Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_6g09870 |
| malus_domestica | MD04G1174700.v1.1 |
| prunus_persica | Prupe.6G293600_v2.0.a1 |
| pyrus_communis | pycom04g15410 |
| rosa_chinensis | RchiOBHm_Chr3g0460471 |
| rosa_laevigata | RLG00000025002 RLG00000025008 |
| rosa_multiflora | Rmu_co8379257.1_g000001 Rmu_sc0004267.1_g000007 |
| rosa_roxburghii | Rroxscaffold_6G00419450 |
| rosa_rugosa | Rorug03G0042900 |
| rosa_samantha | Rh3AG101000 Rh3BG105000 Rh3CG106800 Rh3DG106300 |
| rosa_wichuraiana | Rw3G008590 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 1065, 1440 |
| Acc36I | ACCTGC | 1 cut(s) | 259 |
| AccII | CGCG | 1 cut(s) | 1505 |
| AciI | CCGC | 2 cut(s) | 1468, 1505 |
| AclWI | GGATC | 1 cut(s) | 1234 |
| AcsI | RAATTY | 2 cut(s) | 371, 598 |
| AfaI | GTAC | 2 cut(s) | 273, 1225 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 944 |
| AflII | CTTAAG | 1 cut(s) | 1055 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1190, 1222 |
| AleI | CACNNNNGTG | 1 cut(s) | 118 |
| AluBI | AGCT | 8 cut(s) | 238, 257, 299, 449, 632, 800, 863, 1277 |
| AluI | AGCT | 8 cut(s) | 238, 257, 299, 449, 632, 800, 863, 1277 |
| Alw21I | GWGCWC | 1 cut(s) | 125 |
| Alw26I | GTCTC | 2 cut(s) | 60, 308 |
| AlwI | GGATC | 1 cut(s) | 1234 |
| AoxI | GGCC | 1 cut(s) | 935 |
| ApeKI | GCWGC | 3 cut(s) | 575, 1274, 1291 |
| ApoI | RAATTY | 2 cut(s) | 371, 598 |
| AspLEI | GCGC | 2 cut(s) | 1487, 1505 |
| AsuHPI | GGTGA | 3 cut(s) | 1308, 1321, 1384 |
| AsuII | TTCGAA | 1 cut(s) | 1164 |
| Bbv12I | GWGCWC | 1 cut(s) | 125 |
| BbvI | GCAGC | 3 cut(s) | 562, 1286, 1303 |
| BccI | CCATC | 7 cut(s) | 73, 79, 341, 491, 803, 1066, 1091 |
| BcoDI | GTCTC | 2 cut(s) | 60, 308 |
| BfaI | CTAG | 3 cut(s) | 239, 258, 1221 |
| BfoI | RGCGCY | 1 cut(s) | 1488 |
| BfrI | CTTAAG | 1 cut(s) | 1055 |
| BfuAI | ACCTGC | 1 cut(s) | 259 |
| BisI | GCNGC | 4 cut(s) | 576, 1275, 1292, 1506 |
| BlsI | GCNGC | 4 cut(s) | 577, 1276, 1293, 1507 |
| BmiI | GGNNCC | 2 cut(s) | 145, 1423 |
| BmsI | GCATC | 5 cut(s) | 6, 724, 757, 1159, 1407 |
| Bpu14I | TTCGAA | 1 cut(s) | 1164 |
| BsaBI | GATNNNNATC | 1 cut(s) | 755 |
| BsaJI | CCNNGG | 2 cut(s) | 1319, 1480 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 944 |
| Bse1I | ACTGG | 3 cut(s) | 145, 187, 219 |
| Bse3DI | GCAATG | 2 cut(s) | 417, 849 |
| Bse8I | GATNNNNATC | 1 cut(s) | 755 |
| BseDI | CCNNGG | 2 cut(s) | 1319, 1480 |
| BseGI | GGATG | 3 cut(s) | 526, 739, 814 |
| BseJI | GATNNNNATC | 1 cut(s) | 755 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 944 |
