Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0018915

Physical Location & Seq

Genomic Coordinates Reverse (-)

8036665 .. 8038043

Gene Structure 1379 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G008680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGACAAGTTCTATAGCCTCTAGGTTGGCTTTCGTGGTCCTCGTGTGCCCGGTGGTTGGTGCACCGTTAGCGTCCCACGCCGTCACATGTGGCCAGGTGTCAGAAAGCGTGAGACCATGCATAATTTACCTGAGGAATGGTGGGACCGTCCCTGCATCATGTTGCAATGGAGTCCGGTTCCTTAGCAACTCGGCTAAGACCACCATCGACCGCCAGTCCGTTTGCAGGTGCTTGGTTGCAGCTGCTCGAAGCAATTGTGGACTCAAGCTTAACCTCGTGGCTGGTCTTCCAATCAGATGTGGTGTTAGGCTTCCTTACACGATTAGTCAGGACACCAATTGTGACGAGGTCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001101 GO:0003006 GO:0003674 GO:0005215 GO:0005319 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0005911 GO:0006649 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006950 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009505 GO:0009506 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0009628 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009889 GO:0009987 GO:0010026 GO:0010035 GO:0010154 GO:0010556 GO:0010876 GO:0012505 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016049 GO:0019222 GO:0022412 GO:0022414 GO:0030054 GO:0030154 GO:0030312 GO:0031410 GO:0031976 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0033036 GO:0040007 GO:0042221 GO:0042335 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0060255 GO:0060560 GO:0061024 GO:0061458 GO:0065007 GO:0071702 GO:0071840 GO:0071944 GO:0090376 GO:0090378 GO:0090558 GO:0090627 GO:0097708 GO:0098791 GO:1901700 GO:1901957

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tryp_alpha_amyl

Protein Analysis

118

Amino Acids

12.39

Weight (kDa)

8.94

Isoelectric Point (pI)

38.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tryp_alpha_amyl	PF00234	30 - 114	1.9e-10	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018915)

