Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0015650

Physical Location & Seq

Genomic Coordinates Reverse (-)

26106869 .. 26109286

Gene Structure 2418 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G278400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGAATTGCTTGCAGTCTTGGCCTGAGCCTATCGTTCGAGTCCAGTCCTTGGCAGAAAGCGGCATAACAGCCATCCCGGACCTCTACATCAAACCCCCCACCAAACGACCCTCACTTCTTCCCGCAAACTGCAACCAAGCTGAAGTGGAAGTCAACATCCCGGTCATTGACCTCCAGAACCTGCTCAGCCAGGAGGAGAGCCTGCGCGAAACGACGCTGCGTTCGATCTCGAGCGCCTGCAGGGAGTGGGGGTTTTTTCAGGTGGTGAACCACGGGGTGAGCGAGGAGCTGATGAAACGGGCGAGGGACACATGGCGCGAGTTTTTCGGGCTGCCGCTGGATGTGAAGCAGGAGTATTCGAACAAGCCGAGTACGTACGAAGGGTACGGGAGTCGGCTGGGGGTTGAGAAGGGGGCTATTTTGGACTGGAGCGACTATTACTTTCTCCATTATATGCCCGCCTCCCTCAGAAACCATAGCAAGTGGCCTGCCCTCCCATCTTCATGCAGGAAACTGATTGAAGAATACAGTGAGGCAACTGTAAGACTATGTGGAACACTGATGAAGCTCCTGTCACAAAACCTTGGGCTAGAGGAAGACCAGCTTCTCAACGCATTTGGAGGAGAAGAAAACATTGGGGCATGTTTGAGGGTCAACTTCTACCCAAAATGCCCCCAGCCAGACCTAACCCTTGGCCTCTCAGAACACTCTGACCCAGGTGGCTTGACCCTTCTTTTGCCTGATGAAAATGTGGCTGGGCTTCAAGTGCGCAAAGGGCAGAATTGGGTTACAGTGAAACCAGTTCCAAATGCCTTCATTGTGAACATTGGAGACCAAATGCAGGTGCTGAGCAATGCAATTTACAAGAGCGTGGAGCACAGAGTGATTGTAAATTCAGTCAAAGACAGGGTCTCTTTGGCCTTGTTTTATAACCCAAAGAGTGATTTGTTGATCCAACCTGCCAAGAAGCTTGTCACAAAGGACCGTCCTGCCCTTTATGCACCCATGACATTTGATCAGTATCGACTTTTCATTAGGACGAAGGGGCCTTGTGGCAAGGCACAAGTTGAATCGTTAAAATCCTATGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0009966 GO:0010646 GO:0016787 GO:0016810 GO:0023051 GO:0044424 GO:0044444 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0065007 GO:0120091 GO:2000022

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

364

Amino Acids

40.89

Weight (kDa)

6.56

Isoelectric Point (pI)

