Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0018915

Physical Location & Seq

Genomic Coordinates Forward (+)

40828365 .. 40830741

Gene Structure 2377 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00419350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGACAAGTTCTGTAGCCTCTAGGTTGGCTTTCGTGGTCCTCGTGTGCCTGGTGGTTGGTGCCCCGTTGGCGTCCCACGCCATCACATGTGGCCAGGTGTCAGAAAGCGTGAGACCATGCATAATTTACCTGAAGAATGGTGGGACTGTCCCTGCACCATGTTGCAATGGAGTCCGGTACCTTAGCAAGTCGGCTAAGACCACGATCGACCGCCAGTCCGTTTGCAGGTGCTTGGTTGCAGCTGCTCGAAGCAATTGCGGACTCAAGCTTAACCTCGTGGCGGGTCTTCCAATTAGATGTGGTGTTAGGCTCCCTTACACGATTAGTCCGGACACTAATTGTGACGATCTCGTGGATGAGTGGGTTGTAGGGATGCTTGATCTTAGCAGTGCGAGTCGAGGAGCCACAAGTTGTGGCGGCTCGAGGAGCGGCGTTGTCATGGGTGGAGGGGCTGTACGCGTAGCTTGGCACTCTATTGTGCAACTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001101 GO:0003006 GO:0003674 GO:0005215 GO:0005319 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0005911 GO:0006649 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006950 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009505 GO:0009506 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0009628 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009889 GO:0009987 GO:0010026 GO:0010035 GO:0010154 GO:0010556 GO:0010876 GO:0012505 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016049 GO:0019222 GO:0022412 GO:0022414 GO:0030054 GO:0030154 GO:0030312 GO:0031410 GO:0031976 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0033036 GO:0040007 GO:0042221 GO:0042335 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0060255 GO:0060560 GO:0061024 GO:0061458 GO:0065007 GO:0071702 GO:0071840 GO:0071944 GO:0090376 GO:0090378 GO:0090558 GO:0090627 GO:0097708 GO:0098791 GO:1901700 GO:1901957

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tryp_alpha_amyl

Protein Analysis

162

Amino Acids

16.78

Weight (kDa)

8.98

Isoelectric Point (pI)

33.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tryp_alpha_amyl	PF00234	30 - 114	2.5e-10	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018915)

