Rmu_co8394919.1_g000001

Belongs to the NPH3 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8394919.1
OG0013082
Physical Location & Seq
Forward (+)
1 .. 1151
1151 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8394919.1_g000001.1.cds

Sequence Viewer

Length: 1001 bp
ccgtcaacagagactacgcgtccgtagtgtttaggtcttgcatgccgttacttcccgaagccgaaacggtggcgtttctcgtgagcaggtgcattgaggcgttggctctatcggatgacggcgacagccgtgtggattggctacatgaggttataacggtgtgtcccgaggactttcagatagtcgccgaggtcattcagcgtcgttacggaagccacgacgtcgtttataagcttgttgatctttatatcatgagatataatggcaaaattacagaggagcagaaagcacagatatgcagttccatagactgcagcaagctctcaccacaagtccttctagaagcggtgcaaaacccgataatgccgttacgtttcgttgtccgagccatgctcatcgagcagctcaacactcgccgcaccattctcactgcagctactgatcatcaccactcccaacttcctctcctccagcatcattatgacgtcagcaaatccgaccctgccccagtcactacactaggttccatcctccaacgtgacaatgtgctccgccaatcggcgcagctgaaggccaccatggccgcgacgagctcgagaatcgaaaccctagaagaagagctgaatgggatgaagaagttgctggaagagtgtcataatgagaagaatgataggagtataatggcgggggctggtggtgaccgcaagtctgccagctttcattatgggagtagtgatgagaataatcacagtaagttgataacaaagtctgcttcttcgtctagttttcggctcattaattttagacgcaaggagaaaacggaggggactaattggtcatcttgtaatggaacgccggggttgacgaagagtattagtcagaggctgattagtggattgaagaaagcatttcgggtttcaggatcaaaggatgtctcgcaggaaaaaatcgtgagctatggcgatggtggcaataataaggatatcattgtgattgaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB NPH3

Protein Analysis

332

Amino Acids

37.01

Weight (kDa)

7.25

Isoelectric Point (pI)