51.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015650)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g11360
malus_domestica	MD04G1154400.v1.1 MD12G1168100.v1.1
prunus_persica	Prupe.6G278400_v2.0.a1
pyrus_communis	pycom04g13930 pycom12g15960
rosa_chinensis	RchiOBHm_Chr3g0462961
rosa_laevigata	RLG00000024821
rosa_multiflora	Rmu_sc0000766.1_g000023
rosa_roxburghii	Rroxscaffold_6G00417080
rosa_rugosa	Rorug03G0060300
rosa_samantha	Rh3AG118500 Rh3BG123500 Rh3CG125200 Rh3DG124200
rosa_wichuraiana	Rw3G010050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	930
AarI	CACCTGC	1 cut(s)	832
Acc16I	TGCGCA	1 cut(s)	770
Acc36I	ACCTGC	3 cut(s)	189, 832, 967
AccB7I	CCANNNNNTGG	1 cut(s)	49
AccII	CGCG	2 cut(s)	207, 318
AciI	CCGC	4 cut(s)	60, 123, 335, 459
AclWI	GGATC	1 cut(s)	946
AcsI	RAATTY	1 cut(s)	892
AcuI	CTGAAG	1 cut(s)	162
AdeI	CACNNNGTG	2 cut(s)	277, 883
AfaI	GTAC	3 cut(s)	373, 377, 386
AfiI	CCNNNNNNNGG	2 cut(s)	49, 841
AgsI	TTSAA	3 cut(s)	521, 764, 1070
AjnI	CCWGG	2 cut(s)	189, 715
AjuI	GAANNNNNNNTTGG	2 cut(s)	618, 650
AluBI	AGCT	5 cut(s)	140, 289, 568, 604, 970
AluI	AGCT	5 cut(s)	140, 289, 568, 604, 970
Alw21I	GWGCWC	1 cut(s)	879
Alw26I	GTCTC	2 cut(s)	825, 916
AlwI	GGATC	1 cut(s)	946
AlwNI	CAGNNNCTG	2 cut(s)	181, 847
Ama87I	CYCGRG	1 cut(s)	229
AoxI	GGCC	5 cut(s)	20, 485, 694, 918, 1046
ApeKI	GCWGC	2 cut(s)	217, 331
ApoI	RAATTY	1 cut(s)	892
ArsI	GACNNNNNNTTYG	6 cut(s)	205, 237, 718, 750, 894, 926
AspLEI	GCGC	4 cut(s)	207, 236, 318, 771
AspS9I	GGNCC	3 cut(s)	79, 982, 1046
AsuC2I	CCSGG	2 cut(s)	77, 161
AsuHPI	GGTGA	2 cut(s)	277, 289
AsuII	TTCGAA	1 cut(s)	359
AvaI	CYCGRG	1 cut(s)	229
AvaII	GGWCC	2 cut(s)	79, 982
BaeI	ACNNNNGTAYC	2 cut(s)	376, 409
BbsI	GAAGAC	1 cut(s)	603
Bbv12I	GWGCWC	1 cut(s)	879
BbvI	GCAGC	2 cut(s)	204, 318
BccI	CCATC	2 cut(s)	80, 505
BciT130I	CCWGG	2 cut(s)	191, 717
BclI	TGATCA	1 cut(s)	1015
BcnI	CCSGG	2 cut(s)	77, 161
BcoDI	GTCTC	2 cut(s)	825, 916
BfaI	CTAG	1 cut(s)	590
BfmI	CTRYAG	1 cut(s)	238
BfoI	RGCGCY	1 cut(s)	237
BfuAI	ACCTGC	3 cut(s)	189, 832, 967
BisI	GCNGC	4 cut(s)	61, 218, 332, 335
BlpI	GCTNAGC	2 cut(s)	185, 848
BlsI	GCNGC	4 cut(s)	62, 219, 333, 336
