Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_6g09870 |
| malus_domestica | MD04G1174700.v1.1 |
| prunus_persica | Prupe.6G293600_v2.0.a1 |
| pyrus_communis | pycom04g15410 |
| rosa_chinensis | RchiOBHm_Chr3g0460471 |
| rosa_laevigata | RLG00000025002 RLG00000025008 |
| rosa_multiflora | Rmu_co8379257.1_g000001 Rmu_sc0004267.1_g000007 |
| rosa_roxburghii | Rroxscaffold_6G00419450 |
| rosa_rugosa | Rorug03G0042900 |
| rosa_samantha | Rh3AG101000 Rh3BG105000 Rh3CG106800 Rh3DG106300 |
| rosa_wichuraiana | Rw3G008590 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 640 |
| Acc36I | ACCTGC | 1 cut(s) | 640 |
| AccB1I | GGYRCC | 2 cut(s) | 441, 844 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 372, 934, 2031 |
| AccBSI | CCGCTC | 1 cut(s) | 1584 |
| AccII | CGCG | 1 cut(s) | 1889 |
| AccIII | TCCGGA | 1 cut(s) | 1267 |
| AciI | CCGC | 8 cut(s) | 215, 236, 888, 1436, 1584, 1889, 1978, 2138 |
| AclWI | GGATC | 3 cut(s) | 950, 1618, 1715 |
| AcsI | RAATTY | 5 cut(s) | 705, 752, 2050, 2111, 2149 |
| AcuI | CTGAAG | 1 cut(s) | 1106 |
| AdeI | CACNNNGTG | 2 cut(s) | 934, 1564 |
| AfaI | GTAC | 2 cut(s) | 1042, 1609 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 349, 372, 934, 1328, 1329, 1937, 2031, 2089 |
| AflIII | ACRYGT | 1 cut(s) | 2044 |
| AgeI | ACCGGT | 1 cut(s) | 1997 |
| AjiI | CACGTC | 1 cut(s) | 263 |
| AjnI | CCWGG | 3 cut(s) | 129, 365, 2030 |
| AluBI | AGCT | 9 cut(s) | 64, 81, 283, 514, 545, 680, 810, 833, 1281 |
| AluI | AGCT | 9 cut(s) | 64, 81, 283, 514, 545, 680, 810, 833, 1281 |
| Alw21I | GWGCWC | 1 cut(s) | 83 |
| Alw26I | GTCTC | 4 cut(s) | 155, 253, 1247, 2118 |
| AlwI | GGATC | 3 cut(s) | 950, 1618, 1715 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 959 |
| Ama87I | CYCGRG | 1 cut(s) | 65 |
| Aor13HI | TCCGGA | 1 cut(s) | 1267 |
| AoxI | GGCC | 5 cut(s) | 909, 1319, 1615, 1735, 2015 |
| ApeKI | GCWGC | 5 cut(s) | 139, 514, 527, 1399, 1675 |
| ApoI | RAATTY | 5 cut(s) | 705, 752, 2050, 2111, 2149 |
| AseI | ATTAAT | 1 cut(s) | 2075 |
| AsiGI | ACCGGT | 1 cut(s) | 1997 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 380 |
| AspLEI | GCGC | 1 cut(s) | 1889 |
| AspS9I | GGNCC | 5 cut(s) | 203, 418, 909, 1320, 1666 |
| AsuC2I | CCSGG | 3 cut(s) | 350, 1258, 1932 |
| AsuHPI | GGTGA | 5 cut(s) | 225, 1045, 1288, 1705, 1951 |
| AsuII | TTCGAA | 3 cut(s) | 1687, 1761, 1791 |
| AvaI | CYCGRG | 1 cut(s) | 65 |