| BseMI | GCAATG | 2 cut(s) | 417, 849 |
| BseMII | CTCAG | 2 cut(s) | 846, 1368 |
| BseNI | ACTGG | 3 cut(s) | 145, 187, 219 |
| BseXI | GCAGC | 3 cut(s) | 562, 1286, 1303 |
| Bsh1236I | CGCG | 1 cut(s) | 1505 |
| BshFI | GGCC | 1 cut(s) | 937 |
| BsiHKAI | GWGCWC | 1 cut(s) | 125 |
| BslFI | GGGAC | 1 cut(s) | 960 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 944 |
| BsmAI | GTCTC | 2 cut(s) | 60, 308 |
| BsmBI | CGTCTC | 1 cut(s) | 308 |
| BsmFI | GGGAC | 1 cut(s) | 960 |
| BsnI | GGCC | 1 cut(s) | 937 |
| Bsp119I | TTCGAA | 1 cut(s) | 1164 |
| Bsp1286I | GDGCHC | 1 cut(s) | 125 |
| Bsp143I | GATC | 3 cut(s) | 514, 1139, 1239 |
| Bsp19I | CCATGG | 1 cut(s) | 1319 |
| BspACI | CCGC | 2 cut(s) | 1468, 1505 |
| BspANI | GGCC | 1 cut(s) | 937 |
| BspCNI | CTCAG | 2 cut(s) | 845, 1369 |
| BspFNI | CGCG | 1 cut(s) | 1505 |
| BspHI | TCATGA | 1 cut(s) | 486 |
| BspLI | GGNNCC | 2 cut(s) | 145, 1423 |
| BspMI | ACCTGC | 1 cut(s) | 259 |
| BspPI | GGATC | 1 cut(s) | 1234 |
| BspT104I | TTCGAA | 1 cut(s) | 1164 |
| BspTI | CTTAAG | 1 cut(s) | 1055 |
| BsrDI | GCAATG | 2 cut(s) | 417, 849 |
| BsrI | ACTGG | 3 cut(s) | 145, 187, 219 |
| BssECI | CCNNGG | 2 cut(s) | 1319, 1480 |
| BssMI | GATC | 3 cut(s) | 514, 1139, 1239 |
| BssT1I | CCWWGG | 2 cut(s) | 1319, 1480 |
| Bst4CI | ACNGT | 4 cut(s) | 364, 589, 679, 1386 |
| Bst6I | CTCTTC | 2 cut(s) | 1166, 1508 |
| BstAFI | CTTAAG | 1 cut(s) | 1055 |
| BstBI | TTCGAA | 1 cut(s) | 1164 |
| BstC8I | GCNNGC | 3 cut(s) | 212, 671, 935 |
| BstDEI | CTNAG | 2 cut(s) | 832, 1377 |
| BstDSI | CCRYGG | 1 cut(s) | 1319 |
| BstF5I | GGATG | 3 cut(s) | 526, 739, 814 |
| BstFNI | CGCG | 1 cut(s) | 1505 |
| BstH2I | RGCGCY | 1 cut(s) | 1488 |
| BstHHI | GCGC | 2 cut(s) | 1487, 1505 |
| BstKTI | GATC | 3 cut(s) | 517, 1142, 1242 |
| BstMAI | GTCTC | 2 cut(s) | 60, 308 |
| BstMBI | GATC | 3 cut(s) | 514, 1139, 1239 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 930 |
| BstNSI | RCATGY | 1 cut(s) | 113 |
| BstUI | CGCG | 1 cut(s) | 1505 |
| BstV1I | GCAGC | 3 cut(s) | 562, 1286, 1303 |
| BsuRI | GGCC | 1 cut(s) | 937 |
| BtgI | CCRYGG | 1 cut(s) | 1319 |
| BtsCI | GGATG | 3 cut(s) | 526, 739, 814 |
| BtsIMutI | CAGTG | 4 cut(s) | 138, 226, 585, 1382 |
| BveI | ACCTGC | 1 cut(s) | 259 |
| Cac8I | GCNNGC | 3 cut(s) | 212, 671, 935 |
| CciI | TCATGA | 1 cut(s) | 486 |
| CfoI | GCGC | 2 cut(s) | 1487, 1505 |
| Csp6I | GTAC | 2 cut(s) | 272, 1224 |
| CviQI | GTAC | 2 cut(s) | 272, 1224 |
| DdeI | CTNAG | 2 cut(s) | 832, 1377 |
