 278, 466, 630, 640
Alw21I GWGCWC 1 cut(s) 75
Alw26I GTCTC 2 cut(s) 148, 599
AlwI GGATC 1 cut(s) 29
AoxI GGCC 3 cut(s) 127, 191, 617
ApeKI GCWGC 1 cut(s) 233
ApoI RAATTY 2 cut(s) 283, 303
Asp700I GAANNNNTTC 1 cut(s) 264
Asp718I GGTACC 1 cut(s) 16
AspS9I GGNCC 1 cut(s) 617
AsuC2I CCSGG 1 cut(s) 359
AsuHPI GGTGA 1 cut(s) 410
AxyI CCTNAGG 1 cut(s) 447
BaeI ACNNNNGTAYC 1 cut(s) 33
BalI TGGCCA 1 cut(s) 129
BanI GGYRCC 2 cut(s) 16, 361
BanII GRGCYC 1 cut(s) 75
BarI GAAGNNNNNNTAC 2 cut(s) 534, 566
Bbv12I GWGCWC 1 cut(s) 75
BbvI GCAGC 1 cut(s) 220
BccI CCATC 1 cut(s) 239
BceAI ACGGC 1 cut(s) 572
BciT130I CCWGG 1 cut(s) 131
BcnI CCSGG 1 cut(s) 359
BcoDI GTCTC 2 cut(s) 148, 599
BfaI CTAG 1 cut(s) 644
BfmI CTRYAG 1 cut(s) 656
BisI GCNGC 1 cut(s) 234
BlsI GCNGC 1 cut(s) 235
BmcAI AGTACT 1 cut(s) 337
Bme1390I CCNGG 2 cut(s) 131, 359
BmgT120I GGNCC 1 cut(s) 617
BmiI GGNNCC 3 cut(s) 18, 363, 384
BmrFI CCNGG 2 cut(s) 131, 359
BmsI GCATC 2 cut(s) 401, 584
BpuMI CCSGG 1 cut(s) 359
BsaI GGTCTC 1 cut(s) 148
BsaJI CCNNGG 4 cut(s) 12, 130, 357, 570
Bsc4I CCNNNNNNNGG 1 cut(s) 52
Bse1I ACTGG 1 cut(s) 158
Bse21I CCTNAGG 1 cut(s) 447
BseBI CCWGG 1 cut(s) 131
BseDI CCNNGG 4 cut(s) 12, 130, 357, 570
BseGI GGATG 3 cut(s) 250, 433, 607
BseLI CCNNNNNNNGG 1 cut(s) 52
BseMII CTCAG 2 cut(s) 334, 461
BseNI ACTGG 1 cut(s) 158
BseRI GAGGAG 1 cut(s) 480
BseXI GCAGC 1 cut(s) 220
BshFI GGCC 3 cut(s) 129, 193, 619
BshNI GGYRCC 2 cut(s) 16, 361
BsiHKAI GWGCWC 1 cut(s) 75
BsiSI CCGG 1 cut(s) 359
BslFI GGGAC 1 cut(s) 340
BslI CCNNNNNNNGG 1 cut(s) 52
BsmAI GTCTC 2 cut(s) 148, 599
BsmFI GGGAC 1 cut(s) 340
BsnI GGCC 3 cut(s) 129, 193, 619
Bso31I GGTCTC 1 cut(s) 148
Bsp1286I GDGCHC 1 cut(s) 75
Bsp143I GATC 1 cut(s) 34
BspACI CCGC 1 cut(s) 390
BspANI GGCC 3 cut(s) 129, 193, 619
BspCNI CTCAG 2 cut(s) 333, 460
BspLI GGNNCC 3 cut(s) 18, 363, 384
BspPI GGATC 1 cut(s) 29
BspQI GCTCTTC 1 cut(s) 123
BspT107I GGYRCC 2 cut(s) 16, 361
BspTNI GGTCTC 1 cut(s) 148
BsrI ACTGG 1 cut(s) 158
BssECI CCNNGG 4 cut(s) 12, 130, 357, 570
BssMI GATC 1 cut(s) 34
BssT1I CCWWGG 2 cut(s) 12, 570
Bst2UI CCWGG 1 cut(s) 131
Bst4CI ACNGT 2 cut(s) 340, 409
Bst6I CTCTTC 3 cut(s) 123, 408, 507