| AvaII | GGWCC | 3 cut(s) | 203, 418, 1666 |
| BaeGI | GKGCMC | 1 cut(s) | 446 |
| BanI | GGYRCC | 2 cut(s) | 441, 844 |
| BanII | GRGCYC | 2 cut(s) | 83, 1335 |
| BauI | CACGAG | 2 cut(s) | 1238, 1915 |
| BbsI | GAAGAC | 2 cut(s) | 383, 2047 |
| Bbv12I | GWGCWC | 1 cut(s) | 83 |
| BbvCI | CCTCAGC | 1 cut(s) | 541 |
| BbvI | GCAGC | 5 cut(s) | 126, 501, 539, 1386, 1687 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 1216, 1250, 1667, 1701, 1771, 1805 |
| BciT130I | CCWGG | 3 cut(s) | 131, 367, 2032 |
| BciVI | GTATCC | 2 cut(s) | 1295, 1952 |
| BclI | TGATCA | 1 cut(s) | 297 |
| BcnI | CCSGG | 3 cut(s) | 350, 1258, 1932 |
| BcoDI | GTCTC | 4 cut(s) | 155, 253, 1247, 2118 |
| BfmI | CTRYAG | 1 cut(s) | 490 |
| BfuAI | ACCTGC | 1 cut(s) | 640 |
| BfuI | GTATCC | 2 cut(s) | 1295, 1952 |
| BglII | AGATCT | 1 cut(s) | 389 |
| BisI | GCNGC | 6 cut(s) | 140, 515, 528, 1400, 1676, 1890 |
| BlsI | GCNGC | 6 cut(s) | 141, 516, 529, 1401, 1677, 1891 |
| Bme1390I | CCNGG | 6 cut(s) | 131, 350, 367, 1258, 1932, 2032 |
| Bme18I | GGWCC | 3 cut(s) | 203, 418, 1666 |
| BmeT110I | CYCGRG | 1 cut(s) | 65 |
| BmgBI | CACGTC | 1 cut(s) | 263 |
| BmgT120I | GGNCC | 5 cut(s) | 203, 418, 909, 1320, 1666 |
| BmiI | GGNNCC | 3 cut(s) | 443, 846, 910 |
| BmrFI | CCNGG | 6 cut(s) | 131, 350, 367, 1258, 1932, 2032 |
| BmsI | GCATC | 7 cut(s) | 343, 420, 1108, 1389, 1543, 1591, 1791 |
| BpiI | GAAGAC | 2 cut(s) | 383, 2047 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 92, 124, 1893, 1925 |
| BpmI | CTGGAG | 1 cut(s) | 386 |
| Bpu10I | CCTNAGC | 1 cut(s) | 541 |
| Bpu14I | TTCGAA | 3 cut(s) | 1687, 1761, 1791 |
| BpuEI | CTTGAG | 3 cut(s) | 183, 826, 2091 |
| BpuMI | CCSGG | 3 cut(s) | 350, 1258, 1932 |
| BsaAI | YACGTR | 1 cut(s) | 1611 |
| BsaI | GGTCTC | 1 cut(s) | 1247 |
| BsaJI | CCNNGG | 6 cut(s) | 365, 414, 1323, 1703, 1864, 2031 |
| BsaWI | WCCGGW | 2 cut(s) | 1267, 1997 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 65, 95, 1244, 1274 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 349, 372, 934, 1328, 1329, 1937, 2031, 2089 |
| Bse118I | RCCGGY | 2 cut(s) | 160, 1997 |
| Bse1I | ACTGG | 2 cut(s) | 1809, 1948 |
| Bse3DI | GCAATG | 2 cut(s) | 141, 2139 |
| BseAI | TCCGGA | 1 cut(s) | 1267 |
| BseBI | CCWGG | 3 cut(s) | 131, 367, 2032 |
| BseDI | CCNNGG | 6 cut(s) | 365, 414, 1323, 1703, 1864, 2031 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 349, 372, 934, 1328, 1329, 1937, 2031, 2089 |