Bme1390I	CCNGG	4 cut(s)	77, 161, 191, 717
Bme18I	GGWCC	2 cut(s)	79, 982
BmeT110I	CYCGRG	1 cut(s)	229
BmgT120I	GGNCC	3 cut(s)	79, 982, 1046
BmiI	GGNNCC	1 cut(s)	1047
BmrFI	CCNGG	4 cut(s)	77, 161, 191, 717
BpiI	GAAGAC	1 cut(s)	603
BpmI	CTGGAG	2 cut(s)	158, 448
Bpu10I	CCTNAGC	1 cut(s)	24
Bpu1102I	GCTNAGC	2 cut(s)	185, 848
Bpu14I	TTCGAA	1 cut(s)	359
BpuMI	CCSGG	2 cut(s)	77, 161
BsaAI	YACGTR	1 cut(s)	375
BsaBI	GATNNNNATC	1 cut(s)	1020
BsaI	GGTCTC	2 cut(s)	825, 916
BsaJI	CCNNGG	5 cut(s)	48, 271, 583, 691, 715
BsaXI	ACNNNNNCTCC	2 cut(s)	236, 266
Bsc4I	CCNNNNNNNGG	2 cut(s)	49, 841
Bse1I	ACTGG	3 cut(s)	43, 431, 800
Bse3DI	GCAATG	1 cut(s)	859
Bse8I	GATNNNNATC	1 cut(s)	1020
BseBI	CCWGG	2 cut(s)	191, 717
BseDI	CCNNGG	5 cut(s)	48, 271, 583, 691, 715
BseGI	GGATG	3 cut(s)	72, 156, 346
BseJI	GATNNNNATC	1 cut(s)	1020
BseLI	CCNNNNNNNGG	2 cut(s)	49, 841
BseMI	GCAATG	1 cut(s)	859
BseMII	CTCAG	5 cut(s)	15, 199, 481, 714, 839
BseNI	ACTGG	3 cut(s)	43, 431, 800
BseRI	GAGGAG	3 cut(s)	209, 299, 636
BseXI	GCAGC	2 cut(s)	204, 318
BseYI	CCCAGC	3 cut(s)	397, 675, 755
Bsh1236I	CGCG	2 cut(s)	207, 318
BshFI	GGCC	5 cut(s)	22, 487, 696, 920, 1048
BsiHKAI	GWGCWC	1 cut(s)	879
BsiHKCI	CYCGRG	1 cut(s)	229
BsiSI	CCGG	2 cut(s)	77, 161
BsiWI	CGTACG	1 cut(s)	375
BslFI	GGGAC	1 cut(s)	320
BslI	CCNNNNNNNGG	2 cut(s)	49, 841
BsmAI	GTCTC	2 cut(s)	825, 916
BsmFI	GGGAC	1 cut(s)	320
BsnI	GGCC	5 cut(s)	22, 487, 696, 920, 1048
Bso31I	GGTCTC	2 cut(s)	825, 916
BsoBI	CYCGRG	1 cut(s)	229
Bsp119I	TTCGAA	1 cut(s)	359
Bsp1286I	GDGCHC	1 cut(s)	879
Bsp143I	GATC	3 cut(s)	225, 951, 1015
Bsp1720I	GCTNAGC	2 cut(s)	185, 848
BspACI	CCGC	4 cut(s)	60, 123, 335, 459
BspANI	GGCC	5 cut(s)	22, 487, 696, 920, 1048
BspCNI	CTCAG	5 cut(s)	16, 198, 480, 713, 840
BspFNI	CGCG	2 cut(s)	207, 318
BspLI	GGNNCC	1 cut(s)	1047
BspMAI	CTGCAG	1 cut(s)	242
BspMI	ACCTGC	3 cut(s)	189, 832, 967
BspPI	GGATC	1 cut(s)	946
BspT104I	TTCGAA	1 cut(s)	359
BspTNI	GGTCTC	2 cut(s)	825, 916
BsrDI	GCAATG	1 cut(s)	859
BsrI	ACTGG	3 cut(s)	43, 431, 800
BssECI	CCNNGG	5 cut(s)	48, 271, 583, 691, 715
BssMI	GATC	3 cut(s)	225, 951, 1015
BssT1I	CCWWGG	3 cut(s)	48, 583, 691