Species	Orthologous Gene IDs
prunus_persica	Prupe.6G292900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0460581
rosa_multiflora	Rmu_sc0001256.1_g000004
rosa_roxburghii	Rroxscaffold_6G00419350
rosa_rugosa	Rorug03G0044100
rosa_samantha	Rh3AG102200 Rh3CG107800 Rh3DG107300
rosa_wichuraiana	Rw3G008680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	216
Acc36I	ACCTGC	1 cut(s)	216
AciI	CCGC	1 cut(s)	211
AcoI	YGGCCR	1 cut(s)	91
AfiI	CCNNNNNNNGG	2 cut(s)	56, 225
AflIII	ACRYGT	1 cut(s)	86
AhdI	GACNNNNNGTC	1 cut(s)	214
AjnI	CCWGG	1 cut(s)	93
AluBI	AGCT	2 cut(s)	242, 268
AluI	AGCT	2 cut(s)	242, 268
Alw21I	GWGCWC	1 cut(s)	64
Alw26I	GTCTC	1 cut(s)	106
Alw44I	GTGCAC	1 cut(s)	60
AoxI	GGCC	1 cut(s)	91
ApaLI	GTGCAC	1 cut(s)	60
ApeKI	GCWGC	2 cut(s)	239, 242
AspS9I	GGNCC	3 cut(s)	37, 144, 349
AsuC2I	CCSGG	1 cut(s)	50
AvaII	GGWCC	3 cut(s)	37, 144, 349
AxyI	CCTNAGG	1 cut(s)	131
BaeGI	GKGCMC	2 cut(s)	50, 64
BalI	TGGCCA	1 cut(s)	93
BauI	CACGAG	2 cut(s)	41, 275
BbsI	GAAGAC	1 cut(s)	278
Bbv12I	GWGCWC	1 cut(s)	64
BbvI	GCAGC	2 cut(s)	229, 251
BccI	CCATC	1 cut(s)	212
BceAI	ACGGC	1 cut(s)	65
BciT130I	CCWGG	1 cut(s)	95
BcnI	CCSGG	1 cut(s)	50
BcoDI	GTCTC	1 cut(s)	106
BfaI	CTAG	1 cut(s)	21
BfmI	CTRYAG	1 cut(s)	12
BfuAI	ACCTGC	1 cut(s)	216
BisI	GCNGC	2 cut(s)	240, 243
BlsI	GCNGC	2 cut(s)	241, 244
Bme1390I	CCNGG	2 cut(s)	50, 95
Bme18I	GGWCC	3 cut(s)	37, 144, 349
BmeRI	GACNNNNNGTC	1 cut(s)	214
BmgT120I	GGNCC	3 cut(s)	37, 144, 349
BmiI	GGNNCC	2 cut(s)	145, 179
BmrFI	CCNGG	2 cut(s)	50, 95
BmsI	GCATC	1 cut(s)	164
BpiI	GAAGAC	1 cut(s)	278
Bpu10I	CCTNAGC	1 cut(s)	182
BpuEI	CTTGAG	1 cut(s)	248
BpuMI	CCSGG	1 cut(s)	50
BsaI	GGTCTC	1 cut(s)	106
BsaWI	WCCGGW	1 cut(s)	174
Bsc4I	CCNNNNNNNGG	2 cut(s)	56, 225
Bse1I	ACTGG	1 cut(s)	214
Bse21I	CCTNAGG	1 cut(s)	131
Bse3DI	GCAATG	1 cut(s)	172
BseBI	CCWGG	1 cut(s)	95
BseLI	CCNNNNNNNGG	2 cut(s)	56, 225
BseMI	GCAATG	1 cut(s)	172
BseMII	CTCAG	1 cut(s)	122
BseNI	ACTGG	1 cut(s)	214
BseSI	GKGCMC	2 cut(s)	50, 64
BseXI	GCAGC	2 cut(s)	229, 251
Bsh1285I	CGRYCG	1 cut(s)	211
BshFI	GGCC	1 cut(s)	93
BsiEI	CGRYCG	1 cut(s)	211
BsiHKAI	GWGCWC	1 cut(s)	64
BsiSI	CCGG	2 cut(s)	50, 175
BslFI	GGGAC	3 cut(s)	58, 134, 157
BslI	CCNNNNNNNGG	2 cut(s)	56, 225
BsmAI	GTCTC	1 cut(s)	106
BsmFI	GGGAC	3 cut(s)	58, 134, 157
BsnI	GGCC	1 cut(s)	93
Bso31I	GGTCTC	1 cut(s)	106
Bsp1286I	GDGCHC	2 cut(s)	50, 64
BspACI	CCGC	1 cut(s)	211
BspANI	GGCC	1 cut(s)	93
BspCNI	CTCAG	1 cut(s)	123
BspLI	GGNNCC	2 cut(s)	145, 179
BspMI	ACCTGC	1 cut(s)	216
BspTNI	GGTCTC	1 cut(s)	106
BsrDI	GCAATG	1 cut(s)	172
BsrI	ACTGG	1 cut(s)	214
BssSI	CACGAG	2 cut(s)	41, 275
Bst2BI	CACGAG	2 cut(s)	41, 275
Bst2UI	CCWGG	1 cut(s)	95
Bst4CI	ACNGT	2 cut(s)	66, 148
BstDEI	CTNAG	3 cut(s)	131, 182, 195
BstMAI	GTCTC	1 cut(s)	106
BstMCI	CGRYCG	1 cut(s)	211
BstMWI	GCNNNNNNNGC	2 cut(s)	68, 77
BstNI	CCWGG	1 cut(s)	95
BstNSI	RCATGY	1 cut(s)	90
BstSCI	CCNGG	2 cut(s)	48, 93
BstSFI	CTRYAG	1 cut(s)	12
BstSLI	GKGCMC	2 cut(s)	50, 64
BstV1I	GCAGC	2 cut(s)	229, 251
BstV2I	GAAGAC	1 cut(s)	278
Bsu36I	CCTNAGG	1 cut(s)	131
BsuRI	GGCC	1 cut(s)	93
BveI	ACCTGC	1 cut(s)	216
Cfr13I	GGNCC	3 cut(s)	37, 144, 349
CseI	GACGC	1 cut(s)	60
CviAII	CATG	3 cut(s)	87, 117, 159
CviJI	RGCY	8 cut(s)	17, 29, 93, 194, 242, 268, 281, 310