BstC8I GCNNGC 1 cut(s) 114
BstDEI CTNAG 2 cut(s) 320, 447
BstF5I GGATG 3 cut(s) 250, 433, 607
BstKTI GATC 1 cut(s) 37
BstMAI GTCTC 2 cut(s) 148, 599
BstMBI GATC 1 cut(s) 34
BstNI CCWGG 1 cut(s) 131
BstSCI CCNGG 2 cut(s) 129, 357
BstSFI CTRYAG 1 cut(s) 656
BstV1I GCAGC 1 cut(s) 220
Bsu36I CCTNAGG 1 cut(s) 447
BsuRI GGCC 3 cut(s) 129, 193, 619
BtsCI GGATG 3 cut(s) 250, 433, 607
BtsIMutI CAGTG 2 cut(s) 165, 328
Cac8I GCNNGC 1 cut(s) 114
Cfr13I GGNCC 1 cut(s) 617
CseI GACGC 1 cut(s) 88
Csp6I GTAC 2 cut(s) 17, 336
CviAII CATG 5 cut(s) 32, 184, 241, 510, 560
CviQI GTAC 2 cut(s) 17, 336
DdeI CTNAG 2 cut(s) 320, 447
DpnI GATC 1 cut(s) 36
DpnII GATC 1 cut(s) 34
EaeI YGGCCR 1 cut(s) 127
Eam1104I CTCTTC 3 cut(s) 123, 408, 507
EarI CTCTTC 3 cut(s) 123, 408, 507
Ecl136II GAGCTC 1 cut(s) 73
Eco130I CCWWGG 2 cut(s) 12, 570
Eco24I GRGCYC 1 cut(s) 75
Eco31I GGTCTC 1 cut(s) 148
Eco53kI GAGCTC 1 cut(s) 73
Eco81I CCTNAGG 1 cut(s) 447
EcoICRI GAGCTC 1 cut(s) 73
EcoRII CCWGG 1 cut(s) 129
EcoT14I CCWWGG 2 cut(s) 12, 570
EcoT38I GRGCYC 1 cut(s) 75
ErhI CCWWGG 2 cut(s) 12, 570
FaeI CATG 5 cut(s) 35, 187, 244, 513, 563
FaqI GGGAC 1 cut(s) 340
FatI CATG 5 cut(s) 31, 183, 240, 509, 559
FauNDI CATATG 1 cut(s) 108
Fnu4HI GCNGC 1 cut(s) 234
FokI GGATG 3 cut(s) 257, 420, 614
FriOI GRGCYC 1 cut(s) 75
Fsp4HI GCNGC 1 cut(s) 234
FspBI CTAG 1 cut(s) 644
GluI GCNGC 1 cut(s) 234
HaeIII GGCC 3 cut(s) 129, 193, 619
HapII CCGG 1 cut(s) 359
HgaI GACGC 1 cut(s) 88
Hin1II CATG 5 cut(s) 35, 187, 244, 513, 563
HincII GTYRAC 1 cut(s) 405
HindII GTYRAC 1 cut(s) 405
HindIII AAGCTT 3 cut(s) 464, 628, 638
HpaI GTTAAC 1 cut(s) 405
HpaII CCGG 1 cut(s) 359
HphI GGTGA 1 cut(s) 410
Hpy166II GTNNAC 1 cut(s) 405
Hpy188I TCNGA 2 cut(s) 70, 541
Hpy188III TCNNGA 2 cut(s) 200, 314
Hpy8I GTNNAC 1 cut(s) 405
Hpy99I CGWCG 1 cut(s) 104
HpyAV CCTTC 2 cut(s) 396, 508
HpyCH4III ACNGT 2 cut(s) 340, 409
HpyCH4IV ACGT 1 cut(s) 353
HpyCH4V TGCA 1 cut(s) 112
HpyF3I CTNAG 2 cut(s) 320, 447
HpySE526I ACGT 1 cut(s) 353
Hsp92II CATG 5 cut(s) 35, 187, 244, 513, 563
KpnI GGTACC 1 cut(s) 20
KspAI GTTAAC 1 cut(s) 405
Kzo9I GATC 1 cut(s) 34
LguI GCTCTTC 1 cut(s) 123
