Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0015650

Physical Location & Seq

Genomic Coordinates Reverse (-)

16799039 .. 16800864

Gene Structure 1826 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g13930.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGCCTCCTCAGATCAGAAACCACAACAGATGGCCAGCTCTCCCAACTTCATGCAGGAAATTGATTGAAGAATACAGCGAAGAAACAATTAAACTGTGTGGGATTCTGATGAAGGTGTTGTCTCTAAACCTTGGCCTTGGGGAAGACCAACTTCTCGATGCTTTCGGAGGAGAAGAGAATGTTGGGGCATGTTTACGGGTCAATTTCTACCCAAAATGCCCTCAACCAGATCTAACCCTTGGTCTCTCAGAACACTCTGACCCAGGAGGCCTGACCCTTCTCTTACCTGATGAAAATGTTGCTGGACTTCAAGTTCGTAAAGGTGAAAATTGGGTGACTGTGAAGCCTGTTCCTAATGCCTTCATCGTGAACATCGGAGATCGATCTCAGGTGCTGAGCAATGCAATTTACAAAAGTGTAGAACATAGAGTGATTGTGAATTCAGTTGAAGACAGAGTTTCACTGGCCTTGTTTTACAACCCAAAAAGTGATTTGATGATTGAACCTGCCAAAGCTCTTGTCACAAATGATCGCCCTGCCCTTTACTCGCCTATGACATTTGATGAGTATCGGCTTTATATTAGGATGAAGGGGCCTTGTGGAAAGGCGCAAGTTGAATCTTTAAAGTCCTATGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0009966 GO:0010646 GO:0016787 GO:0016810 GO:0023051 GO:0044424 GO:0044444 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0065007 GO:0120091 GO:2000022

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

213

Amino Acids

23.67

Weight (kDa)

5.72

Isoelectric Point (pI)

