Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0018915

Physical Location & Seq

Genomic Coordinates Reverse (-)

8638306 .. 8639684

Gene Structure 1379 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG107300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGACAAGTTCTATAGCCTCTAGGTTGGCTTTCGTGGTCCTCGTGTGCCTGGTGGTTGGCGCACCGTTAGCGTCCCACGCCGTCACATGTGGCCAGGTGTCAGAAAGCGTGAGACCATGCATAATTTACCTGAGGAATGGTGGGACCGTCCCTGCATCATGTTGCAATGGAGTCCGGTTCCTTAGCAACTCGGCTAAGACCACCATCGACCGCCAGTCCGTTTGCAGGTGCTTGGTTGCAGCTGCTCGAAGCAATTGTGGACTCAAGCTTAACCTCGTGGCTGGTCTTCCAATCAGATGTGGTGTTAGGCTTCCTTACACGATTAGTCCGGACACCAATTGTGACGAGATCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001101 GO:0003006 GO:0003674 GO:0005215 GO:0005319 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0005911 GO:0006649 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006950 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009505 GO:0009506 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0009628 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009889 GO:0009987 GO:0010026 GO:0010035 GO:0010154 GO:0010556 GO:0010876 GO:0012505 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016049 GO:0019222 GO:0022412 GO:0022414 GO:0030054 GO:0030154 GO:0030312 GO:0031410 GO:0031976 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0033036 GO:0040007 GO:0042221 GO:0042335 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0060255 GO:0060560 GO:0061024 GO:0061458 GO:0065007 GO:0071702 GO:0071840 GO:0071944 GO:0090376 GO:0090378 GO:0090558 GO:0090627 GO:0097708 GO:0098791 GO:1901700 GO:1901957

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tryp_alpha_amyl

Protein Analysis

118

Amino Acids

12.39

Weight (kDa)

8.94

Isoelectric Point (pI)

39.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tryp_alpha_amyl	PF00234	30 - 114	1.2e-10	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018915)