| BseMI | GCAATG | 2 cut(s) | 141, 2139 |
| BseMII | CTCAG | 4 cut(s) | 278, 555, 1924, 2111 |
| BseNI | ACTGG | 2 cut(s) | 1809, 1948 |
| BseRI | GAGGAG | 3 cut(s) | 1466, 1496, 2105 |
| BseSI | GKGCMC | 1 cut(s) | 446 |
| BseXI | GCAGC | 5 cut(s) | 126, 501, 539, 1386, 1687 |
| BseYI | CCCAGC | 2 cut(s) | 445, 634 |
| BsgI | GTGCAG | 3 cut(s) | 439, 674, 1085 |
| Bsh1236I | CGCG | 1 cut(s) | 1889 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1217 |
| BshFI | GGCC | 5 cut(s) | 911, 1321, 1617, 1737, 2017 |
| BshNI | GGYRCC | 2 cut(s) | 441, 844 |
| BshTI | ACCGGT | 1 cut(s) | 1997 |
| BsiEI | CGRYCG | 1 cut(s) | 1217 |
| BsiHKAI | GWGCWC | 1 cut(s) | 83 |
| BsiHKCI | CYCGRG | 1 cut(s) | 65 |
| BsiSI | CCGG | 6 cut(s) | 161, 350, 1257, 1268, 1932, 1998 |
| BslFI | GGGAC | 2 cut(s) | 83, 1994 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 349, 372, 934, 1328, 1329, 1937, 2031, 2089 |
| BsmAI | GTCTC | 4 cut(s) | 155, 253, 1247, 2118 |
| BsmBI | CGTCTC | 2 cut(s) | 253, 2118 |
| BsmFI | GGGAC | 2 cut(s) | 83, 1994 |
| BsmI | GAATGC | 5 cut(s) | 986, 1368, 1438, 1588, 1696 |
| BsnI | GGCC | 5 cut(s) | 911, 1321, 1617, 1737, 2017 |
| Bso31I | GGTCTC | 1 cut(s) | 1247 |
| BsoBI | CYCGRG | 1 cut(s) | 65 |
| Bsp119I | TTCGAA | 3 cut(s) | 1687, 1761, 1791 |
| Bsp1286I | GDGCHC | 3 cut(s) | 83, 446, 1335 |
| Bsp13I | TCCGGA | 1 cut(s) | 1267 |
| Bsp143I | GATC | 8 cut(s) | 297, 389, 898, 955, 1214, 1523, 1623, 1707 |
| Bsp19I | CCATGG | 3 cut(s) | 414, 1323, 1703 |
| BspACI | CCGC | 8 cut(s) | 215, 236, 888, 1436, 1584, 1889, 1978, 2138 |
| BspANI | GGCC | 5 cut(s) | 911, 1321, 1617, 1737, 2017 |
| BspCNI | CTCAG | 4 cut(s) | 279, 554, 1923, 2112 |
| BspEI | TCCGGA | 1 cut(s) | 1267 |
| BspFNI | CGCG | 1 cut(s) | 1889 |
| BspLI | GGNNCC | 3 cut(s) | 443, 846, 910 |
| BspMAI | CTGCAG | 1 cut(s) | 494 |
| BspMI | ACCTGC | 1 cut(s) | 640 |
| BspPI | GGATC | 3 cut(s) | 950, 1618, 1715 |
| BspQI | GCTCTTC | 1 cut(s) | 783 |
| BspT104I | TTCGAA | 3 cut(s) | 1687, 1761, 1791 |
| BspT107I | GGYRCC | 2 cut(s) | 441, 844 |
| BspTNI | GGTCTC | 1 cut(s) | 1247 |
| BsrBI | CCGCTC | 1 cut(s) | 1584 |
| BsrDI | GCAATG | 2 cut(s) | 141, 2139 |
| BsrFI | RCCGGY | 2 cut(s) | 160, 1997 |
| BsrI | ACTGG | 2 cut(s) | 1809, 1948 |
| BssAI | RCCGGY | 2 cut(s) | 160, 1997 |
| BssECI | CCNNGG | 6 cut(s) | 365, 414, 1323, 1703, 1864, 2031 |