| DpnI | GATC | 3 cut(s) | 516, 1141, 1241 |
| DpnII | GATC | 3 cut(s) | 514, 1139, 1239 |
| Eam1104I | CTCTTC | 2 cut(s) | 1166, 1508 |
| EarI | CTCTTC | 2 cut(s) | 1166, 1508 |
| Eco130I | CCWWGG | 2 cut(s) | 1319, 1480 |
| EcoRI | GAATTC | 1 cut(s) | 371 |
| EcoT14I | CCWWGG | 2 cut(s) | 1319, 1480 |
| EcoT22I | ATGCAT | 1 cut(s) | 739 |
| ErhI | CCWWGG | 2 cut(s) | 1319, 1480 |
| Esp3I | CGTCTC | 1 cut(s) | 308 |
| FaqI | GGGAC | 1 cut(s) | 960 |
| FauI | CCCGC | 1 cut(s) | 1461 |
| FauNDI | CATATG | 3 cut(s) | 546, 739, 1228 |
| Fnu4HI | GCNGC | 4 cut(s) | 576, 1275, 1292, 1506 |
| FokI | GGATG | 3 cut(s) | 533, 746, 821 |
| Fsp4HI | GCNGC | 4 cut(s) | 576, 1275, 1292, 1506 |
| FspBI | CTAG | 3 cut(s) | 239, 258, 1221 |
| GlaI | GCGC | 2 cut(s) | 1486, 1504 |
| GluI | GCNGC | 4 cut(s) | 576, 1275, 1292, 1506 |
| HaeII | RGCGCY | 1 cut(s) | 1488 |
| HaeIII | GGCC | 1 cut(s) | 937 |
| HhaI | GCGC | 2 cut(s) | 1487, 1505 |
| Hin6I | GCGC | 2 cut(s) | 1485, 1503 |
| HinP1I | GCGC | 2 cut(s) | 1485, 1503 |
| HincII | GTYRAC | 1 cut(s) | 879 |
| HindII | GTYRAC | 1 cut(s) | 879 |
| HindIII | AAGCTT | 1 cut(s) | 297 |
| HinfI | GANTC | 4 cut(s) | 467, 756, 1450, 1462 |
| HphI | GGTGA | 3 cut(s) | 1308, 1321, 1384 |
| Hpy166II | GTNNAC | 1 cut(s) | 879 |
| Hpy188I | TCNGA | 5 cut(s) | 360, 370, 594, 684, 835 |
| Hpy188III | TCNNGA | 3 cut(s) | 487, 518, 760 |
| Hpy8I | GTNNAC | 1 cut(s) | 879 |
| HpyAV | CCTTC | 6 cut(s) | 30, 49, 697, 923, 1141, 1403 |
| HpyCH4III | ACNGT | 4 cut(s) | 364, 589, 679, 1386 |
| HpyCH4IV | ACGT | 1 cut(s) | 115 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 930 |
| HpyF3I | CTNAG | 2 cut(s) | 832, 1377 |
| HpySE526I | ACGT | 1 cut(s) | 115 |
| HspAI | GCGC | 2 cut(s) | 1485, 1503 |
| Kzo9I | GATC | 3 cut(s) | 514, 1139, 1239 |
| Lsp1109I | GCAGC | 3 cut(s) | 562, 1286, 1303 |
| LweI | GCATC | 5 cut(s) | 6, 724, 757, 1159, 1407 |
| MaeI | CTAG | 3 cut(s) | 239, 258, 1221 |
| MaeII | ACGT | 1 cut(s) | 115 |
| MaeIII | GTNAC | 3 cut(s) | 497, 892, 1372 |
| MalI | GATC | 3 cut(s) | 516, 1141, 1241 |
| MboI | GATC | 3 cut(s) | 514, 1139, 1239 |
| MboII | GAAGA | 6 cut(s) | 15, 239, 1153, 1178, 1276, 1525 |
| MfeI | CAATTG | 1 cut(s) | 691 |
| MhlI | GDGCHC | 1 cut(s) | 125 |
| MluCI | AATT | 9 cut(s) | 291, 324, 371, 598, 660, 691, 848, 1344, 1524 |
| Mph1103I | ATGCAT | 1 cut(s) | 739 |
| MseI | TTAA | 9 cut(s) | 294, 435, 912, 951, 959, 1028, 1056, 1335, 1347 |
| MslI | CAYNNNNRTG | 1 cut(s) | 118 |
| MspA1I | CMGCKG | 2 cut(s) | 800, 1277 |