Species	Orthologous Gene IDs
prunus_persica	Prupe.6G292900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0460581
rosa_multiflora	Rmu_sc0001256.1_g000004
rosa_roxburghii	Rroxscaffold_6G00419350
rosa_rugosa	Rorug03G0044100
rosa_samantha	Rh3AG102200 Rh3CG107800 Rh3DG107300
rosa_wichuraiana	Rw3G008680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	216
Acc36I	ACCTGC	1 cut(s)	216
Acc65I	GGTACC	1 cut(s)	177
AccB1I	GGYRCC	2 cut(s)	59, 177
AccBSI	CCGCTC	1 cut(s)	429
AccII	CGCG	1 cut(s)	459
AccIII	TCCGGA	1 cut(s)	328
AciI	CCGC	5 cut(s)	211, 258, 281, 417, 429
AcoI	YGGCCR	1 cut(s)	91
AcuI	CTGAAG	1 cut(s)	152
AcyI	GRCGYC	1 cut(s)	71
AfaI	GTAC	2 cut(s)	179, 456
AfiI	CCNNNNNNNGG	2 cut(s)	225, 280
AflIII	ACRYGT	2 cut(s)	86, 457
AhdI	GACNNNNNGTC	1 cut(s)	214
AjnI	CCWGG	2 cut(s)	48, 93
AluBI	AGCT	3 cut(s)	242, 268, 464
AluI	AGCT	3 cut(s)	242, 268, 464
Alw26I	GTCTC	1 cut(s)	106
Ama87I	CYCGRG	1 cut(s)	421
Aor13HI	TCCGGA	1 cut(s)	328
AoxI	GGCC	1 cut(s)	91
ApeKI	GCWGC	2 cut(s)	239, 242
Asp718I	GGTACC	1 cut(s)	177
AspS9I	GGNCC	1 cut(s)	37
AvaI	CYCGRG	1 cut(s)	421
AvaII	GGWCC	1 cut(s)	37
BaeGI	GKGCMC	1 cut(s)	64
BalI	TGGCCA	1 cut(s)	93
BanI	GGYRCC	2 cut(s)	59, 177
BauI	CACGAG	3 cut(s)	41, 275, 350
BbsI	GAAGAC	1 cut(s)	278
BbvI	GCAGC	2 cut(s)	229, 251
BccI	CCATC	1 cut(s)	89
BcgI	CGANNNNNNTGC	2 cut(s)	237, 271
BciT130I	CCWGG	2 cut(s)	50, 95
BcoDI	GTCTC	1 cut(s)	106
BfaI	CTAG	1 cut(s)	21
BfmI	CTRYAG	1 cut(s)	12
BfuAI	ACCTGC	1 cut(s)	216
BglI	GCCNNNNNGGC	1 cut(s)	68
BisI	GCNGC	4 cut(s)	240, 243, 418, 430
BlsI	GCNGC	4 cut(s)	241, 244, 419, 431
Bme1390I	CCNGG	2 cut(s)	50, 95
Bme18I	GGWCC	1 cut(s)	37
BmeRI	GACNNNNNGTC	1 cut(s)	214
BmeT110I	CYCGRG	1 cut(s)	421
BmgT120I	GGNCC	1 cut(s)	37
BmiI	GGNNCC	4 cut(s)	61, 179, 311, 403
BmrFI	CCNGG	2 cut(s)	50, 95
BmsI	GCATC	1 cut(s)	363
BpiI	GAAGAC	1 cut(s)	278
Bpu10I	CCTNAGC	1 cut(s)	182
BpuEI	CTTGAG	1 cut(s)	248
BsaHI	GRCGYC	1 cut(s)	71
BsaI	GGTCTC	1 cut(s)	106
BsaWI	WCCGGW	2 cut(s)	174, 328
BsaXI	ACNNNNNCTCC	2 cut(s)	438, 468
Bsc4I	CCNNNNNNNGG	2 cut(s)	225, 280
Bse1I	ACTGG	1 cut(s)	214
Bse3DI	GCAATG	1 cut(s)	172
BseAI	TCCGGA	1 cut(s)	328
BseBI	CCWGG	2 cut(s)	50, 95
BseGI	GGATG	2 cut(s)	361, 378
BseLI	CCNNNNNNNGG	2 cut(s)	225, 280
BseMI	GCAATG	1 cut(s)	172
BseNI	ACTGG	1 cut(s)	214
BseRI	GAGGAG	2 cut(s)	414, 439
BseSI	GKGCMC	1 cut(s)	64
BseXI	GCAGC	2 cut(s)	229, 251
BsgI	GTGCAG	1 cut(s)	138
Bsh1236I	CGCG	1 cut(s)	459
Bsh1285I	CGRYCG	2 cut(s)	207, 211
BshFI	GGCC	1 cut(s)	93
BshNI	GGYRCC	2 cut(s)	59, 177
BsiEI	CGRYCG	2 cut(s)	207, 211
BsiHKCI	CYCGRG	1 cut(s)	421
BsiSI	CCGG	2 cut(s)	175, 329
BslFI	GGGAC	3 cut(s)	58, 134, 157
BslI	CCNNNNNNNGG	2 cut(s)	225, 280
BsmAI	GTCTC	1 cut(s)	106
BsmFI	GGGAC	3 cut(s)	58, 134, 157
BsnI	GGCC	1 cut(s)	93