| BssMI | GATC | 8 cut(s) | 297, 389, 898, 955, 1214, 1523, 1623, 1707 |
| BssSI | CACGAG | 2 cut(s) | 1238, 1915 |
| BssT1I | CCWWGG | 3 cut(s) | 414, 1323, 1703 |
| Bst2BI | CACGAG | 2 cut(s) | 1238, 1915 |
| Bst2UI | CCWGG | 3 cut(s) | 131, 367, 2032 |
| Bst4CI | ACNGT | 7 cut(s) | 57, 745, 973, 1045, 1063, 1391, 2129 |
| Bst6I | CTCTTC | 3 cut(s) | 251, 783, 1892 |
| BstBAI | YACGTR | 1 cut(s) | 1611 |
| BstBI | TTCGAA | 3 cut(s) | 1687, 1761, 1791 |
| BstC8I | GCNNGC | 5 cut(s) | 162, 640, 1082, 1586, 2015 |
| BstDEI | CTNAG | 4 cut(s) | 287, 541, 1910, 2120 |
| BstDSI | CCRYGG | 3 cut(s) | 414, 1323, 1703 |
| BstFNI | CGCG | 1 cut(s) | 1889 |
| BstHHI | GCGC | 1 cut(s) | 1889 |
| BstKTI | GATC | 8 cut(s) | 300, 392, 901, 958, 1217, 1526, 1626, 1710 |
| BstMAI | GTCTC | 4 cut(s) | 155, 253, 1247, 2118 |
| BstMBI | GATC | 8 cut(s) | 297, 389, 898, 955, 1214, 1523, 1623, 1707 |
| BstMCI | CGRYCG | 1 cut(s) | 1217 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 17, 1063, 1585, 1884 |
| BstNI | CCWGG | 3 cut(s) | 131, 367, 2032 |
| BstNSI | RCATGY | 1 cut(s) | 2048 |
| BstSCI | CCNGG | 6 cut(s) | 129, 348, 365, 1256, 1930, 2030 |
| BstSFI | CTRYAG | 1 cut(s) | 490 |
| BstSLI | GKGCMC | 1 cut(s) | 446 |
| BstSNI | TACGTA | 1 cut(s) | 1611 |
| BstUI | CGCG | 1 cut(s) | 1889 |
| BstV1I | GCAGC | 5 cut(s) | 126, 501, 539, 1386, 1687 |
| BstV2I | GAAGAC | 2 cut(s) | 383, 2047 |
| BstX2I | RGATCY | 2 cut(s) | 389, 955 |
| BstYI | RGATCY | 2 cut(s) | 389, 955 |
| BsuI | GTATCC | 2 cut(s) | 1295, 1952 |
| BsuRI | GGCC | 5 cut(s) | 911, 1321, 1617, 1737, 2017 |
| BtgI | CCRYGG | 3 cut(s) | 414, 1323, 1703 |
| BtgZI | GCGATG | 3 cut(s) | 35, 1241, 1262 |
| BtrI | CACGTC | 1 cut(s) | 263 |
| BtsI | GCAGTG | 1 cut(s) | 1179 |
| BtsIMutI | CAGTG | 2 cut(s) | 1068, 1179 |
| BveI | ACCTGC | 1 cut(s) | 640 |
| Cac8I | GCNNGC | 5 cut(s) | 162, 640, 1082, 1586, 2015 |
| CaiI | CAGNNNCTG | 1 cut(s) | 959 |
| CfoI | GCGC | 1 cut(s) | 1889 |
| Cfr10I | RCCGGY | 2 cut(s) | 160, 1997 |
| Cfr13I | GGNCC | 5 cut(s) | 203, 418, 909, 1320, 1666 |
| CseI | GACGC | 1 cut(s) | 131 |
| Csp6I | GTAC | 2 cut(s) | 1041, 1608 |
| CspAI | ACCGGT | 1 cut(s) | 1997 |
| CviQI | GTAC | 2 cut(s) | 1041, 1608 |
| DdeI | CTNAG | 4 cut(s) | 287, 541, 1910, 2120 |
| DpnI | GATC | 8 cut(s) | 299, 391, 900, 957, 1216, 1525, 1625, 1709 |
| DpnII | GATC | 8 cut(s) | 297, 389, 898, 955, 1214, 1523, 1623, 1707 |