55.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013082)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G49900 AT3G49900
fragaria_vesca FvH4_1g17650 FvH4_1g17650
malus_domestica MD02G1185300.v1.1
prunus_persica Prupe.6G221500_v2.0.a1
pyrus_communis pycom02g15020
rosa_chinensis RchiOBHm_Chr2g0107971
rosa_laevigata RLG00000017630
rosa_multiflora Rmu_co8394919.1_g000001 Rmu_sc0001484.1_g000029
rosa_roxburghii Rroxscaffold_2G00135770
rosa_rugosa Rorug02G0149100
rosa_samantha Rh2AG198400 Rh2BG211200 Rh2CG203000 Rh2DG206000
rosa_wichuraiana Rw2G015740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 154, 230
AarI CACCTGC 1 cut(s) 77
AasI GACNNNNNNGTC 1 cut(s) 834
AatII GACGTC 2 cut(s) 224, 488
Acc36I ACCTGC 1 cut(s) 77
AccII CGCG 2 cut(s) 19, 586
AciI CCGC 6 cut(s) 346, 417, 552, 584, 685, 702
AclWI GGATC 1 cut(s) 930
AcoI YGGCCR 1 cut(s) 581
AcuI CTGAAG 1 cut(s) 589
AcyI GRCGYC 2 cut(s) 221, 485
AfiI CCNNNNNNNGG 1 cut(s) 558
AflIII ACRYGT 1 cut(s) 17
AgsI TTSAA 2 cut(s) 900, 997
AhdI GACNNNNNGTC 2 cut(s) 18, 705
AluBI AGCT 9 cut(s) 234, 321, 405, 436, 567, 593, 621, 716, 956
AluI AGCT 9 cut(s) 234, 321, 405, 436, 567, 593, 621, 716, 956
Alw21I GWGCWC 2 cut(s) 551, 595
Alw26I GTCTC 2 cut(s) 5, 939
AlwI GGATC 1 cut(s) 930
AlwNI CAGNNNCTG 2 cut(s) 439, 885
Ama87I CYCGRG 2 cut(s) 166, 594
AoxI GGCC 2 cut(s) 572, 581
ApeKI GCWGC 4 cut(s) 314, 402, 433, 564
AseI ATTAAT 1 cut(s) 797
AspLEI GCGC 1 cut(s) 564
AsuC2I CCSGG 1 cut(s) 857
AsuHPI GGTGA 3 cut(s) 317, 439, 709
AvaI CYCGRG 2 cut(s) 166, 594
BanII GRGCYC 1 cut(s) 595
BauI CACGAG 1 cut(s) 79
Bbv12I GWGCWC 2 cut(s) 551, 595
BbvI GCAGC 4 cut(s) 326, 414, 445, 576
BccI CCATC 2 cut(s) 535, 958
BceAI ACGGC 4 cut(s) 30, 113, 135, 351
BclI TGATCA 1 cut(s) 441
BcnI CCSGG 1 cut(s) 857
BcoDI GTCTC 2 cut(s) 5, 939
BfaI CTAG 4 cut(s) 340, 520, 610, 782
BfmI CTRYAG 2 cut(s) 312, 431
BfuAI ACCTGC 1 cut(s) 77
BglI GCCNNNNNGGC 1 cut(s) 580
BisI GCNGC 6 cut(s) 315, 403, 417, 434, 565, 584
BlsI GCNGC 6 cut(s) 316, 404, 418, 435, 566, 585
Bme1390I CCNGG 1 cut(s) 857
BmeRI GACNNNNNGTC 2 cut(s) 18, 705
BmeT110I CYCGRG 2 cut(s) 166, 594
BmiI GGNNCC 1 cut(s) 525
BmrFI CCNGG 1 cut(s) 857
BmrI ACTGGG 1 cut(s) 502
BmsI GCATC 1 cut(s) 483
BmuI ACTGGG 1 cut(s) 502
BplI GAGNNNNNCTC 2 cut(s) 377, 409
BpmI CTGGAG 1 cut(s) 454
BpuMI CCSGG 1 cut(s) 857
BsaHI GRCGYC 2 cut(s) 221, 485
BsaJI CCNNGG 4 cut(s) 167, 188, 578, 856