Species	Orthologous Gene IDs
prunus_persica	Prupe.6G292900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0460581
rosa_multiflora	Rmu_sc0001256.1_g000004
rosa_roxburghii	Rroxscaffold_6G00419350
rosa_rugosa	Rorug03G0044100
rosa_samantha	Rh3AG102200 Rh3CG107800 Rh3DG107300
rosa_wichuraiana	Rw3G008680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	216
Acc36I	ACCTGC	1 cut(s)	216
AccIII	TCCGGA	1 cut(s)	328
AciI	CCGC	1 cut(s)	211
AclWI	GGATC	1 cut(s)	343
AcoI	YGGCCR	1 cut(s)	91
AfiI	CCNNNNNNNGG	1 cut(s)	225
AflIII	ACRYGT	1 cut(s)	86
AhdI	GACNNNNNGTC	1 cut(s)	214
AjnI	CCWGG	2 cut(s)	48, 93
AluBI	AGCT	2 cut(s)	242, 268
AluI	AGCT	2 cut(s)	242, 268
Alw26I	GTCTC	1 cut(s)	106
AlwI	GGATC	1 cut(s)	343
Aor13HI	TCCGGA	1 cut(s)	328
AoxI	GGCC	1 cut(s)	91
ApeKI	GCWGC	2 cut(s)	239, 242
AspLEI	GCGC	1 cut(s)	62
AspS9I	GGNCC	2 cut(s)	37, 144
AvaII	GGWCC	2 cut(s)	37, 144
AxyI	CCTNAGG	1 cut(s)	131
BalI	TGGCCA	1 cut(s)	93
BauI	CACGAG	2 cut(s)	41, 275
BbsI	GAAGAC	1 cut(s)	278
BbvI	GCAGC	2 cut(s)	229, 251
BccI	CCATC	1 cut(s)	212
BceAI	ACGGC	1 cut(s)	65
BciT130I	CCWGG	2 cut(s)	50, 95
BcoDI	GTCTC	1 cut(s)	106
BfaI	CTAG	1 cut(s)	21
BfmI	CTRYAG	1 cut(s)	12
BfuAI	ACCTGC	1 cut(s)	216
BisI	GCNGC	2 cut(s)	240, 243
BlsI	GCNGC	2 cut(s)	241, 244
Bme1390I	CCNGG	2 cut(s)	50, 95
Bme18I	GGWCC	2 cut(s)	37, 144
BmeRI	GACNNNNNGTC	1 cut(s)	214
BmgT120I	GGNCC	2 cut(s)	37, 144
BmiI	GGNNCC	2 cut(s)	145, 179
BmrFI	CCNGG	2 cut(s)	50, 95
BmsI	GCATC	1 cut(s)	164
BpiI	GAAGAC	1 cut(s)	278
Bpu10I	CCTNAGC	1 cut(s)	182
BpuEI	CTTGAG	1 cut(s)	248
BsaI	GGTCTC	1 cut(s)	106
BsaWI	WCCGGW	2 cut(s)	174, 328
Bsc4I	CCNNNNNNNGG	1 cut(s)	225
Bse1I	ACTGG	1 cut(s)	214
Bse21I	CCTNAGG	1 cut(s)	131
Bse3DI	GCAATG	1 cut(s)	172
BseAI	TCCGGA	1 cut(s)	328
BseBI	CCWGG	2 cut(s)	50, 95
BseLI	CCNNNNNNNGG	1 cut(s)	225
BseMI	GCAATG	1 cut(s)	172
BseMII	CTCAG	1 cut(s)	122
BseNI	ACTGG	1 cut(s)	214
BseXI	GCAGC	2 cut(s)	229, 251
Bsh1285I	CGRYCG	1 cut(s)	211
BshFI	GGCC	1 cut(s)	93
BsiEI	CGRYCG	1 cut(s)	211
BsiSI	CCGG	2 cut(s)	175, 329
BslFI	GGGAC	3 cut(s)	58, 134, 157
BslI	CCNNNNNNNGG	1 cut(s)	225
BsmAI	GTCTC	1 cut(s)	106
BsmFI	GGGAC	3 cut(s)	58, 134, 157
BsnI	GGCC	1 cut(s)	93
Bso31I	GGTCTC	1 cut(s)	106
Bsp13I	TCCGGA	1 cut(s)	328
Bsp143I	GATC	1 cut(s)	348