Bso31I	GGTCTC	1 cut(s)	106
BsoBI	CYCGRG	1 cut(s)	421
Bsp1286I	GDGCHC	1 cut(s)	64
Bsp13I	TCCGGA	1 cut(s)	328
Bsp143I	GATC	3 cut(s)	204, 346, 379
BspACI	CCGC	5 cut(s)	211, 258, 281, 417, 429
BspANI	GGCC	1 cut(s)	93
BspEI	TCCGGA	1 cut(s)	328
BspFNI	CGCG	1 cut(s)	459
BspLI	GGNNCC	4 cut(s)	61, 179, 311, 403
BspMI	ACCTGC	1 cut(s)	216
BspT107I	GGYRCC	2 cut(s)	59, 177
BspTNI	GGTCTC	1 cut(s)	106
BsrBI	CCGCTC	1 cut(s)	429
BsrDI	GCAATG	1 cut(s)	172
BsrI	ACTGG	1 cut(s)	214
BssMI	GATC	3 cut(s)	204, 346, 379
BssNI	GRCGYC	1 cut(s)	71
BssSI	CACGAG	3 cut(s)	41, 275, 350
Bst2BI	CACGAG	3 cut(s)	41, 275, 350
Bst2UI	CCWGG	2 cut(s)	50, 95
Bst4CI	ACNGT	1 cut(s)	148
BstACI	GRCGYC	1 cut(s)	71
BstDEI	CTNAG	3 cut(s)	182, 195, 383
BstF5I	GGATG	2 cut(s)	361, 378
BstFNI	CGCG	1 cut(s)	459
BstKTI	GATC	3 cut(s)	207, 349, 382
BstMAI	GTCTC	1 cut(s)	106
BstMBI	GATC	3 cut(s)	204, 346, 379
BstMCI	CGRYCG	2 cut(s)	207, 211
BstMWI	GCNNNNNNNGC	3 cut(s)	68, 77, 426
BstNI	CCWGG	2 cut(s)	50, 95
BstNSI	RCATGY	1 cut(s)	90
BstSCI	CCNGG	2 cut(s)	48, 93
BstSFI	CTRYAG	1 cut(s)	12
BstSLI	GKGCMC	1 cut(s)	64
BstUI	CGCG	1 cut(s)	459
BstV1I	GCAGC	2 cut(s)	229, 251
BstV2I	GAAGAC	1 cut(s)	278
BsuRI	GGCC	1 cut(s)	93
BtsCI	GGATG	2 cut(s)	361, 378
BtsI	GCAGTG	1 cut(s)	394
BtsIMutI	CAGTG	1 cut(s)	394
BveI	ACCTGC	1 cut(s)	216
Cfr13I	GGNCC	1 cut(s)	37
CseI	GACGC	1 cut(s)	60
Csp6I	GTAC	2 cut(s)	178, 455
CviAII	CATG	4 cut(s)	87, 117, 159, 439
CviQI	GTAC	2 cut(s)	178, 455
DdeI	CTNAG	3 cut(s)	182, 195, 383
DpnI	GATC	3 cut(s)	206, 348, 381
DpnII	GATC	3 cut(s)	204, 346, 379
DriI	GACNNNNNGTC	1 cut(s)	214
EaeI	YGGCCR	1 cut(s)	91
Eam1105I	GACNNNNNGTC	1 cut(s)	214
Eco31I	GGTCTC	1 cut(s)	106
Eco47I	GGWCC	1 cut(s)	37
Eco57I	CTGAAG	1 cut(s)	152
Eco88I	CYCGRG	1 cut(s)	421
EcoRII	CCWGG	2 cut(s)	48, 93
EcoT22I	ATGCAT	1 cut(s)	122
FaeI	CATG	4 cut(s)	90, 120, 162, 442
FaiI	YATR	6 cut(s)	88, 118, 122, 160, 440, 487
FaqI	GGGAC	3 cut(s)	58, 134, 157
FatI	CATG	4 cut(s)	86, 116, 158, 438
FauI	CCCGC	1 cut(s)	274
Fnu4HI	GCNGC	4 cut(s)	240, 243, 418, 430
FokI	GGATG	2 cut(s)	368, 385
Fsp4HI	GCNGC	4 cut(s)	240, 243, 418, 430
FspBI	CTAG	1 cut(s)	21
GluI	GCNGC	4 cut(s)	240, 243, 418, 430
HaeIII	GGCC	1 cut(s)	93
HapII	CCGG	2 cut(s)	175, 329
HgaI	GACGC	1 cut(s)	60
Hin1I	GRCGYC	1 cut(s)	71
Hin1II	CATG	4 cut(s)	90, 120, 162, 442
HindIII	AAGCTT	1 cut(s)	266
HinfI	GANTC	3 cut(s)	171, 261, 394
HpaII	CCGG	2 cut(s)	175, 329
Hpy188I	TCNGA	1 cut(s)	103
Hpy188III	TCNNGA	1 cut(s)	329
HpyCH4III	ACNGT	1 cut(s)	148
HpyCH4V	TGCA	6 cut(s)	120, 155, 165, 225, 239, 481
HpyF10VI	GCNNNNNNNGC	3 cut(s)	68, 77, 426
HpyF3I	CTNAG	3 cut(s)	182, 195, 383
Hsp92I	GRCGYC	1 cut(s)	71
Hsp92II	CATG	4 cut(s)	90, 120, 162, 442
Kpn2I	TCCGGA	1 cut(s)	328
KpnI	GGTACC	1 cut(s)	181