CviKI_1	RGCY	8 cut(s)	17, 29, 93, 194, 242, 268, 281, 310
DdeI	CTNAG	3 cut(s)	131, 182, 195
DriI	GACNNNNNGTC	1 cut(s)	214
EaeI	YGGCCR	1 cut(s)	91
Eam1105I	GACNNNNNGTC	1 cut(s)	214
Eco31I	GGTCTC	1 cut(s)	106
Eco47I	GGWCC	3 cut(s)	37, 144, 349
Eco81I	CCTNAGG	1 cut(s)	131
EcoRII	CCWGG	1 cut(s)	93
EcoT22I	ATGCAT	1 cut(s)	122
FaeI	CATG	3 cut(s)	90, 120, 162
FaiI	YATR	5 cut(s)	14, 88, 118, 122, 160
FaqI	GGGAC	3 cut(s)	58, 134, 157
FatI	CATG	3 cut(s)	86, 116, 158
Fnu4HI	GCNGC	2 cut(s)	240, 243
Fsp4HI	GCNGC	2 cut(s)	240, 243
FspBI	CTAG	1 cut(s)	21
GluI	GCNGC	2 cut(s)	240, 243
HaeIII	GGCC	1 cut(s)	93
HapII	CCGG	2 cut(s)	50, 175
HgaI	GACGC	1 cut(s)	60
Hin1II	CATG	3 cut(s)	90, 120, 162
HindIII	AAGCTT	1 cut(s)	266
HinfI	GANTC	2 cut(s)	171, 261
HpaII	CCGG	2 cut(s)	50, 175
Hpy166II	GTNNAC	2 cut(s)	62, 260
Hpy188I	TCNGA	2 cut(s)	103, 296
Hpy188III	TCNNGA	1 cut(s)	329
Hpy8I	GTNNAC	2 cut(s)	62, 260
HpyCH4III	ACNGT	2 cut(s)	66, 148
HpyCH4V	TGCA	6 cut(s)	62, 120, 155, 165, 225, 239
HpyF10VI	GCNNNNNNNGC	2 cut(s)	68, 77
HpyF3I	CTNAG	3 cut(s)	131, 182, 195
Hsp92II	CATG	3 cut(s)	90, 120, 162
Lsp1109I	GCAGC	2 cut(s)	229, 251
LweI	GCATC	1 cut(s)	164
MaeI	CTAG	1 cut(s)	21
MaeIII	GTNAC	2 cut(s)	82, 341
MboII	GAAGA	1 cut(s)	278
MfeI	CAATTG	2 cut(s)	253, 337
MhlI	GDGCHC	2 cut(s)	50, 64
MlsI	TGGCCA	1 cut(s)	93
MluCI	AATT	3 cut(s)	123, 253, 337
MluNI	TGGCCA	1 cut(s)	93
MlyI	GAGTC	2 cut(s)	180, 255
MnlI	CCTC	5 cut(s)	28, 50, 126, 284, 340
Mox20I	TGGCCA	1 cut(s)	93
Mph1103I	ATGCAT	1 cut(s)	122
MscI	TGGCCA	1 cut(s)	93
MseI	TTAA	1 cut(s)	270
Msp20I	TGGCCA	1 cut(s)	93
MspA1I	CMGCKG	1 cut(s)	242
MspI	CCGG	2 cut(s)	50, 175
MspR9I	CCNGG	2 cut(s)	50, 95
MunI	CAATTG	2 cut(s)	253, 337
MvaI	CCWGG	1 cut(s)	95
MwoI	GCNNNNNNNGC	2 cut(s)	68, 77
NciI	CCSGG	1 cut(s)	50
NlaIII	CATG	3 cut(s)	90, 120, 162
NlaIV	GGNNCC	2 cut(s)	145, 179
NmeAIII	GCCGAG	1 cut(s)	170
NmuCI	GTSAC	2 cut(s)	82, 341
NsiI	ATGCAT	1 cut(s)	122
NspI	RCATGY	1 cut(s)	90
PaqCI	CACCTGC	1 cut(s)	216
PciI	ACATGT	1 cut(s)	86
PcsI	WCGNNNNNNNCGW	1 cut(s)	39
PflFI	GACNNNGTC	1 cut(s)	347
PkrI	GCNGC	2 cut(s)	241, 244
PleI	GAGTC	2 cut(s)	179, 255
PpsI	GAGTC	2 cut(s)	179, 255
PscI	ACATGT	1 cut(s)	86
Psp6I	CCWGG	1 cut(s)	93
PspGI	CCWGG	1 cut(s)	93
PspN4I	GGNNCC	2 cut(s)	145, 179
PspPI	GGNCC	3 cut(s)	37, 144, 349
PsyI	GACNNNGTC	1 cut(s)	347
PvuII	CAGCTG	1 cut(s)	242
SaqAI	TTAA	1 cut(s)	270
SatI	GCNGC	2 cut(s)	240, 243
Sau96I	GGNCC	3 cut(s)	37, 144, 349
SchI	GAGTC	2 cut(s)	180, 255
ScrFI	CCNGG	2 cut(s)	50, 95
SduI	GDGCHC	2 cut(s)	50, 64
SetI	ASST	8 cut(s)	26, 99, 132, 230, 244, 270, 276, 351
SfaNI	GCATC	1 cut(s)	164
SfcI	CTRYAG	1 cut(s)	12
SinI	GGWCC	3 cut(s)	37, 144, 349
SmlI	CTYRAG	1 cut(s)	263
SmoI	CTYRAG	1 cut(s)	263
Sse9I	AATT	3 cut(s)	123, 253, 337
SsiI	CCGC	1 cut(s)	211
SspMI	CTAG	1 cut(s)	21
StyD4I	CCNGG	2 cut(s)	48, 93
TaaI	ACNGT	2 cut(s)	66, 148
TaqI	TCGA	2 cut(s)	207, 247
TasI	AATT	3 cut(s)	123, 253, 337
Tru1I	TTAA	1 cut(s)	270
Tru9I	TTAA	1 cut(s)	270
TseFI	GTSAC	2 cut(s)	82, 341
TseI	GCWGC	2 cut(s)	239, 242
Tsp45I	GTSAC	2 cut(s)	82, 341
TspGWI	ACGGA	1 cut(s)	208
Tth111I	GACNNNGTC	1 cut(s)	347
VneI	GTGCAC	1 cut(s)	60
VpaK11BI	GGWCC	3 cut(s)	37, 144, 349
XceI	RCATGY	1 cut(s)	90
XspI	CTAG	1 cut(s)	21
Zsp2I	ATGCAT	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.