BspACI	CCGC	1 cut(s)	211
BspANI	GGCC	1 cut(s)	93
BspCNI	CTCAG	1 cut(s)	123
BspEI	TCCGGA	1 cut(s)	328
BspLI	GGNNCC	2 cut(s)	145, 179
BspMI	ACCTGC	1 cut(s)	216
BspPI	GGATC	1 cut(s)	343
BspTNI	GGTCTC	1 cut(s)	106
BsrDI	GCAATG	1 cut(s)	172
BsrI	ACTGG	1 cut(s)	214
BssMI	GATC	1 cut(s)	348
BssSI	CACGAG	2 cut(s)	41, 275
Bst2BI	CACGAG	2 cut(s)	41, 275
Bst2UI	CCWGG	2 cut(s)	50, 95
Bst4CI	ACNGT	2 cut(s)	66, 148
BstDEI	CTNAG	3 cut(s)	131, 182, 195
BstHHI	GCGC	1 cut(s)	62
BstKTI	GATC	1 cut(s)	351
BstMAI	GTCTC	1 cut(s)	106
BstMBI	GATC	1 cut(s)	348
BstMCI	CGRYCG	1 cut(s)	211
BstMWI	GCNNNNNNNGC	2 cut(s)	68, 77
BstNI	CCWGG	2 cut(s)	50, 95
BstNSI	RCATGY	1 cut(s)	90
BstSCI	CCNGG	2 cut(s)	48, 93
BstSFI	CTRYAG	1 cut(s)	12
BstV1I	GCAGC	2 cut(s)	229, 251
BstV2I	GAAGAC	1 cut(s)	278
BstX2I	RGATCY	1 cut(s)	348
BstYI	RGATCY	1 cut(s)	348
Bsu36I	CCTNAGG	1 cut(s)	131
BsuRI	GGCC	1 cut(s)	93
BveI	ACCTGC	1 cut(s)	216
CfoI	GCGC	1 cut(s)	62
Cfr13I	GGNCC	2 cut(s)	37, 144
CseI	GACGC	1 cut(s)	60
CviAII	CATG	3 cut(s)	87, 117, 159
CviJI	RGCY	8 cut(s)	17, 29, 93, 194, 242, 268, 281, 310
CviKI_1	RGCY	8 cut(s)	17, 29, 93, 194, 242, 268, 281, 310
DdeI	CTNAG	3 cut(s)	131, 182, 195
DpnI	GATC	1 cut(s)	350
DpnII	GATC	1 cut(s)	348
DriI	GACNNNNNGTC	1 cut(s)	214
EaeI	YGGCCR	1 cut(s)	91
Eam1105I	GACNNNNNGTC	1 cut(s)	214
Eco31I	GGTCTC	1 cut(s)	106
Eco47I	GGWCC	2 cut(s)	37, 144
Eco81I	CCTNAGG	1 cut(s)	131
EcoRII	CCWGG	2 cut(s)	48, 93
EcoT22I	ATGCAT	1 cut(s)	122
FaeI	CATG	3 cut(s)	90, 120, 162
FaiI	YATR	5 cut(s)	14, 88, 118, 122, 160
FaqI	GGGAC	3 cut(s)	58, 134, 157
FatI	CATG	3 cut(s)	86, 116, 158
Fnu4HI	GCNGC	2 cut(s)	240, 243
Fsp4HI	GCNGC	2 cut(s)	240, 243
FspBI	CTAG	1 cut(s)	21
GlaI	GCGC	1 cut(s)	61
GluI	GCNGC	2 cut(s)	240, 243
HaeIII	GGCC	1 cut(s)	93
HapII	CCGG	2 cut(s)	175, 329
HgaI	GACGC	1 cut(s)	60
HhaI	GCGC	1 cut(s)	62
Hin1II	CATG	3 cut(s)	90, 120, 162
Hin6I	GCGC	1 cut(s)	60
HinP1I	GCGC	1 cut(s)	60
HindIII	AAGCTT	1 cut(s)	266
HinfI	GANTC	2 cut(s)	171, 261
HpaII	CCGG	2 cut(s)	175, 329
Hpy166II	GTNNAC	1 cut(s)	260
Hpy188I	TCNGA	2 cut(s)	103, 296
Hpy188III	TCNNGA	1 cut(s)	329
Hpy8I	GTNNAC	1 cut(s)	260
HpyCH4III	ACNGT	2 cut(s)	66, 148
HpyCH4V	TGCA	5 cut(s)	120, 155, 165, 225, 239
HpyF10VI	GCNNNNNNNGC	2 cut(s)	68, 77
HpyF3I	CTNAG	3 cut(s)	131, 182, 195