47.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015650)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g11360
malus_domestica	MD04G1154400.v1.1 MD12G1168100.v1.1
prunus_persica	Prupe.6G278400_v2.0.a1
pyrus_communis	pycom04g13930 pycom12g15960
rosa_chinensis	RchiOBHm_Chr3g0462961
rosa_laevigata	RLG00000024821
rosa_multiflora	Rmu_sc0000766.1_g000023
rosa_roxburghii	Rroxscaffold_6G00417080
rosa_rugosa	Rorug03G0060300
rosa_samantha	Rh3AG118500 Rh3BG123500 Rh3CG125200 Rh3DG124200
rosa_wichuraiana	Rw3G010050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	514
AcoI	YGGCCR	1 cut(s)	32
AcsI	RAATTY	1 cut(s)	439
AgsI	TTSAA	5 cut(s)	68, 311, 449, 503, 617
AjnI	CCWGG	1 cut(s)	262
AjuI	GAANNNNNNNTTGG	2 cut(s)	165, 197
AloI	GAACNNNNNNTCC	2 cut(s)	297, 329
AluBI	AGCT	2 cut(s)	38, 515
AluI	AGCT	2 cut(s)	38, 515
Alw26I	GTCTC	2 cut(s)	126, 248
AlwNI	CAGNNNCTG	1 cut(s)	394
AoxI	GGCC	5 cut(s)	32, 133, 268, 465, 593
ApoI	RAATTY	1 cut(s)	439
ArsI	GACNNNNNNTTYG	4 cut(s)	297, 329, 504, 536
AspLEI	GCGC	1 cut(s)	610
AspS9I	GGNCC	1 cut(s)	593
AsuHPI	GGTGA	2 cut(s)	335, 346
BalI	TGGCCA	1 cut(s)	34
BbsI	GAAGAC	2 cut(s)	150, 456
BccI	CCATC	1 cut(s)	24
BciT130I	CCWGG	1 cut(s)	264
BcoDI	GTCTC	2 cut(s)	126, 248
BfuAI	ACCTGC	1 cut(s)	514
BglII	AGATCT	1 cut(s)	229
BlpI	GCTNAGC	1 cut(s)	395
Bme1390I	CCNGG	1 cut(s)	264
BmgT120I	GGNCC	1 cut(s)	593
BmiI	GGNNCC	1 cut(s)	594
BmrFI	CCNGG	1 cut(s)	264
BmsI	GCATC	1 cut(s)	148
BpiI	GAAGAC	2 cut(s)	150, 456
Bpu1102I	GCTNAGC	1 cut(s)	395
Bsa29I	ATCGAT	1 cut(s)	382
BsaBI	GATNNNNATC	1 cut(s)	567
BsaI	GGTCTC	1 cut(s)	248
BsaJI	CCNNGG	4 cut(s)	130, 136, 238, 262
Bse1I	ACTGG	1 cut(s)	468
Bse3DI	GCAATG	1 cut(s)	406
Bse8I	GATNNNNATC	1 cut(s)	567
BseBI	CCWGG	1 cut(s)	264
BseCI	ATCGAT	1 cut(s)	382
BseDI	CCNNGG	4 cut(s)	130, 136, 238, 262
BseGI	GGATG	1 cut(s)	591
BseJI	GATNNNNATC	1 cut(s)	567
BseMI	GCAATG	1 cut(s)	406
BseMII	CTCAG	4 cut(s)	23, 261, 386, 401
BseNI	ACTGG	1 cut(s)	468
BseRI	GAGGAG	1 cut(s)	183
BshFI	GGCC	5 cut(s)	34, 135, 270, 467, 595
BshVI	ATCGAT	1 cut(s)	382
BsmAI	GTCTC	2 cut(s)	126, 248
BsnI	GGCC	5 cut(s)	34, 135, 270, 467, 595
Bso31I	GGTCTC	1 cut(s)	248
Bsp143I	GATC	5 cut(s)	12, 229, 379, 383, 529
Bsp1720I	GCTNAGC	1 cut(s)	395
BspANI	GGCC	5 cut(s)	34, 135, 270, 467, 595
BspCNI	CTCAG	4 cut(s)	22, 260, 387, 400
BspDI	ATCGAT	1 cut(s)	382
BspLI	GGNNCC	1 cut(s)	594
BspMI	ACCTGC	1 cut(s)	514
BspTNI	GGTCTC	1 cut(s)	248
BsrDI	GCAATG	1 cut(s)	406
BsrI	ACTGG	1 cut(s)	468
BssECI	CCNNGG	4 cut(s)	130, 136, 238, 262
BssMI	GATC	5 cut(s)	12, 229, 379, 383, 529
BssT1I	CCWWGG	3 cut(s)	130, 136, 238
Bst2UI	CCWGG	1 cut(s)	264
Bst4CI	ACNGT	2 cut(s)	96, 340
Bst6I	CTCTTC	1 cut(s)	168
BstC8I	GCNNGC	1 cut(s)	36
BstDEI	CTNAG	4 cut(s)	9, 247, 387, 395
BstF5I	GGATG	1 cut(s)	591
BstHHI	GCGC	1 cut(s)	610
BstKTI	GATC	5 cut(s)	15, 232, 382, 386, 532
BstMAI	GTCTC	2 cut(s)	126, 248
BstMBI	GATC	5 cut(s)	12, 229, 379, 383, 529
BstNI	CCWGG	1 cut(s)	264
BstNSI	RCATGY	1 cut(s)	192
BstSCI	CCNGG	1 cut(s)	262
BstV2I	GAAGAC	2 cut(s)	150, 456
BstX2I	RGATCY	1 cut(s)	229
BstYI	RGATCY	1 cut(s)	229
Bsu15I	ATCGAT	1 cut(s)	382
BsuRI	GGCC	5 cut(s)	34, 135, 270, 467, 595
BsuTUI	ATCGAT	1 cut(s)	382
BtsCI	GGATG	1 cut(s)	591
BtsIMutI	CAGTG	1 cut(s)	461
BveI	ACCTGC	1 cut(s)	514
