Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001256.1

Orthogroup ID

OG0018915

Physical Location & Seq

Genomic Coordinates Reverse (-)

20959 .. 21896

Gene Structure 938 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001256.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

atggcaagttctatagcctctaggttggctttcgtggtcctcgtgtgcctggtggttggtgcaccgttagcgtcccacgccgtcacatgtggccaggtgtcagaaagcgtgagaccatgcataatttacctgaggaatggtgggaccgtccctgcatcatgttgcaatggagtccggttccttagcaactcggctaagaccaccatcgaccgccagtccgtttgcaggtgcttggttgcagctgctcgaagcaattgtggactcaagcttaacctcgtggctggtcttccaatcagatgtggtgttaggcttccttacacgattagtccggacaccaattatgacgagccactggcatcaccgcagtgtgtggtcctgtcgcgcggggagtttcgttgctattgcttggaagggctgtttgggaattgtcgattgagactttggcaaggtggttttggcagtgcagtttggtgtgatgtctccatggcgaggagccacaagttgtggcgttgtcatggcgacttagttgggtggaacacgtacaaccccatccttggcgtgatgaaaatgagactgggcttgggccaggccattctggctcggtttgggttggctttctttgtgttgttcttttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001101 GO:0003006 GO:0003674 GO:0005215 GO:0005319 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0005911 GO:0006649 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006950 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009505 GO:0009506 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0009628 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009889 GO:0009987 GO:0010026 GO:0010035 GO:0010154 GO:0010556 GO:0010876 GO:0012505 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016049 GO:0019222 GO:0022412 GO:0022414 GO:0030054 GO:0030154 GO:0030312 GO:0031410 GO:0031976 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0033036 GO:0040007 GO:0042221 GO:0042335 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0060255 GO:0060560 GO:0061024 GO:0061458 GO:0065007 GO:0071702 GO:0071840 GO:0071944 GO:0090376 GO:0090378 GO:0090558 GO:0090627 GO:0097708 GO:0098791 GO:1901700 GO:1901957

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tryp_alpha_amyl

Protein Analysis

211

Amino Acids

22.87

Weight (kDa)

9.25

Isoelectric Point (pI)

42.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018915)