LmnI GCTCC 2 cut(s) 78, 275
Lsp1109I GCAGC 1 cut(s) 220
LweI GCATC 2 cut(s) 401, 584
MaeI CTAG 1 cut(s) 644
MaeII ACGT 1 cut(s) 353
MalI GATC 1 cut(s) 36
MboI GATC 1 cut(s) 34
MboII GAAGA 7 cut(s) 110, 257, 422, 425, 434, 494, 554
MhlI GDGCHC 1 cut(s) 75
MlsI TGGCCA 1 cut(s) 129
MluCI AATT 7 cut(s) 178, 283, 303, 330, 371, 454, 564
MluNI TGGCCA 1 cut(s) 129
MmeI TCCRAC 1 cut(s) 579
MnlI CCTC 6 cut(s) 76, 301, 329, 409, 456, 501
Mox20I TGGCCA 1 cut(s) 129
MroXI GAANNNNTTC 1 cut(s) 264
MscI TGGCCA 1 cut(s) 129
MseI TTAA 2 cut(s) 329, 404
Msp20I TGGCCA 1 cut(s) 129
MspI CCGG 1 cut(s) 359
MspR9I CCNGG 2 cut(s) 131, 359
MvaI CCWGG 1 cut(s) 131
NciI CCSGG 1 cut(s) 359
NdeI CATATG 1 cut(s) 108
NdeII GATC 1 cut(s) 34
NlaIII CATG 5 cut(s) 35, 187, 244, 513, 563
NlaIV GGNNCC 3 cut(s) 18, 363, 384
PciSI GCTCTTC 1 cut(s) 123
PdmI GAANNNNTTC 1 cut(s) 264
PflMI CCANNNNNTGG 1 cut(s) 52
PkrI GCNGC 1 cut(s) 235
Psp124BI GAGCTC 1 cut(s) 75
Psp6I CCWGG 1 cut(s) 129
PspGI CCWGG 1 cut(s) 129
PspN4I GGNNCC 3 cut(s) 18, 363, 384
PspPI GGNCC 1 cut(s) 617
RsaI GTAC 2 cut(s) 18, 337
RsaNI GTAC 2 cut(s) 17, 336
SacI GAGCTC 1 cut(s) 75
SapI GCTCTTC 1 cut(s) 123
SaqAI TTAA 2 cut(s) 329, 404
SatI GCNGC 1 cut(s) 234
Sau3AI GATC 1 cut(s) 34
Sau96I GGNCC 1 cut(s) 617
ScaI AGTACT 1 cut(s) 337
ScrFI CCNGG 2 cut(s) 131, 359
SduI GDGCHC 1 cut(s) 75
SfaNI GCATC 2 cut(s) 401, 584
SfcI CTRYAG 1 cut(s) 656
Sse9I AATT 7 cut(s) 178, 283, 303, 330, 371, 454, 564
SsiI CCGC 1 cut(s) 390
SspMI CTAG 1 cut(s) 644
SstI GAGCTC 1 cut(s) 75
StyD4I CCNGG 2 cut(s) 129, 357
StyI CCWWGG 2 cut(s) 12, 570
TaaI ACNGT 2 cut(s) 340, 409
TaiI ACGT 1 cut(s) 356
TasI AATT 7 cut(s) 178, 283, 303, 330, 371, 454, 564
TatI WGTACW 1 cut(s) 335
Tru1I TTAA 2 cut(s) 329, 404
Tru9I TTAA 2 cut(s) 329, 404
TscAI CASTG 2 cut(s) 165, 328
TseI GCWGC 1 cut(s) 233
TspDTI ATGAA 7 cut(s) 172, 257, 296, 413, 422, 494, 498
TspRI CASTG 2 cut(s) 165, 328
Van91I CCANNNNNTGG 1 cut(s) 52
XapI RAATTY 2 cut(s) 283, 303
XcmI CCANNNNNNNNNTGG 1 cut(s) 165
XmnI GAANNNNTTC 1 cut(s) 264
XspI CTAG 1 cut(s) 644
ZrmI AGTACT 1 cut(s) 337
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.