BsaXI ACNNNNNCTCC 2 cut(s) 449, 479
Bsc4I CCNNNNNNNGG 1 cut(s) 558
Bse1I ACTGG 1 cut(s) 508
BseDI CCNNGG 4 cut(s) 167, 188, 578, 856
BseGI GGATG 4 cut(s) 120, 527, 635, 936
BseLI CCNNNNNNNGG 1 cut(s) 558
BseNI ACTGG 1 cut(s) 508
BseRI GAGGAG 2 cut(s) 292, 457
BseXI GCAGC 4 cut(s) 326, 414, 445, 576
Bsh1236I CGCG 2 cut(s) 19, 586
BshFI GGCC 2 cut(s) 574, 583
BsiHKAI GWGCWC 2 cut(s) 551, 595
BsiHKCI CYCGRG 2 cut(s) 166, 594
BsiSI CCGG 1 cut(s) 856
BslFI GGGAC 2 cut(s) 149, 840
BslI CCNNNNNNNGG 1 cut(s) 558
BsmAI GTCTC 2 cut(s) 5, 939
BsmFI GGGAC 2 cut(s) 149, 840
BsnI GGCC 2 cut(s) 574, 583
BsoBI CYCGRG 2 cut(s) 166, 594
Bsp1286I GDGCHC 2 cut(s) 551, 595
Bsp143I GATC 3 cut(s) 240, 441, 922
Bsp19I CCATGG 1 cut(s) 578
BspACI CCGC 6 cut(s) 346, 417, 552, 584, 685, 702
BspANI GGCC 2 cut(s) 574, 583
BspFNI CGCG 2 cut(s) 19, 586
BspHI TCATGA 1 cut(s) 251
BspLI GGNNCC 1 cut(s) 525
BspMAI CTGCAG 2 cut(s) 316, 435
BspMI ACCTGC 1 cut(s) 77
BspPI GGATC 1 cut(s) 930
BspQI GCTCTTC 1 cut(s) 611
BsrI ACTGG 1 cut(s) 508
BssECI CCNNGG 4 cut(s) 167, 188, 578, 856
BssMI GATC 3 cut(s) 240, 441, 922
BssNI GRCGYC 2 cut(s) 221, 485
BssSI CACGAG 1 cut(s) 79
BssT1I CCWWGG 1 cut(s) 578
Bst2BI CACGAG 1 cut(s) 79
Bst4CI ACNGT 3 cut(s) 69, 159, 751
Bst6I CTCTTC 3 cut(s) 611, 641, 862
BstACI GRCGYC 2 cut(s) 221, 485
BstC8I GCNNGC 3 cut(s) 43, 319, 714
BstDSI CCRYGG 1 cut(s) 578
BstEII GGTNACC 1 cut(s) 697
BstF5I GGATG 4 cut(s) 120, 527, 635, 936
BstFNI CGCG 2 cut(s) 19, 586
BstHHI GCGC 1 cut(s) 564
BstKTI GATC 3 cut(s) 243, 444, 925
BstMAI GTCTC 2 cut(s) 5, 939
BstMBI GATC 3 cut(s) 240, 441, 922
BstMWI GCNNNNNNNGC 3 cut(s) 399, 580, 968
BstNSI RCATGY 1 cut(s) 45
BstPI GGTNACC 1 cut(s) 697
BstSCI CCNGG 1 cut(s) 855
BstSFI CTRYAG 2 cut(s) 312, 431
BstUI CGCG 2 cut(s) 19, 586
BstV1I GCAGC 4 cut(s) 326, 414, 445, 576
BsuRI GGCC 2 cut(s) 574, 583
BtgI CCRYGG 1 cut(s) 578
BtgZI GCGATG 1 cut(s) 977
BtsCI GGATG 4 cut(s) 120, 527, 635, 936
BtsI GCAGTG 1 cut(s) 428
BtsIMutI CAGTG 1 cut(s) 428
BveI ACCTGC 1 cut(s) 77
Cac8I GCNNGC 3 cut(s) 43, 319, 714
CaiI CAGNNNCTG 2 cut(s) 439, 885
CciI TCATGA 1 cut(s) 251
CfoI GCGC 1 cut(s) 564
CseI GACGC 3 cut(s) 8, 190, 815
CviAII CATG 5 cut(s) 42, 145, 252, 390, 579
DpnI GATC 3 cut(s) 242, 443, 924
DpnII GATC 3 cut(s) 240, 441, 922
DrdI GACNNNNNNGTC 1 cut(s) 834
DriI GACNNNNNGTC 2 cut(s) 18, 705
DseDI GACNNNNNNGTC 1 cut(s) 834
EaeI YGGCCR 1 cut(s) 581