Species	Orthologous Gene IDs
prunus_persica	Prupe.6G292900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0460581
rosa_multiflora	Rmu_sc0001256.1_g000004
rosa_roxburghii	Rroxscaffold_6G00419350
rosa_rugosa	Rorug03G0044100
rosa_samantha	Rh3AG102200 Rh3CG107800 Rh3DG107300
rosa_wichuraiana	Rw3G008680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	216
Acc36I	ACCTGC	1 cut(s)	216
AccII	CGCG	2 cut(s)	382, 384
AccIII	TCCGGA	1 cut(s)	328
AciI	CCGC	3 cut(s)	211, 362, 384
AcoI	YGGCCR	1 cut(s)	91
AfaI	GTAC	1 cut(s)	542
AfiI	CCNNNNNNNGG	3 cut(s)	225, 489, 554
AflIII	ACRYGT	2 cut(s)	86, 537
AhdI	GACNNNNNGTC	1 cut(s)	214
AjnI	CCWGG	3 cut(s)	48, 93, 585
AjuI	GAANNNNNNNTTGG	2 cut(s)	402, 434
AleI	CACNNNNGTG	1 cut(s)	364
AluBI	AGCT	2 cut(s)	242, 268
AluI	AGCT	2 cut(s)	242, 268
Alw21I	GWGCWC	1 cut(s)	64
Alw26I	GTCTC	4 cut(s)	106, 430, 484, 565
Alw44I	GTGCAC	1 cut(s)	60
Aor13HI	TCCGGA	1 cut(s)	328
AoxI	GGCC	3 cut(s)	91, 583, 588
ApaLI	GTGCAC	1 cut(s)	60
ApeKI	GCWGC	2 cut(s)	239, 242
AspLEI	GCGC	1 cut(s)	384
AspS9I	GGNCC	4 cut(s)	37, 144, 373, 583
AsuHPI	GGTGA	1 cut(s)	351
AvaII	GGWCC	3 cut(s)	37, 144, 373
AxyI	CCTNAGG	1 cut(s)	131
BaeGI	GKGCMC	1 cut(s)	64
BalI	TGGCCA	1 cut(s)	93
BauI	CACGAG	2 cut(s)	41, 275
BbsI	GAAGAC	1 cut(s)	278
Bbv12I	GWGCWC	1 cut(s)	64
BbvI	GCAGC	2 cut(s)	229, 251
BccI	CCATC	2 cut(s)	212, 557
BceAI	ACGGC	1 cut(s)	65
BciT130I	CCWGG	3 cut(s)	50, 95, 587
BcoDI	GTCTC	4 cut(s)	106, 430, 484, 565
BfaI	CTAG	1 cut(s)	21
BfmI	CTRYAG	1 cut(s)	12
BfuAI	ACCTGC	1 cut(s)	216
BglI	GCCNNNNNGGC	1 cut(s)	596
BisI	GCNGC	2 cut(s)	240, 243
BlsI	GCNGC	2 cut(s)	241, 244
Bme1390I	CCNGG	3 cut(s)	50, 95, 587
Bme18I	GGWCC	3 cut(s)	37, 144, 373
BmeRI	GACNNNNNGTC	1 cut(s)	214
BmgT120I	GGNCC	4 cut(s)	37, 144, 373, 583
BmiI	GGNNCC	3 cut(s)	145, 179, 494
BmrFI	CCNGG	3 cut(s)	50, 95, 587
BmrI	ACTGGG	1 cut(s)	584
BmsI	GCATC	2 cut(s)	164, 365
BmuI	ACTGGG	1 cut(s)	584
BpiI	GAAGAC	1 cut(s)	278
Bpu10I	CCTNAGC	1 cut(s)	182
BpuEI	CTTGAG	1 cut(s)	248
BsaAI	YACGTR	1 cut(s)	540
BsaI	GGTCTC	1 cut(s)	106
BsaJI	CCNNGG	2 cut(s)	483, 553
BsaWI	WCCGGW	2 cut(s)	174, 328
Bsc4I	CCNNNNNNNGG	3 cut(s)	225, 489, 554