Bst2UI	CCWGG	2 cut(s)	191, 717
Bst4CI	ACNGT	4 cut(s)	530, 541, 793, 986
BstBAI	YACGTR	1 cut(s)	375
BstBI	TTCGAA	1 cut(s)	359
BstC8I	GCNNGC	5 cut(s)	11, 203, 238, 459, 489
BstDEI	CTNAG	5 cut(s)	24, 185, 467, 700, 848
BstDSI	CCRYGG	1 cut(s)	271
BstF5I	GGATG	3 cut(s)	72, 156, 346
BstFNI	CGCG	2 cut(s)	207, 318
BstH2I	RGCGCY	1 cut(s)	237
BstHHI	GCGC	4 cut(s)	207, 236, 318, 771
BstKTI	GATC	3 cut(s)	228, 954, 1018
BstMAI	GTCTC	2 cut(s)	825, 916
BstMBI	GATC	3 cut(s)	225, 951, 1015
BstMWI	GCNNNNNNNGC	4 cut(s)	19, 766, 775, 998
BstNI	CCWGG	2 cut(s)	191, 717
BstNSI	RCATGY	1 cut(s)	645
BstSCI	CCNGG	4 cut(s)	75, 159, 189, 715
BstSFI	CTRYAG	1 cut(s)	238
BstSNI	TACGTA	1 cut(s)	375
BstUI	CGCG	2 cut(s)	207, 318
BstV1I	GCAGC	2 cut(s)	204, 318
BstV2I	GAAGAC	1 cut(s)	603
BsuRI	GGCC	5 cut(s)	22, 487, 696, 920, 1048
BtgI	CCRYGG	1 cut(s)	271
BtsCI	GGATG	3 cut(s)	72, 156, 346
BtsIMutI	CAGTG	3 cut(s)	535, 557, 798
BveI	ACCTGC	3 cut(s)	189, 832, 967
Cac8I	GCNNGC	5 cut(s)	11, 203, 238, 459, 489
CaiI	CAGNNNCTG	2 cut(s)	181, 847
CfoI	GCGC	4 cut(s)	207, 236, 318, 771
Cfr13I	GGNCC	3 cut(s)	79, 982, 1046
CseI	GACGC	1 cut(s)	223
Csp6I	GTAC	3 cut(s)	372, 376, 385
CviAII	CATG	4 cut(s)	312, 504, 642, 1006
CviQI	GTAC	3 cut(s)	372, 376, 385
DdeI	CTNAG	5 cut(s)	24, 185, 467, 700, 848
DpnI	GATC	3 cut(s)	227, 953, 1017
DpnII	GATC	3 cut(s)	225, 951, 1015
DraIII	CACNNNGTG	2 cut(s)	277, 883
Eco105I	TACGTA	1 cut(s)	375
Eco130I	CCWWGG	3 cut(s)	48, 583, 691
Eco31I	GGTCTC	2 cut(s)	825, 916
Eco47I	GGWCC	2 cut(s)	79, 982
Eco57I	CTGAAG	1 cut(s)	162
Eco88I	CYCGRG	1 cut(s)	229
EcoO109I	RGGNCCY	1 cut(s)	1046
EcoRII	CCWGG	2 cut(s)	189, 715
EcoT14I	CCWWGG	3 cut(s)	48, 583, 691
ErhI	CCWWGG	3 cut(s)	48, 583, 691
FaeI	CATG	4 cut(s)	315, 507, 645, 1009
FalI	AAGNNNNNCTT	2 cut(s)	588, 620
FaqI	GGGAC	1 cut(s)	320
FatI	CATG	4 cut(s)	311, 503, 641, 1005
FauI	CCCGC	2 cut(s)	130, 466
FbaI	TGATCA	1 cut(s)	1015
Fnu4HI	GCNGC	4 cut(s)	61, 218, 332, 335
FokI	GGATG	3 cut(s)	59, 143, 353
Fsp4HI	GCNGC	4 cut(s)	61, 218, 332, 335
FspBI	CTAG	1 cut(s)	590
FspI	TGCGCA	1 cut(s)	770
GlaI	GCGC	4 cut(s)	206, 235, 317, 770
GluI	GCNGC	4 cut(s)	61, 218, 332, 335
