Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0018915

Physical Location & Seq

Genomic Coordinates Forward (+)

26944518 .. 26945317

Gene Structure 800 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G292900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGCAAGCTCCCTGGCCTTCAAGCTTGTTCTGGTGGTCCTCGGGTGTACGCTGGTTGGTGCACCCTTAGCCCAAGCTGTCATACCATGCAGCAGGGTGTCACAATACGTGGGACCCTGCATAAGTTACTTGAAGACGGGTGGGGCCGTGCCTGTACCATGCTGTAATGGGATTAGGTCCCTGATCGGCTTGGCTGGGACCACACCTGACCGCCAGGGCGTGTGTAGGTGCTTGGTCGCGACTGCTAAATCAATCACTGGGATCAAGGGTGAACTTGTTAGTGGACTCCCTAGGGCTTGTAATGTCAGGCTTCCTTACCCCATTGGACCCAACGTTGACTGCAACCGGATCCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001101 GO:0003006 GO:0003674 GO:0005215 GO:0005319 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0005911 GO:0006649 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006950 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009505 GO:0009506 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0009628 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009889 GO:0009987 GO:0010026 GO:0010035 GO:0010154 GO:0010556 GO:0010876 GO:0012505 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016049 GO:0019222 GO:0022412 GO:0022414 GO:0030054 GO:0030154 GO:0030312 GO:0031410 GO:0031976 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0033036 GO:0040007 GO:0042221 GO:0042335 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0060255 GO:0060560 GO:0061024 GO:0061458 GO:0065007 GO:0071702 GO:0071840 GO:0071944 GO:0090376 GO:0090378 GO:0090558 GO:0090627 GO:0097708 GO:0098791 GO:1901700 GO:1901957

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tryp_alpha_amyl

Protein Analysis

119

Amino Acids

12.15

Weight (kDa)

9.28

Isoelectric Point (pI)

23.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018915)