Eam1104I CTCTTC 3 cut(s) 611, 641, 862
Eam1105I GACNNNNNGTC 2 cut(s) 18, 705
EarI CTCTTC 3 cut(s) 611, 641, 862
EciI GGCGGA 1 cut(s) 541
Ecl136II GAGCTC 1 cut(s) 593
Eco130I CCWWGG 1 cut(s) 578
Eco24I GRGCYC 1 cut(s) 595
Eco32I GATATC 1 cut(s) 984
Eco53kI GAGCTC 1 cut(s) 593
Eco57I CTGAAG 1 cut(s) 589
Eco88I CYCGRG 2 cut(s) 166, 594
Eco91I GGTNACC 1 cut(s) 697
EcoICRI GAGCTC 1 cut(s) 593
EcoO65I GGTNACC 1 cut(s) 697
EcoRV GATATC 1 cut(s) 984
EcoT14I CCWWGG 1 cut(s) 578
EcoT38I GRGCYC 1 cut(s) 595
ErhI CCWWGG 1 cut(s) 578
FaeI CATG 5 cut(s) 45, 148, 255, 393, 582
FaqI GGGAC 2 cut(s) 149, 840
FatI CATG 5 cut(s) 41, 144, 251, 389, 578
FauI CCCGC 1 cut(s) 678
FbaI TGATCA 1 cut(s) 441
Fnu4HI GCNGC 6 cut(s) 315, 403, 417, 434, 565, 584
FokI GGATG 4 cut(s) 127, 514, 642, 943
FriOI GRGCYC 1 cut(s) 595
Fsp4HI GCNGC 6 cut(s) 315, 403, 417, 434, 565, 584
FspBI CTAG 4 cut(s) 340, 520, 610, 782
GlaI GCGC 1 cut(s) 563
GluI GCNGC 6 cut(s) 315, 403, 417, 434, 565, 584
GsuI CTGGAG 1 cut(s) 454
HaeIII GGCC 2 cut(s) 574, 583
HapII CCGG 1 cut(s) 856
HgaI GACGC 3 cut(s) 8, 190, 815
HhaI GCGC 1 cut(s) 564
Hin1I GRCGYC 2 cut(s) 221, 485
Hin1II CATG 5 cut(s) 45, 148, 255, 393, 582
Hin6I GCGC 1 cut(s) 562
HinP1I GCGC 1 cut(s) 562
HincII GTYRAC 2 cut(s) 6, 863
HindII GTYRAC 2 cut(s) 6, 863
HindIII AAGCTT 1 cut(s) 232
HinfI GANTC 1 cut(s) 599
HpaII CCGG 1 cut(s) 856
HphI GGTGA 3 cut(s) 317, 439, 709
Hpy166II GTNNAC 2 cut(s) 6, 863
Hpy188I TCNGA 5 cut(s) 114, 179, 385, 498, 881
Hpy188III TCNNGA 8 cut(s) 55, 81, 166, 252, 340, 596, 920, 951
Hpy8I GTNNAC 2 cut(s) 6, 863
Hpy99I CGWCG 4 cut(s) 206, 223, 226, 591
HpyAV CCTTC 2 cut(s) 346, 564
HpyCH4III ACNGT 3 cut(s) 69, 159, 751
HpyCH4IV ACGT 4 cut(s) 221, 372, 485, 537
HpyCH4V TGCA 6 cut(s) 41, 92, 299, 314, 351, 433
HpyF10VI GCNNNNNNNGC 3 cut(s) 399, 580, 968
HpySE526I ACGT 4 cut(s) 221, 372, 485, 537
Hsp92I GRCGYC 2 cut(s) 221, 485
Hsp92II CATG 5 cut(s) 45, 148, 255, 393, 582
HspAI GCGC 1 cut(s) 562
Ksp22I TGATCA 1 cut(s) 441
Kzo9I GATC 3 cut(s) 240, 441, 922
LguI GCTCTTC 1 cut(s) 611
LmnI GCTCC 2 cut(s) 279, 554
Lsp1109I GCAGC 4 cut(s) 326, 414, 445, 576
LweI GCATC 1 cut(s) 483
MaeI CTAG 4 cut(s) 340, 520, 610, 782
MaeII ACGT 4 cut(s) 221, 372, 485, 537
MaeIII GTNAC 6 cut(s) 47, 205, 368, 510, 538, 697
MalI GATC 3 cut(s) 242, 443, 924
MboI GATC 3 cut(s) 240, 441, 922
MboII GAAGA 8 cut(s) 625, 628, 645, 658, 675, 767, 879, 912