GsaI	CCCAGC	3 cut(s)	401, 679, 759
GsuI	CTGGAG	2 cut(s)	158, 448
HaeII	RGCGCY	1 cut(s)	237
HaeIII	GGCC	5 cut(s)	22, 487, 696, 920, 1048
HapII	CCGG	2 cut(s)	77, 161
HgaI	GACGC	1 cut(s)	223
HhaI	GCGC	4 cut(s)	207, 236, 318, 771
Hin1II	CATG	4 cut(s)	315, 507, 645, 1009
Hin6I	GCGC	4 cut(s)	205, 234, 316, 769
HinP1I	GCGC	4 cut(s)	205, 234, 316, 769
HincII	GTYRAC	2 cut(s)	154, 655
HindII	GTYRAC	2 cut(s)	154, 655
HindIII	AAGCTT	1 cut(s)	968
HinfI	GANTC	3 cut(s)	39, 391, 1070
HpaII	CCGG	2 cut(s)	77, 161
HphI	GGTGA	2 cut(s)	277, 289
Hpy166II	GTNNAC	4 cut(s)	154, 268, 655, 823
Hpy188I	TCNGA	3 cut(s)	470, 703, 712
Hpy188III	TCNNGA	2 cut(s)	175, 229
Hpy8I	GTNNAC	4 cut(s)	154, 268, 655, 823
Hpy99I	CGWCG	1 cut(s)	217
HpyAV	CCTTC	5 cut(s)	374, 403, 740, 823, 1036
HpyCH4III	ACNGT	4 cut(s)	530, 541, 793, 986
HpyCH4IV	ACGT	1 cut(s)	374
HpyCH4V	TGCA	7 cut(s)	13, 132, 240, 507, 841, 857, 1001
HpyF10VI	GCNNNNNNNGC	4 cut(s)	19, 766, 775, 998
HpyF3I	CTNAG	5 cut(s)	24, 185, 467, 700, 848
HpySE526I	ACGT	1 cut(s)	374
Hsp92II	CATG	4 cut(s)	315, 507, 645, 1009
HspAI	GCGC	4 cut(s)	205, 234, 316, 769
Ksp22I	TGATCA	1 cut(s)	1015
Kzo9I	GATC	3 cut(s)	225, 951, 1015
LmnI	GCTCC	4 cut(s)	286, 429, 573, 874
Lsp1109I	GCAGC	2 cut(s)	204, 318
MaeI	CTAG	1 cut(s)	590
MaeII	ACGT	1 cut(s)	374
MaeIII	GTNAC	3 cut(s)	573, 787, 973
MalI	GATC	3 cut(s)	227, 953, 1017
MboI	GATC	3 cut(s)	225, 951, 1015
MboII	GAAGA	5 cut(s)	110, 492, 533, 608, 638
MhlI	GDGCHC	1 cut(s)	879
MluCI	AATT	4 cut(s)	4, 781, 858, 892
MlyI	GAGTC	2 cut(s)	48, 400
MmeI	TCCRAC	1 cut(s)	979
MseI	TTAA	1 cut(s)	1076
MslI	CAYNNNNRTG	1 cut(s)	502
MspA1I	CMGCKG	1 cut(s)	337
MspI	CCGG	2 cut(s)	77, 161
MspR9I	CCNGG	4 cut(s)	77, 161, 191, 717
MvaI	CCWGG	2 cut(s)	191, 717
MvnI	CGCG	2 cut(s)	207, 318
MwoI	GCNNNNNNNGC	4 cut(s)	19, 766, 775, 998
NciI	CCSGG	2 cut(s)	77, 161
NdeII	GATC	3 cut(s)	225, 951, 1015
NlaIII	CATG	4 cut(s)	315, 507, 645, 1009
NlaIV	GGNNCC	1 cut(s)	1047
NmeAIII	GCCGAG	1 cut(s)	393
NmuCI	GTSAC	2 cut(s)	573, 973
NsbI	TGCGCA	1 cut(s)	770
NspI	RCATGY	1 cut(s)	645
NspV	TTCGAA	1 cut(s)	359
PaeR7I	CTCGAG	1 cut(s)	229
PaqCI	CACCTGC	1 cut(s)	832