Species	Orthologous Gene IDs
prunus_persica	Prupe.6G292900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0460581
rosa_multiflora	Rmu_sc0001256.1_g000004
rosa_roxburghii	Rroxscaffold_6G00419350
rosa_rugosa	Rorug03G0044100
rosa_samantha	Rh3AG102200 Rh3CG107800 Rh3DG107300
rosa_wichuraiana	Rw3G008680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	239
AciI	CCGC	1 cut(s)	211
AclI	AACGTT	1 cut(s)	333
AclWI	GGATC	3 cut(s)	269, 343, 356
AfaI	GTAC	2 cut(s)	49, 156
AgsI	TTSAA	2 cut(s)	22, 133
AjnI	CCWGG	2 cut(s)	12, 213
AluBI	AGCT	3 cut(s)	9, 25, 77
AluI	AGCT	3 cut(s)	9, 25, 77
Alw21I	GWGCWC	1 cut(s)	64
Alw44I	GTGCAC	1 cut(s)	60
AlwI	GGATC	3 cut(s)	269, 343, 356
Ama87I	CYCGRG	1 cut(s)	41
AoxI	GGCC	2 cut(s)	15, 144
ApaLI	GTGCAC	1 cut(s)	60
ApeKI	GCWGC	1 cut(s)	90
AspA2I	CCTAGG	1 cut(s)	290
AspS9I	GGNCC	6 cut(s)	37, 113, 144, 177, 198, 326
AsuHPI	GGTGA	1 cut(s)	281
AvaI	CYCGRG	1 cut(s)	41
AvaII	GGWCC	5 cut(s)	37, 113, 177, 198, 326
AvrII	CCTAGG	1 cut(s)	290
BaeGI	GKGCMC	1 cut(s)	64
BamHI	GGATCC	1 cut(s)	348
BbsI	GAAGAC	1 cut(s)	140
Bbv12I	GWGCWC	1 cut(s)	64
BbvI	GCAGC	1 cut(s)	102
BceAI	ACGGC	1 cut(s)	131
BciT130I	CCWGG	2 cut(s)	14, 215
BfaI	CTAG	1 cut(s)	291
BisI	GCNGC	1 cut(s)	91
BlnI	CCTAGG	1 cut(s)	290
BlsI	GCNGC	1 cut(s)	92
Bme1390I	CCNGG	2 cut(s)	14, 215
Bme18I	GGWCC	5 cut(s)	37, 113, 177, 198, 326
BmeT110I	CYCGRG	1 cut(s)	41
BmgT120I	GGNCC	6 cut(s)	37, 113, 144, 177, 198, 326
BmiI	GGNNCC	7 cut(s)	114, 115, 145, 179, 199, 328, 350
BmrFI	CCNGG	2 cut(s)	14, 215
BmrI	ACTGGG	1 cut(s)	267
BmuI	ACTGGG	1 cut(s)	267
BpiI	GAAGAC	1 cut(s)	140
Bpu10I	CCTNAGC	1 cut(s)	67
BsaAI	YACGTR	1 cut(s)	109
BsaJI	CCNNGG	4 cut(s)	12, 40, 214, 290
BsaWI	WCCGGW	1 cut(s)	345
Bse1I	ACTGG	1 cut(s)	262
BseBI	CCWGG	2 cut(s)	14, 215
BseDI	CCNNGG	4 cut(s)	12, 40, 214, 290
BseNI	ACTGG	1 cut(s)	262
BseSI	GKGCMC	1 cut(s)	64
BseXI	GCAGC	1 cut(s)	102
BseYI	CCCAGC	1 cut(s)	194
Bsh1236I	CGCG	1 cut(s)	239
BshFI	GGCC	2 cut(s)	17, 146
BsiHKAI	GWGCWC	1 cut(s)	64
BsiHKCI	CYCGRG	1 cut(s)	41
BsiSI	CCGG	1 cut(s)	346
BslFI	GGGAC	3 cut(s)	126, 163, 211
BsmFI	GGGAC	3 cut(s)	126, 163, 211
BsnI	GGCC	2 cut(s)	17, 146
BsoBI	CYCGRG	1 cut(s)	41
Bsp1286I	GDGCHC	1 cut(s)	64
Bsp143I	GATC	3 cut(s)	183, 261, 348
Bsp68I	TCGCGA	1 cut(s)	239
BspACI	CCGC	1 cut(s)	211
BspANI	GGCC	2 cut(s)	17, 146
BspFNI	CGCG	1 cut(s)	239
BspLI	GGNNCC	7 cut(s)	114, 115, 145, 179, 199, 328, 350
BspPI	GGATC	3 cut(s)	269, 343, 356
BsrI	ACTGG	1 cut(s)	262
BssECI	CCNNGG	4 cut(s)	12, 40, 214, 290
BssMI	GATC	3 cut(s)	183, 261, 348
BssT1I	CCWWGG	1 cut(s)	290
Bst2UI	CCWGG	2 cut(s)	14, 215
BstBAI	YACGTR	1 cut(s)	109
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	1 cut(s)	67
BstFNI	CGCG	1 cut(s)	239
BstKTI	GATC	3 cut(s)	186, 264, 351
BstMBI	GATC	3 cut(s)	183, 261, 348
BstMWI	GCNNNNNNNGC	1 cut(s)	68
BstNI	CCWGG	2 cut(s)	14, 215
BstSCI	CCNGG	2 cut(s)	12, 213
BstSLI	GKGCMC	1 cut(s)	64
BstUI	CGCG	1 cut(s)	239
BstV1I	GCAGC	1 cut(s)	102
BstV2I	GAAGAC	1 cut(s)	140
BstX2I	RGATCY	1 cut(s)	348
BstYI	RGATCY	1 cut(s)	348
BsuRI	GGCC	2 cut(s)	17, 146
BtsIMutI	CAGTG	2 cut(s)	255, 352
BtuMI	TCGCGA	1 cut(s)	239
Cac8I	GCNNGC	1 cut(s)	7
Cfr13I	GGNCC	6 cut(s)	37, 113, 144, 177, 198, 326