Bse1I	ACTGG	3 cut(s)	214, 357, 579
Bse21I	CCTNAGG	1 cut(s)	131
Bse3DI	GCAATG	1 cut(s)	172
BseAI	TCCGGA	1 cut(s)	328
BseBI	CCWGG	3 cut(s)	50, 95, 587
BseDI	CCNNGG	2 cut(s)	483, 553
BseGI	GGATG	1 cut(s)	549
BseLI	CCNNNNNNNGG	3 cut(s)	225, 489, 554
BseMI	GCAATG	1 cut(s)	172
BseMII	CTCAG	1 cut(s)	122
BseNI	ACTGG	3 cut(s)	214, 357, 579
BseRI	GAGGAG	1 cut(s)	505
BseSI	GKGCMC	1 cut(s)	64
BseXI	GCAGC	2 cut(s)	229, 251
BsgI	GTGCAG	1 cut(s)	483
Bsh1236I	CGCG	2 cut(s)	382, 384
Bsh1285I	CGRYCG	1 cut(s)	211
BshFI	GGCC	3 cut(s)	93, 585, 590
BsiEI	CGRYCG	1 cut(s)	211
BsiHKAI	GWGCWC	1 cut(s)	64
BsiSI	CCGG	2 cut(s)	175, 329
BslFI	GGGAC	3 cut(s)	58, 134, 157
BslI	CCNNNNNNNGG	3 cut(s)	225, 489, 554
BsmAI	GTCTC	4 cut(s)	106, 430, 484, 565
BsmFI	GGGAC	3 cut(s)	58, 134, 157
BsnI	GGCC	3 cut(s)	93, 585, 590
Bso31I	GGTCTC	1 cut(s)	106
Bsp1286I	GDGCHC	1 cut(s)	64
Bsp13I	TCCGGA	1 cut(s)	328
Bsp19I	CCATGG	1 cut(s)	483
BspACI	CCGC	3 cut(s)	211, 362, 384
BspANI	GGCC	3 cut(s)	93, 585, 590
BspCNI	CTCAG	1 cut(s)	123
BspEI	TCCGGA	1 cut(s)	328
BspFNI	CGCG	2 cut(s)	382, 384
BspLI	GGNNCC	3 cut(s)	145, 179, 494
BspMI	ACCTGC	1 cut(s)	216
BspTNI	GGTCTC	1 cut(s)	106
BsrDI	GCAATG	1 cut(s)	172
BsrI	ACTGG	3 cut(s)	214, 357, 579
BssECI	CCNNGG	2 cut(s)	483, 553
BssSI	CACGAG	2 cut(s)	41, 275
BssT1I	CCWWGG	2 cut(s)	483, 553
Bst2BI	CACGAG	2 cut(s)	41, 275
Bst2UI	CCWGG	3 cut(s)	50, 95, 587
Bst4CI	ACNGT	2 cut(s)	66, 148
BstBAI	YACGTR	1 cut(s)	540
BstDEI	CTNAG	4 cut(s)	131, 182, 195, 523
BstDSI	CCRYGG	1 cut(s)	483
BstF5I	GGATG	1 cut(s)	549
BstFNI	CGCG	2 cut(s)	382, 384
BstHHI	GCGC	1 cut(s)	384
BstMAI	GTCTC	4 cut(s)	106, 430, 484, 565
BstMCI	CGRYCG	1 cut(s)	211
BstMWI	GCNNNNNNNGC	3 cut(s)	68, 77, 596
BstNI	CCWGG	3 cut(s)	50, 95, 587
BstNSI	RCATGY	1 cut(s)	90
BstSCI	CCNGG	3 cut(s)	48, 93, 585
BstSFI	CTRYAG	1 cut(s)	12
BstSLI	GKGCMC	1 cut(s)	64
BstUI	CGCG	2 cut(s)	382, 384
BstV1I	GCAGC	2 cut(s)	229, 251
BstV2I	GAAGAC	1 cut(s)	278
Bsu36I	CCTNAGG	1 cut(s)	131
BsuRI	GGCC	3 cut(s)	93, 585, 590
BtgI	CCRYGG	1 cut(s)	483
BtsCI	GGATG	1 cut(s)	549
BtsI	GCAGTG	2 cut(s)	371, 466
BtsIMutI	CAGTG	3 cut(s)	350, 371, 466
BveI	ACCTGC	1 cut(s)	216
CfoI	GCGC	1 cut(s)	384