| MspCI | CTTAAG | 1 cut(s) | 1055 |
| MunI | CAATTG | 1 cut(s) | 691 |
| MvnI | CGCG | 1 cut(s) | 1505 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 930 |
| NcoI | CCATGG | 1 cut(s) | 1319 |
| NdeI | CATATG | 3 cut(s) | 546, 739, 1228 |
| NdeII | GATC | 3 cut(s) | 514, 1139, 1239 |
| NlaIV | GGNNCC | 2 cut(s) | 145, 1423 |
| NmuCI | GTSAC | 2 cut(s) | 892, 1372 |
| NsiI | ATGCAT | 1 cut(s) | 739 |
| NspI | RCATGY | 1 cut(s) | 113 |
| NspV | TTCGAA | 1 cut(s) | 1164 |
| OliI | CACNNNNGTG | 1 cut(s) | 118 |
| PagI | TCATGA | 1 cut(s) | 486 |
| PfeI | GAWTC | 4 cut(s) | 467, 756, 1450, 1462 |
| PkrI | GCNGC | 4 cut(s) | 577, 1276, 1293, 1507 |
| PsiI | TTATAA | 2 cut(s) | 1065, 1440 |
| PspN4I | GGNNCC | 2 cut(s) | 145, 1423 |
| PvuII | CAGCTG | 2 cut(s) | 800, 1277 |
| RsaI | GTAC | 2 cut(s) | 273, 1225 |
| RsaNI | GTAC | 2 cut(s) | 272, 1224 |
| RseI | CAYNNNNRTG | 1 cut(s) | 118 |
| SaqAI | TTAA | 9 cut(s) | 294, 435, 912, 951, 959, 1028, 1056, 1335, 1347 |
| SatI | GCNGC | 4 cut(s) | 576, 1275, 1292, 1506 |
| Sau3AI | GATC | 3 cut(s) | 514, 1139, 1239 |
| SduI | GDGCHC | 1 cut(s) | 125 |
| SfaNI | GCATC | 5 cut(s) | 6, 724, 757, 1159, 1407 |
| SfuI | TTCGAA | 1 cut(s) | 1164 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 118 |
| SmlI | CTYRAG | 1 cut(s) | 1055 |
| SmoI | CTYRAG | 1 cut(s) | 1055 |
| Sse9I | AATT | 9 cut(s) | 291, 324, 371, 598, 660, 691, 848, 1344, 1524 |
| SsiI | CCGC | 2 cut(s) | 1468, 1505 |
| SspMI | CTAG | 3 cut(s) | 239, 258, 1221 |
| StyI | CCWWGG | 2 cut(s) | 1319, 1480 |
| TaaI | ACNGT | 4 cut(s) | 364, 589, 679, 1386 |
| TaiI | ACGT | 1 cut(s) | 118 |
| TaqI | TCGA | 3 cut(s) | 225, 1142, 1164 |
| TasI | AATT | 9 cut(s) | 291, 324, 371, 598, 660, 691, 848, 1344, 1524 |
| TatI | WGTACW | 1 cut(s) | 1223 |
| TauI | GCSGC | 1 cut(s) | 1508 |
| TfiI | GAWTC | 4 cut(s) | 467, 756, 1450, 1462 |
| Tru1I | TTAA | 9 cut(s) | 294, 435, 912, 951, 959, 1028, 1056, 1335, 1347 |
| Tru9I | TTAA | 9 cut(s) | 294, 435, 912, 951, 959, 1028, 1056, 1335, 1347 |
| TscAI | CASTG | 4 cut(s) | 145, 226, 592, 1389 |
| TseFI | GTSAC | 2 cut(s) | 892, 1372 |
| TseI | GCWGC | 3 cut(s) | 575, 1274, 1291 |
| Tsp45I | GTSAC | 2 cut(s) | 892, 1372 |
| TspRI | CASTG | 4 cut(s) | 145, 226, 592, 1389 |
| Vha464I | CTTAAG | 1 cut(s) | 1055 |
| XapI | RAATTY | 2 cut(s) | 371, 598 |
| XceI | RCATGY | 1 cut(s) | 113 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 78 |
| XspI | CTAG | 3 cut(s) | 239, 258, 1221 |
| Zsp2I | ATGCAT | 1 cut(s) | 739 |