Rorug03G0044100

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Forward (+)
3438156 .. 3438374
219 bp
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UTR
Exon/CDS
Intron
Rorug03G0044100.1

Sequence Viewer

Length: 219 bp
ATGAAGTTTACTGTGGAGTGGAAGGAGCTCGAGGACAGTTTCAAGTCGACCCGAAGGGTGCTCCAGACTCGGTTTGAGGAGTTAAAGGGTCCGGTGAAGGAGGTGGCGGAGATGGAGGCAAAGGAGGAGAAGCTGAAGATGGAGATGAAGGGGAGAGAGGAGTTGGGCGGAATCGAGGAGGTGGTAGAGCGAAGGAGGAGGGAGTTGGAGGAGAGATAG

Protein Analysis

72

Amino Acids

8.76

Weight (kDa)

5.39

Isoelectric Point (pI)

77.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018915)

Species Orthologous Gene IDs
prunus_persica Prupe.6G292900_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0460581
rosa_multiflora Rmu_sc0001256.1_g000004
rosa_roxburghii Rroxscaffold_6G00419350
rosa_rugosa Rorug03G0044100
rosa_samantha Rh3AG102200 Rh3CG107800 Rh3DG107300
rosa_wichuraiana Rw3G008680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 47
AciI CCGC 2 cut(s) 107, 168
AcuI CTGAAG 1 cut(s) 155
AgsI TTSAA 1 cut(s) 43
AluBI AGCT 2 cut(s) 28, 133
AluI AGCT 2 cut(s) 28, 133
Alw21I GWGCWC 2 cut(s) 30, 63
Ama87I CYCGRG 1 cut(s) 29
AspS9I GGNCC 1 cut(s) 89
AsuHPI GGTGA 1 cut(s) 106
AvaI CYCGRG 1 cut(s) 29
AvaII GGWCC 1 cut(s) 89
BanII GRGCYC 1 cut(s) 30
Bbv12I GWGCWC 2 cut(s) 30, 63
BccI CCATC 2 cut(s) 106, 133
Bme18I GGWCC 1 cut(s) 89
BmeT110I CYCGRG 1 cut(s) 29
BmgT120I GGNCC 1 cut(s) 89
BmiI GGNNCC 1 cut(s) 90
BpmI CTGGAG 1 cut(s) 47
BsaWI WCCGGW 1 cut(s) 91
BseRI GAGGAG 5 cut(s) 92, 140, 173, 191, 211
BsiHKAI GWGCWC 2 cut(s) 30, 63
BsiHKCI CYCGRG 1 cut(s) 29
BsiSI CCGG 1 cut(s) 92
BsoBI CYCGRG 1 cut(s) 29
Bsp1286I GDGCHC 2 cut(s) 30, 63
BspACI CCGC 2 cut(s) 107, 168
BspLI GGNNCC 1 cut(s) 90
Bst4CI ACNGT 2 cut(s) 13, 38
Cfr13I GGNCC 1 cut(s) 89
CviJI RGCY 2 cut(s) 28, 133
CviKI_1 RGCY 2 cut(s) 28, 133
EciI GGCGGA 2 cut(s) 122, 183
Ecl136II GAGCTC 1 cut(s) 28
Eco24I GRGCYC 1 cut(s) 30
Eco47I GGWCC 1 cut(s) 89
Eco53kI GAGCTC 1 cut(s) 28
Eco57I CTGAAG 1 cut(s) 155
Eco88I CYCGRG 1 cut(s) 29
EcoICRI GAGCTC 1 cut(s) 28
EcoT38I GRGCYC 1 cut(s) 30
FblI GTMKAC 1 cut(s) 47
FriOI GRGCYC 1 cut(s) 30
GsuI CTGGAG 1 cut(s) 47
HapII CCGG 1 cut(s) 92
HincII GTYRAC 1 cut(s) 48
HindII GTYRAC 1 cut(s) 48
HinfI GANTC 2 cut(s) 67, 171
HpaII CCGG 1 cut(s) 92
HphI GGTGA 1 cut(s) 106
Hpy166II GTNNAC 2 cut(s) 9, 48
Hpy188III TCNNGA 1 cut(s) 64
Hpy8I GTNNAC 2 cut(s) 9, 48
HpyAV CCTTC 5 cut(s) 16, 48, 91, 142, 186
HpyCH4III ACNGT 2 cut(s) 13, 38
LmnI GCTCC 2 cut(s) 25, 66
LpnPI CCDG 2 cut(s) 77, 105
MboII GAAGA 1 cut(s) 148
MhlI GDGCHC 2 cut(s) 30, 63
MlyI GAGTC 1 cut(s) 61
MmeI TCCRAC 1 cut(s) 186
MseI TTAA 1 cut(s) 83
MspI CCGG 1 cut(s) 92
NlaIV GGNNCC 1 cut(s) 90
PaeR7I CTCGAG 1 cut(s) 29
PfeI GAWTC 1 cut(s) 171
PleI GAGTC 1 cut(s) 61
PpsI GAGTC 1 cut(s) 61
Psp124BI GAGCTC 1 cut(s) 30
PspN4I GGNNCC 1 cut(s) 90
PspPI GGNCC 1 cut(s) 89
PspXI VCTCGAGB 1 cut(s) 29
SacI GAGCTC 1 cut(s) 30
SalI GTCGAC 1 cut(s) 46
SaqAI TTAA 1 cut(s) 83
Sau96I GGNCC 1 cut(s) 89
SchI GAGTC 1 cut(s) 61
SduI GDGCHC 2 cut(s) 30, 63
SetI ASST 4 cut(s) 30, 105, 135, 183
Sfr274I CTCGAG 1 cut(s) 29
SgeI CNNG 8 cut(s) 41, 43, 55, 63, 76, 81, 104, 187
SinI GGWCC 1 cut(s) 89
SlaI CTCGAG 1 cut(s) 29
SmlI CTYRAG 1 cut(s) 29
SmoI CTYRAG 1 cut(s) 29
SsiI CCGC 2 cut(s) 107, 168
SstI GAGCTC 1 cut(s) 30
TaaI ACNGT 2 cut(s) 13, 38
TaqI TCGA 3 cut(s) 30, 47, 174
TfiI GAWTC 1 cut(s) 171
Tru1I TTAA 1 cut(s) 83
Tru9I TTAA 1 cut(s) 83
TspDTI ATGAA 2 cut(s) 17, 161
VpaK11BI GGWCC 1 cut(s) 89
XhoI CTCGAG 1 cut(s) 29
XmiI GTMKAC 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.