Cfr13I	GGNCC	4 cut(s)	37, 144, 373, 583
CseI	GACGC	1 cut(s)	60
Csp6I	GTAC	1 cut(s)	541
CviAII	CATG	5 cut(s)	87, 117, 159, 484, 515
CviQI	GTAC	1 cut(s)	541
DdeI	CTNAG	4 cut(s)	131, 182, 195, 523
DriI	GACNNNNNGTC	1 cut(s)	214
EaeI	YGGCCR	1 cut(s)	91
Eam1105I	GACNNNNNGTC	1 cut(s)	214
Eco130I	CCWWGG	2 cut(s)	483, 553
Eco31I	GGTCTC	1 cut(s)	106
Eco47I	GGWCC	3 cut(s)	37, 144, 373
Eco81I	CCTNAGG	1 cut(s)	131
EcoRII	CCWGG	3 cut(s)	48, 93, 585
EcoT14I	CCWWGG	2 cut(s)	483, 553
EcoT22I	ATGCAT	1 cut(s)	122
ErhI	CCWWGG	2 cut(s)	483, 553
FaeI	CATG	5 cut(s)	90, 120, 162, 487, 518
FaiI	YATR	8 cut(s)	14, 88, 118, 122, 160, 342, 485, 516
FaqI	GGGAC	3 cut(s)	58, 134, 157
FatI	CATG	5 cut(s)	86, 116, 158, 483, 514
FauI	CCCGC	1 cut(s)	377
Fnu4HI	GCNGC	2 cut(s)	240, 243
FokI	GGATG	1 cut(s)	536
Fsp4HI	GCNGC	2 cut(s)	240, 243
FspBI	CTAG	1 cut(s)	21
GlaI	GCGC	1 cut(s)	383
GluI	GCNGC	2 cut(s)	240, 243
HaeIII	GGCC	3 cut(s)	93, 585, 590
HapII	CCGG	2 cut(s)	175, 329
HgaI	GACGC	1 cut(s)	60
HhaI	GCGC	1 cut(s)	384
Hin1II	CATG	5 cut(s)	90, 120, 162, 487, 518
Hin6I	GCGC	1 cut(s)	382
HinP1I	GCGC	1 cut(s)	382
HindIII	AAGCTT	1 cut(s)	266
HinfI	GANTC	2 cut(s)	171, 261
HpaII	CCGG	2 cut(s)	175, 329
HphI	GGTGA	1 cut(s)	351
Hpy166II	GTNNAC	2 cut(s)	62, 260
Hpy188I	TCNGA	2 cut(s)	103, 296
Hpy188III	TCNNGA	1 cut(s)	329
Hpy8I	GTNNAC	2 cut(s)	62, 260
HpyAV	CCTTC	1 cut(s)	404
HpyCH4III	ACNGT	2 cut(s)	66, 148
HpyCH4IV	ACGT	1 cut(s)	539
HpyCH4V	TGCA	7 cut(s)	62, 120, 155, 165, 225, 239, 464
HpyF10VI	GCNNNNNNNGC	3 cut(s)	68, 77, 596
HpyF3I	CTNAG	4 cut(s)	131, 182, 195, 523
HpySE526I	ACGT	1 cut(s)	539
Hsp92II	CATG	5 cut(s)	90, 120, 162, 487, 518
HspAI	GCGC	1 cut(s)	382
Kpn2I	TCCGGA	1 cut(s)	328
LmnI	GCTCC	1 cut(s)	492
Lsp1109I	GCAGC	2 cut(s)	229, 251
LweI	GCATC	2 cut(s)	164, 365
MaeI	CTAG	1 cut(s)	21
MaeII	ACGT	1 cut(s)	539
MaeIII	GTNAC	1 cut(s)	82
MboII	GAAGA	1 cut(s)	278
MfeI	CAATTG	1 cut(s)	253
MhlI	GDGCHC	1 cut(s)	64
MlsI	TGGCCA	1 cut(s)	93
MluCI	AATT	4 cut(s)	123, 253, 337, 424
MluNI	TGGCCA	1 cut(s)	93
MlyI	GAGTC	2 cut(s)	180, 255
MnlI	CCTC	5 cut(s)	28, 50, 126, 284, 483
Mox20I	TGGCCA	1 cut(s)	93
Mph1103I	ATGCAT	1 cut(s)	122
MroI	TCCGGA	1 cut(s)	328