PcsI	WCGNNNNNNNCGW	3 cut(s)	221, 279, 365
PfeI	GAWTC	1 cut(s)	1070
Pfl23II	CGTACG	1 cut(s)	375
PflFI	GACNNNGTC	1 cut(s)	908
PflMI	CCANNNNNTGG	1 cut(s)	49
PfoI	TCCNGGA	1 cut(s)	75
PkrI	GCNGC	4 cut(s)	62, 219, 333, 336
PleI	GAGTC	2 cut(s)	47, 399
PpsI	GAGTC	2 cut(s)	47, 399
Ppu21I	YACGTR	1 cut(s)	375
PsiI	TTATAA	1 cut(s)	930
Psp6I	CCWGG	2 cut(s)	189, 715
PspFI	CCCAGC	3 cut(s)	397, 675, 755
PspGI	CCWGG	2 cut(s)	189, 715
PspLI	CGTACG	1 cut(s)	375
PspN4I	GGNNCC	1 cut(s)	1047
PspPI	GGNCC	3 cut(s)	79, 982, 1046
PstI	CTGCAG	1 cut(s)	242
PstNI	CAGNNNCTG	2 cut(s)	181, 847
PsyI	GACNNNGTC	1 cut(s)	908
RsaI	GTAC	3 cut(s)	373, 377, 386
RsaNI	GTAC	3 cut(s)	372, 376, 385
RseI	CAYNNNNRTG	1 cut(s)	502
SaqAI	TTAA	1 cut(s)	1076
SatI	GCNGC	4 cut(s)	61, 218, 332, 335
Sau3AI	GATC	3 cut(s)	225, 951, 1015
Sau96I	GGNCC	3 cut(s)	79, 982, 1046
SbfI	CCTGCAGG	1 cut(s)	242
SchI	GAGTC	2 cut(s)	48, 400
ScrFI	CCNGG	4 cut(s)	77, 161, 191, 717
SdaI	CCTGCAGG	1 cut(s)	242
SduI	GDGCHC	1 cut(s)	879
SfcI	CTRYAG	1 cut(s)	238
Sfr274I	CTCGAG	1 cut(s)	229
SfuI	TTCGAA	1 cut(s)	359
SinI	GGWCC	2 cut(s)	79, 982
SlaI	CTCGAG	1 cut(s)	229
SmiMI	CAYNNNNRTG	1 cut(s)	502
SmlI	CTYRAG	1 cut(s)	229
SmoI	CTYRAG	1 cut(s)	229
SnaBI	TACGTA	1 cut(s)	375
Sse8387I	CCTGCAGG	1 cut(s)	242
Sse9I	AATT	4 cut(s)	4, 781, 858, 892
SsiI	CCGC	4 cut(s)	60, 123, 335, 459
SspMI	CTAG	1 cut(s)	590
StyD4I	CCNGG	4 cut(s)	75, 159, 189, 715
StyI	CCWWGG	3 cut(s)	48, 583, 691
TaaI	ACNGT	4 cut(s)	530, 541, 793, 986
TaiI	ACGT	1 cut(s)	377
TaqI	TCGA	5 cut(s)	37, 224, 230, 359, 1024
TasI	AATT	4 cut(s)	4, 781, 858, 892
TauI	GCSGC	2 cut(s)	63, 337
TfiI	GAWTC	1 cut(s)	1070
Tru1I	TTAA	1 cut(s)	1076
Tru9I	TTAA	1 cut(s)	1076
TscAI	CASTG	3 cut(s)	535, 564, 798
TseFI	GTSAC	2 cut(s)	573, 973
TseI	GCWGC	2 cut(s)	217, 331
Tsp45I	GTSAC	2 cut(s)	573, 973
TspDTI	ATGAA	7 cut(s)	17, 308, 492, 578, 759, 805, 1021
TspRI	CASTG	3 cut(s)	535, 564, 798
Tth111I	GACNNNGTC	1 cut(s)	908
Van91I	CCANNNNNTGG	1 cut(s)	49
VpaK11BI	GGWCC	2 cut(s)	79, 982
XapI	RAATTY	1 cut(s)	892
XceI	RCATGY	1 cut(s)	645
XhoI	CTCGAG	1 cut(s)	229
XspI	CTAG	1 cut(s)	590

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.