Kzo9I	GATC	3 cut(s)	204, 346, 379
LmnI	GCTCC	3 cut(s)	315, 401, 426
Lsp1109I	GCAGC	2 cut(s)	229, 251
LweI	GCATC	1 cut(s)	363
MaeI	CTAG	1 cut(s)	21
MaeIII	GTNAC	1 cut(s)	341
MalI	GATC	3 cut(s)	206, 348, 381
MbiI	CCGCTC	1 cut(s)	429
MboI	GATC	3 cut(s)	204, 346, 379
MboII	GAAGA	2 cut(s)	145, 278
MfeI	CAATTG	1 cut(s)	253
MhlI	GDGCHC	1 cut(s)	64
MlsI	TGGCCA	1 cut(s)	93
MluCI	AATT	4 cut(s)	123, 253, 291, 337
MluI	ACGCGT	1 cut(s)	457
MluNI	TGGCCA	1 cut(s)	93
MlyI	GAGTC	3 cut(s)	180, 255, 403
MnlI	CCTC	6 cut(s)	28, 50, 284, 392, 417, 440
Mox20I	TGGCCA	1 cut(s)	93
Mph1103I	ATGCAT	1 cut(s)	122
MroI	TCCGGA	1 cut(s)	328
MscI	TGGCCA	1 cut(s)	93
MseI	TTAA	1 cut(s)	270
Msp20I	TGGCCA	1 cut(s)	93
MspA1I	CMGCKG	1 cut(s)	242
MspI	CCGG	2 cut(s)	175, 329
MspR9I	CCNGG	2 cut(s)	50, 95
MunI	CAATTG	1 cut(s)	253
MvaI	CCWGG	2 cut(s)	50, 95
MvnI	CGCG	1 cut(s)	459
MwoI	GCNNNNNNNGC	3 cut(s)	68, 77, 426
NdeII	GATC	3 cut(s)	204, 346, 379
NlaIII	CATG	4 cut(s)	90, 120, 162, 442
NlaIV	GGNNCC	4 cut(s)	61, 179, 311, 403
NmuCI	GTSAC	1 cut(s)	341
NsiI	ATGCAT	1 cut(s)	122
NspI	RCATGY	1 cut(s)	90
PaeR7I	CTCGAG	1 cut(s)	421
PaqCI	CACCTGC	1 cut(s)	216
PciI	ACATGT	1 cut(s)	86
PcsI	WCGNNNNNNNCGW	1 cut(s)	39
PkrI	GCNGC	4 cut(s)	241, 244, 419, 431
Ple19I	CGATCG	1 cut(s)	207
PleI	GAGTC	3 cut(s)	179, 255, 402
PpsI	GAGTC	3 cut(s)	179, 255, 402
PscI	ACATGT	1 cut(s)	86
Psp6I	CCWGG	2 cut(s)	48, 93
PspGI	CCWGG	2 cut(s)	48, 93
PspN4I	GGNNCC	4 cut(s)	61, 179, 311, 403
PspPI	GGNCC	1 cut(s)	37
PspXI	VCTCGAGB	1 cut(s)	421
PvuI	CGATCG	1 cut(s)	207
PvuII	CAGCTG	1 cut(s)	242
RsaI	GTAC	2 cut(s)	179, 456
RsaNI	GTAC	2 cut(s)	178, 455
SaqAI	TTAA	1 cut(s)	270
SatI	GCNGC	4 cut(s)	240, 243, 418, 430
Sau3AI	GATC	3 cut(s)	204, 346, 379
Sau96I	GGNCC	1 cut(s)	37
SchI	GAGTC	3 cut(s)	180, 255, 403
ScrFI	CCNGG	2 cut(s)	50, 95
SduI	GDGCHC	1 cut(s)	64
SetI	ASST	9 cut(s)	26, 99, 132, 183, 230, 244, 270, 276, 466
SfaNI	GCATC	1 cut(s)	363
SfcI	CTRYAG	1 cut(s)	12
Sfr274I	CTCGAG	1 cut(s)	421
SinI	GGWCC	1 cut(s)	37
SlaI	CTCGAG	1 cut(s)	421
SmlI	CTYRAG	2 cut(s)	263, 421
SmoI	CTYRAG	2 cut(s)	263, 421
Sse9I	AATT	4 cut(s)	123, 253, 291, 337
SsiI	CCGC	5 cut(s)	211, 258, 281, 417, 429
SspMI	CTAG	1 cut(s)	21
StyD4I	CCNGG	2 cut(s)	48, 93
TaaI	ACNGT	1 cut(s)	148
TaqI	TCGA	4 cut(s)	207, 247, 397, 422
TasI	AATT	4 cut(s)	123, 253, 291, 337
TauI	GCSGC	2 cut(s)	420, 432
Tru1I	TTAA	1 cut(s)	270
Tru9I	TTAA	1 cut(s)	270
TscAI	CASTG	1 cut(s)	394
TseFI	GTSAC	1 cut(s)	341
TseI	GCWGC	2 cut(s)	239, 242
Tsp45I	GTSAC	1 cut(s)	341
TspGWI	ACGGA	1 cut(s)	208
TspRI	CASTG	1 cut(s)	394
VpaK11BI	GGWCC	1 cut(s)	37
XceI	RCATGY	1 cut(s)	90
XhoI	CTCGAG	1 cut(s)	421
XspI	CTAG	1 cut(s)	21
Zsp2I	ATGCAT	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.