MhlI GDGCHC 2 cut(s) 551, 595
MluCI AATT 3 cut(s) 269, 798, 831
MluI ACGCGT 1 cut(s) 17
MmeI TCCRAC 2 cut(s) 521, 558
MseI TTAA 1 cut(s) 797
MslI CAYNNNNRTG 2 cut(s) 294, 479
MspA1I CMGCKG 1 cut(s) 567
MspI CCGG 1 cut(s) 856
MspR9I CCNGG 1 cut(s) 857
MvnI CGCG 2 cut(s) 19, 586
MwoI GCNNNNNNNGC 3 cut(s) 399, 580, 968
NciI CCSGG 1 cut(s) 857
NcoI CCATGG 1 cut(s) 578
NdeII GATC 3 cut(s) 240, 441, 922
NlaIII CATG 5 cut(s) 45, 148, 255, 393, 582
NlaIV GGNNCC 1 cut(s) 525
NmeAIII GCCGAG 1 cut(s) 213
NmuCI GTSAC 3 cut(s) 510, 538, 697
NspI RCATGY 1 cut(s) 45
PaeI GCATGC 1 cut(s) 45
PaeR7I CTCGAG 1 cut(s) 594
PagI TCATGA 1 cut(s) 251
PaqCI CACCTGC 1 cut(s) 77
PciSI GCTCTTC 1 cut(s) 611
PcsI WCGNNNNNNNCGW 1 cut(s) 215
PfeI GAWTC 1 cut(s) 599
PkrI GCNGC 6 cut(s) 316, 404, 418, 435, 566, 585
PshBI ATTAAT 1 cut(s) 797
PsiI TTATAA 2 cut(s) 154, 230
Psp124BI GAGCTC 1 cut(s) 595
PspEI GGTNACC 1 cut(s) 697
PspN4I GGNNCC 1 cut(s) 525
PstI CTGCAG 2 cut(s) 316, 435
PstNI CAGNNNCTG 2 cut(s) 439, 885
PvuII CAGCTG 1 cut(s) 567
RseI CAYNNNNRTG 2 cut(s) 294, 479
SacI GAGCTC 1 cut(s) 595
SapI GCTCTTC 1 cut(s) 611
SaqAI TTAA 1 cut(s) 797
SatI GCNGC 6 cut(s) 315, 403, 417, 434, 565, 584
Sau3AI GATC 3 cut(s) 240, 441, 922
ScrFI CCNGG 1 cut(s) 857
SduI GDGCHC 2 cut(s) 551, 595
SfaNI GCATC 1 cut(s) 483
SfcI CTRYAG 2 cut(s) 312, 431
SfiI GGCCNNNNNGGCC 1 cut(s) 580
Sfr274I CTCGAG 1 cut(s) 594
SlaI CTCGAG 1 cut(s) 594
SmiMI CAYNNNNRTG 2 cut(s) 294, 479
SmlI CTYRAG 1 cut(s) 594
SmoI CTYRAG 1 cut(s) 594
SphI GCATGC 1 cut(s) 45
Sse9I AATT 3 cut(s) 269, 798, 831
SsiI CCGC 6 cut(s) 346, 417, 552, 584, 685, 702
SspMI CTAG 4 cut(s) 340, 520, 610, 782
SstI GAGCTC 1 cut(s) 595
StyD4I CCNGG 1 cut(s) 855
StyI CCWWGG 1 cut(s) 578
TaaI ACNGT 3 cut(s) 69, 159, 751
TaiI ACGT 4 cut(s) 224, 375, 488, 540
TaqI TCGA 3 cut(s) 398, 595, 602
TasI AATT 3 cut(s) 269, 798, 831
TauI GCSGC 2 cut(s) 419, 586
TfiI GAWTC 1 cut(s) 599
Tru1I TTAA 1 cut(s) 797
Tru9I TTAA 1 cut(s) 797
TscAI CASTG 1 cut(s) 435
TseFI GTSAC 3 cut(s) 510, 538, 697
TseI GCWGC 4 cut(s) 314, 402, 433, 564
Tsp45I GTSAC 3 cut(s) 510, 538, 697
TspDTI ATGAA 2 cut(s) 646, 709
TspGWI ACGGA 3 cut(s) 12, 224, 835
TspRI CASTG 1 cut(s) 435
VspI ATTAAT 1 cut(s) 797
XbaI TCTAGA 1 cut(s) 339
XceI RCATGY 1 cut(s) 45
XhoI CTCGAG 1 cut(s) 594
XspI CTAG 4 cut(s) 340, 520, 610, 782
ZraI GACGTC 2 cut(s) 222, 486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.