Hsp92II	CATG	3 cut(s)	90, 120, 162
HspAI	GCGC	1 cut(s)	60
Kpn2I	TCCGGA	1 cut(s)	328
Kzo9I	GATC	1 cut(s)	348
Lsp1109I	GCAGC	2 cut(s)	229, 251
LweI	GCATC	1 cut(s)	164
MaeI	CTAG	1 cut(s)	21
MaeIII	GTNAC	2 cut(s)	82, 341
MalI	GATC	1 cut(s)	350
MboI	GATC	1 cut(s)	348
MboII	GAAGA	1 cut(s)	278
MfeI	CAATTG	2 cut(s)	253, 337
MflI	RGATCY	1 cut(s)	348
MlsI	TGGCCA	1 cut(s)	93
MluCI	AATT	3 cut(s)	123, 253, 337
MluNI	TGGCCA	1 cut(s)	93
MlyI	GAGTC	2 cut(s)	180, 255
MnlI	CCTC	4 cut(s)	28, 50, 126, 284
Mox20I	TGGCCA	1 cut(s)	93
Mph1103I	ATGCAT	1 cut(s)	122
MroI	TCCGGA	1 cut(s)	328
MscI	TGGCCA	1 cut(s)	93
MseI	TTAA	1 cut(s)	270
Msp20I	TGGCCA	1 cut(s)	93
MspA1I	CMGCKG	1 cut(s)	242
MspI	CCGG	2 cut(s)	175, 329
MspR9I	CCNGG	2 cut(s)	50, 95
MunI	CAATTG	2 cut(s)	253, 337
MvaI	CCWGG	2 cut(s)	50, 95
MwoI	GCNNNNNNNGC	2 cut(s)	68, 77
NdeII	GATC	1 cut(s)	348
NlaIII	CATG	3 cut(s)	90, 120, 162
NlaIV	GGNNCC	2 cut(s)	145, 179
NmeAIII	GCCGAG	1 cut(s)	170
NmuCI	GTSAC	2 cut(s)	82, 341
NsiI	ATGCAT	1 cut(s)	122
NspI	RCATGY	1 cut(s)	90
PaqCI	CACCTGC	1 cut(s)	216
PciI	ACATGT	1 cut(s)	86
PcsI	WCGNNNNNNNCGW	1 cut(s)	39
PkrI	GCNGC	2 cut(s)	241, 244
PleI	GAGTC	2 cut(s)	179, 255
PpsI	GAGTC	2 cut(s)	179, 255
PscI	ACATGT	1 cut(s)	86
Psp6I	CCWGG	2 cut(s)	48, 93
PspGI	CCWGG	2 cut(s)	48, 93
PspN4I	GGNNCC	2 cut(s)	145, 179
PspPI	GGNCC	2 cut(s)	37, 144
PsuI	RGATCY	1 cut(s)	348
PvuII	CAGCTG	1 cut(s)	242
SaqAI	TTAA	1 cut(s)	270
SatI	GCNGC	2 cut(s)	240, 243
Sau3AI	GATC	1 cut(s)	348
Sau96I	GGNCC	2 cut(s)	37, 144
SchI	GAGTC	2 cut(s)	180, 255
ScrFI	CCNGG	2 cut(s)	50, 95
SetI	ASST	7 cut(s)	26, 99, 132, 230, 244, 270, 276
SfaNI	GCATC	1 cut(s)	164
SfcI	CTRYAG	1 cut(s)	12
SinI	GGWCC	2 cut(s)	37, 144
SmlI	CTYRAG	1 cut(s)	263
SmoI	CTYRAG	1 cut(s)	263
Sse9I	AATT	3 cut(s)	123, 253, 337
SsiI	CCGC	1 cut(s)	211
SspMI	CTAG	1 cut(s)	21
StyD4I	CCNGG	2 cut(s)	48, 93
TaaI	ACNGT	2 cut(s)	66, 148
TaqI	TCGA	2 cut(s)	207, 247
TasI	AATT	3 cut(s)	123, 253, 337
Tru1I	TTAA	1 cut(s)	270
Tru9I	TTAA	1 cut(s)	270
TseFI	GTSAC	2 cut(s)	82, 341
TseI	GCWGC	2 cut(s)	239, 242
Tsp45I	GTSAC	2 cut(s)	82, 341
TspGWI	ACGGA	1 cut(s)	208
VpaK11BI	GGWCC	2 cut(s)	37, 144
XceI	RCATGY	1 cut(s)	90
XspI	CTAG	1 cut(s)	21
Zsp2I	ATGCAT	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.