Csp6I	GTAC	2 cut(s)	48, 155
CviAII	CATG	2 cut(s)	87, 159
CviQI	GTAC	2 cut(s)	48, 155
DdeI	CTNAG	1 cut(s)	67
DpnI	GATC	3 cut(s)	185, 263, 350
DpnII	GATC	3 cut(s)	183, 261, 348
Eco130I	CCWWGG	1 cut(s)	290
Eco47I	GGWCC	5 cut(s)	37, 113, 177, 198, 326
Eco88I	CYCGRG	1 cut(s)	41
EcoO109I	RGGNCCY	2 cut(s)	113, 177
EcoRII	CCWGG	2 cut(s)	12, 213
EcoT14I	CCWWGG	1 cut(s)	290
ErhI	CCWWGG	1 cut(s)	290
FaeI	CATG	2 cut(s)	90, 162
FaiI	YATR	4 cut(s)	83, 88, 122, 160
FaqI	GGGAC	3 cut(s)	126, 163, 211
FatI	CATG	2 cut(s)	86, 158
Fnu4HI	GCNGC	1 cut(s)	91
Fsp4HI	GCNGC	1 cut(s)	91
FspBI	CTAG	1 cut(s)	291
GluI	GCNGC	1 cut(s)	91
GsaI	CCCAGC	1 cut(s)	198
HaeIII	GGCC	2 cut(s)	17, 146
HapII	CCGG	1 cut(s)	346
Hin1II	CATG	2 cut(s)	90, 162
HincII	GTYRAC	1 cut(s)	337
HindII	GTYRAC	1 cut(s)	337
HindIII	AAGCTT	1 cut(s)	23
HinfI	GANTC	1 cut(s)	285
HpaII	CCGG	1 cut(s)	346
HphI	GGTGA	1 cut(s)	281
Hpy166II	GTNNAC	5 cut(s)	48, 62, 272, 284, 337
Hpy188III	TCNNGA	1 cut(s)	238
Hpy8I	GTNNAC	5 cut(s)	48, 62, 272, 284, 337
HpyAV	CCTTC	1 cut(s)	28
HpyCH4IV	ACGT	2 cut(s)	108, 333
HpyCH4V	TGCA	4 cut(s)	62, 90, 120, 342
HpyF10VI	GCNNNNNNNGC	1 cut(s)	68
HpyF3I	CTNAG	1 cut(s)	67
HpySE526I	ACGT	2 cut(s)	108, 333
Hsp92II	CATG	2 cut(s)	90, 162
KflI	GGGWCCC	1 cut(s)	113
Kzo9I	GATC	3 cut(s)	183, 261, 348
LmnI	GCTCC	1 cut(s)	14
Lsp1109I	GCAGC	1 cut(s)	102
MaeI	CTAG	1 cut(s)	291
MaeII	ACGT	2 cut(s)	108, 333
MaeIII	GTNAC	2 cut(s)	99, 125
MalI	GATC	3 cut(s)	185, 263, 350
MboI	GATC	3 cut(s)	183, 261, 348
MboII	GAAGA	1 cut(s)	145
MflI	RGATCY	1 cut(s)	348
MhlI	GDGCHC	1 cut(s)	64
MlyI	GAGTC	1 cut(s)	279
MnlI	CCTC	1 cut(s)	50
MspI	CCGG	1 cut(s)	346
MspR9I	CCNGG	2 cut(s)	14, 215
MvaI	CCWGG	2 cut(s)	14, 215
MvnI	CGCG	1 cut(s)	239
MwoI	GCNNNNNNNGC	1 cut(s)	68
NdeII	GATC	3 cut(s)	183, 261, 348
NlaIII	CATG	2 cut(s)	90, 162
NlaIV	GGNNCC	7 cut(s)	114, 115, 145, 179, 199, 328, 350
NmuCI	GTSAC	1 cut(s)	99
NruI	TCGCGA	1 cut(s)	239
PkrI	GCNGC	1 cut(s)	92
PleI	GAGTC	1 cut(s)	279
PpsI	GAGTC	1 cut(s)	279
Ppu21I	YACGTR	1 cut(s)	109
PpuMI	RGGWCCY	2 cut(s)	113, 177
Psp1406I	AACGTT	1 cut(s)	333
Psp5II	RGGWCCY	2 cut(s)	113, 177
Psp6I	CCWGG	2 cut(s)	12, 213
PspFI	CCCAGC	1 cut(s)	194
PspGI	CCWGG	2 cut(s)	12, 213
PspN4I	GGNNCC	7 cut(s)	114, 115, 145, 179, 199, 328, 350
PspPI	GGNCC	6 cut(s)	37, 113, 144, 177, 198, 326
PspPPI	RGGWCCY	2 cut(s)	113, 177
PsuI	RGATCY	1 cut(s)	348
RruI	TCGCGA	1 cut(s)	239
RsaI	GTAC	2 cut(s)	49, 156
RsaNI	GTAC	2 cut(s)	48, 155
SatI	GCNGC	1 cut(s)	91
Sau3AI	GATC	3 cut(s)	183, 261, 348
Sau96I	GGNCC	6 cut(s)	37, 113, 144, 177, 198, 326
SchI	GAGTC	1 cut(s)	279
ScrFI	CCNGG	2 cut(s)	14, 215
SduI	GDGCHC	1 cut(s)	64
SetI	ASST	8 cut(s)	11, 27, 79, 111, 179, 208, 230, 336
SinI	GGWCC	5 cut(s)	37, 113, 177, 198, 326
SsiI	CCGC	1 cut(s)	211
SspMI	CTAG	1 cut(s)	291
StyD4I	CCNGG	2 cut(s)	12, 213
StyI	CCWWGG	1 cut(s)	290
TaiI	ACGT	2 cut(s)	111, 336
TscAI	CASTG	1 cut(s)	262
TseFI	GTSAC	1 cut(s)	99
TseI	GCWGC	1 cut(s)	90
Tsp45I	GTSAC	1 cut(s)	99
TspRI	CASTG	1 cut(s)	262
VneI	GTGCAC	1 cut(s)	60
VpaK11BI	GGWCC	5 cut(s)	37, 113, 177, 198, 326
XmaJI	CCTAGG	1 cut(s)	290
XspI	CTAG	1 cut(s)	291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.