Cac8I	GCNNGC	1 cut(s)	36
CaiI	CAGNNNCTG	1 cut(s)	394
CfoI	GCGC	1 cut(s)	610
Cfr13I	GGNCC	1 cut(s)	593
ClaI	ATCGAT	1 cut(s)	382
CviAII	CATG	2 cut(s)	51, 189
CviJI	RGCY	9 cut(s)	34, 38, 135, 270, 346, 467, 515, 574, 595
CviKI_1	RGCY	9 cut(s)	34, 38, 135, 270, 346, 467, 515, 574, 595
DdeI	CTNAG	4 cut(s)	9, 247, 387, 395
DpnI	GATC	5 cut(s)	14, 231, 381, 385, 531
DpnII	GATC	5 cut(s)	12, 229, 379, 383, 529
DraI	TTTAAA	1 cut(s)	624
EaeI	YGGCCR	1 cut(s)	32
Eam1104I	CTCTTC	1 cut(s)	168
EarI	CTCTTC	1 cut(s)	168
Eco130I	CCWWGG	3 cut(s)	130, 136, 238
Eco147I	AGGCCT	1 cut(s)	270
Eco31I	GGTCTC	1 cut(s)	248
EcoO109I	RGGNCCY	1 cut(s)	593
EcoRI	GAATTC	1 cut(s)	439
EcoRII	CCWGG	1 cut(s)	262
EcoT14I	CCWWGG	3 cut(s)	130, 136, 238
ErhI	CCWWGG	3 cut(s)	130, 136, 238
FaeI	CATG	2 cut(s)	54, 192
FaiI	YATR	6 cut(s)	52, 190, 426, 554, 579, 633
FalI	AAGNNNNNCTT	2 cut(s)	135, 167
FatI	CATG	2 cut(s)	50, 188
FokI	GGATG	1 cut(s)	598
GlaI	GCGC	1 cut(s)	609
HaeIII	GGCC	5 cut(s)	34, 135, 270, 467, 595
HhaI	GCGC	1 cut(s)	610
Hin1II	CATG	2 cut(s)	54, 192
Hin6I	GCGC	1 cut(s)	608
HinP1I	GCGC	1 cut(s)	608
HinfI	GANTC	2 cut(s)	103, 617
HphI	GGTGA	2 cut(s)	335, 346
Hpy166II	GTNNAC	2 cut(s)	194, 370
Hpy188I	TCNGA	7 cut(s)	12, 17, 108, 167, 250, 259, 377
Hpy188III	TCNNGA	2 cut(s)	155, 367
Hpy8I	GTNNAC	2 cut(s)	194, 370
HpyAV	CCTTC	4 cut(s)	106, 287, 370, 583
HpyCH4III	ACNGT	2 cut(s)	96, 340
HpyCH4V	TGCA	2 cut(s)	54, 404
HpyF3I	CTNAG	4 cut(s)	9, 247, 387, 395
Hsp92II	CATG	2 cut(s)	54, 192
HspAI	GCGC	1 cut(s)	608
Kzo9I	GATC	5 cut(s)	12, 229, 379, 383, 529
LweI	GCATC	1 cut(s)	148
MaeIII	GTNAC	2 cut(s)	334, 520
MalI	GATC	5 cut(s)	14, 231, 381, 385, 531
MboI	GATC	5 cut(s)	12, 229, 379, 383, 529
MboII	GAAGA	5 cut(s)	80, 92, 155, 185, 461
MflI	RGATCY	1 cut(s)	229
MlsI	TGGCCA	1 cut(s)	34
MluCI	AATT	6 cut(s)	59, 87, 202, 328, 405, 439
MluNI	TGGCCA	1 cut(s)	34
MnlI	CCTC	5 cut(s)	15, 18, 161, 231, 260
Mox20I	TGGCCA	1 cut(s)	34
MscI	TGGCCA	1 cut(s)	34
MseI	TTAA	2 cut(s)	90, 623
Msp20I	TGGCCA	1 cut(s)	34
MspR9I	CCNGG	1 cut(s)	264
MvaI	CCWGG	1 cut(s)	264
NdeII	GATC	5 cut(s)	12, 229, 379, 383, 529
NlaIII	CATG	2 cut(s)	54, 192
NlaIV	GGNNCC	1 cut(s)	594
NmuCI	GTSAC	2 cut(s)	334, 520
NspI	RCATGY	1 cut(s)	192
PceI	AGGCCT	1 cut(s)	270
PfeI	GAWTC	2 cut(s)	103, 617
Psp6I	CCWGG	1 cut(s)	262
PspGI	CCWGG	1 cut(s)	262
PspN4I	GGNNCC	1 cut(s)	594
PspPI	GGNCC	1 cut(s)	593
PstNI	CAGNNNCTG	1 cut(s)	394
PsuI	RGATCY	1 cut(s)	229
SaqAI	TTAA	2 cut(s)	90, 623
Sau3AI	GATC	5 cut(s)	12, 229, 379, 383, 529
Sau96I	GGNCC	1 cut(s)	593
ScrFI	CCNGG	1 cut(s)	264
SetI	ASST	8 cut(s)	40, 117, 132, 289, 325, 393, 508, 517
SfaNI	GCATC	1 cut(s)	148
Sse9I	AATT	6 cut(s)	59, 87, 202, 328, 405, 439
SseBI	AGGCCT	1 cut(s)	270
StuI	AGGCCT	1 cut(s)	270
StyD4I	CCNGG	1 cut(s)	262
StyI	CCWWGG	3 cut(s)	130, 136, 238
TaaI	ACNGT	2 cut(s)	96, 340
TaqI	TCGA	2 cut(s)	156, 382
TasI	AATT	6 cut(s)	59, 87, 202, 328, 405, 439
TfiI	GAWTC	2 cut(s)	103, 617
Tru1I	TTAA	2 cut(s)	90, 623
Tru9I	TTAA	2 cut(s)	90, 623
TscAI	CASTG	1 cut(s)	468
TseFI	GTSAC	2 cut(s)	334, 520
Tsp45I	GTSAC	2 cut(s)	334, 520
TspDTI	ATGAA	5 cut(s)	39, 125, 306, 352, 602
TspRI	CASTG	1 cut(s)	468
XapI	RAATTY	1 cut(s)	439
XceI	RCATGY	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.