MscI	TGGCCA	1 cut(s)	93
MseI	TTAA	1 cut(s)	270
MslI	CAYNNNNRTG	1 cut(s)	364
Msp20I	TGGCCA	1 cut(s)	93
MspA1I	CMGCKG	1 cut(s)	242
MspI	CCGG	2 cut(s)	175, 329
MspR9I	CCNGG	3 cut(s)	50, 95, 587
MunI	CAATTG	1 cut(s)	253
MvaI	CCWGG	3 cut(s)	50, 95, 587
MvnI	CGCG	2 cut(s)	382, 384
MwoI	GCNNNNNNNGC	3 cut(s)	68, 77, 596
NcoI	CCATGG	1 cut(s)	483
NlaIII	CATG	5 cut(s)	90, 120, 162, 487, 518
NlaIV	GGNNCC	3 cut(s)	145, 179, 494
NmeAIII	GCCGAG	1 cut(s)	170
NmuCI	GTSAC	1 cut(s)	82
NsiI	ATGCAT	1 cut(s)	122
NspI	RCATGY	1 cut(s)	90
OliI	CACNNNNGTG	1 cut(s)	364
PaqCI	CACCTGC	1 cut(s)	216
PciI	ACATGT	1 cut(s)	86
PcsI	WCGNNNNNNNCGW	1 cut(s)	39
PkrI	GCNGC	2 cut(s)	241, 244
PleI	GAGTC	2 cut(s)	179, 255
PpsI	GAGTC	2 cut(s)	179, 255
Ppu21I	YACGTR	1 cut(s)	540
PscI	ACATGT	1 cut(s)	86
Psp6I	CCWGG	3 cut(s)	48, 93, 585
PspGI	CCWGG	3 cut(s)	48, 93, 585
PspN4I	GGNNCC	3 cut(s)	145, 179, 494
PspPI	GGNCC	4 cut(s)	37, 144, 373, 583
PvuII	CAGCTG	1 cut(s)	242
RsaI	GTAC	1 cut(s)	542
RsaNI	GTAC	1 cut(s)	541
RseI	CAYNNNNRTG	1 cut(s)	364
SaqAI	TTAA	1 cut(s)	270
SatI	GCNGC	2 cut(s)	240, 243
Sau96I	GGNCC	4 cut(s)	37, 144, 373, 583
SchI	GAGTC	2 cut(s)	180, 255
ScrFI	CCNGG	3 cut(s)	50, 95, 587
SduI	GDGCHC	1 cut(s)	64
SetI	ASST	9 cut(s)	26, 99, 132, 230, 244, 270, 276, 451, 542
SfaNI	GCATC	2 cut(s)	164, 365
SfcI	CTRYAG	1 cut(s)	12
SinI	GGWCC	3 cut(s)	37, 144, 373
SmiMI	CAYNNNNRTG	1 cut(s)	364
SmlI	CTYRAG	1 cut(s)	263
SmoI	CTYRAG	1 cut(s)	263
Sse9I	AATT	4 cut(s)	123, 253, 337, 424
SsiI	CCGC	3 cut(s)	211, 362, 384
SspMI	CTAG	1 cut(s)	21
StyD4I	CCNGG	3 cut(s)	48, 93, 585
StyI	CCWWGG	2 cut(s)	483, 553
TaaI	ACNGT	2 cut(s)	66, 148
TaiI	ACGT	1 cut(s)	542
TaqI	TCGA	3 cut(s)	207, 247, 430
TasI	AATT	4 cut(s)	123, 253, 337, 424
Tru1I	TTAA	1 cut(s)	270
Tru9I	TTAA	1 cut(s)	270
TscAI	CASTG	3 cut(s)	357, 371, 466
TseFI	GTSAC	1 cut(s)	82
TseI	GCWGC	2 cut(s)	239, 242
Tsp45I	GTSAC	1 cut(s)	82
TspDTI	ATGAA	1 cut(s)	578
TspGWI	ACGGA	1 cut(s)	208
TspRI	CASTG	3 cut(s)	357, 371, 466
VneI	GTGCAC	1 cut(s)	60
VpaK11BI	GGWCC	3 cut(s)	37, 144, 373
XceI	RCATGY	1 cut(s)	90
XspI	CTAG	1 cut(s)	21
Zsp2I	ATGCAT	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.