| DraIII | CACNNNGTG | 2 cut(s) | 934, 1564 |
| Eam1104I | CTCTTC | 3 cut(s) | 251, 783, 1892 |
| EarI | CTCTTC | 3 cut(s) | 251, 783, 1892 |
| EciI | GGCGGA | 1 cut(s) | 2153 |
| Ecl136II | GAGCTC | 1 cut(s) | 81 |
| Eco105I | TACGTA | 1 cut(s) | 1611 |
| Eco130I | CCWWGG | 3 cut(s) | 414, 1323, 1703 |
| Eco147I | AGGCCT | 1 cut(s) | 1737 |
| Eco24I | GRGCYC | 2 cut(s) | 83, 1335 |
| Eco31I | GGTCTC | 1 cut(s) | 1247 |
| Eco47I | GGWCC | 3 cut(s) | 203, 418, 1666 |
| Eco53kI | GAGCTC | 1 cut(s) | 81 |
| Eco57I | CTGAAG | 1 cut(s) | 1106 |
| Eco88I | CYCGRG | 1 cut(s) | 65 |
| EcoICRI | GAGCTC | 1 cut(s) | 81 |
| EcoRI | GAATTC | 1 cut(s) | 752 |
| EcoRII | CCWGG | 3 cut(s) | 129, 365, 2030 |
| EcoT14I | CCWWGG | 3 cut(s) | 414, 1323, 1703 |
| EcoT22I | ATGCAT | 1 cut(s) | 988 |
| EcoT38I | GRGCYC | 2 cut(s) | 83, 1335 |
| ErhI | CCWWGG | 3 cut(s) | 414, 1323, 1703 |
| Esp3I | CGTCTC | 2 cut(s) | 253, 2118 |
| FaqI | GGGAC | 2 cut(s) | 83, 1994 |
| FauI | CCCGC | 2 cut(s) | 1577, 1971 |
| FbaI | TGATCA | 1 cut(s) | 297 |
| Fnu4HI | GCNGC | 6 cut(s) | 140, 515, 528, 1400, 1676, 1890 |
| FriOI | GRGCYC | 2 cut(s) | 83, 1335 |
| Fsp4HI | GCNGC | 6 cut(s) | 140, 515, 528, 1400, 1676, 1890 |
| GlaI | GCGC | 1 cut(s) | 1888 |
| GluI | GCNGC | 6 cut(s) | 140, 515, 528, 1400, 1676, 1890 |
| GsaI | CCCAGC | 2 cut(s) | 449, 638 |
| GsuI | CTGGAG | 1 cut(s) | 386 |
| HaeIII | GGCC | 5 cut(s) | 911, 1321, 1617, 1737, 2017 |
| HapII | CCGG | 6 cut(s) | 161, 350, 1257, 1268, 1932, 1998 |
| HgaI | GACGC | 1 cut(s) | 131 |
| HhaI | GCGC | 1 cut(s) | 1889 |
| Hin6I | GCGC | 1 cut(s) | 1887 |
| HinP1I | GCGC | 1 cut(s) | 1887 |
| HindIII | AAGCTT | 1 cut(s) | 281 |
| HpaII | CCGG | 6 cut(s) | 161, 350, 1257, 1268, 1932, 1998 |
| HphI | GGTGA | 5 cut(s) | 225, 1045, 1288, 1705, 1951 |
| Hpy188III | TCNNGA | 9 cut(s) | 100, 871, 902, 1268, 1373, 1627, 1838, 2005, 2108 |
| Hpy99I | CGWCG | 2 cut(s) | 77, 147 |
| HpyCH4III | ACNGT | 7 cut(s) | 57, 745, 973, 1045, 1063, 1391, 2129 |
| HpyCH4IV | ACGT | 3 cut(s) | 262, 380, 1610 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 17, 1063, 1585, 1884 |
| HpyF3I | CTNAG | 4 cut(s) | 287, 541, 1910, 2120 |
| HpySE526I | ACGT | 3 cut(s) | 262, 380, 1610 |
| HspAI | GCGC | 1 cut(s) | 1887 |
| Kpn2I | TCCGGA | 1 cut(s) | 1267 |
| KroI | GCCGGC | 1 cut(s) | 160 |
| KroNI | GCCGGC | 1 cut(s) | 162 |
| Ksp22I | TGATCA | 1 cut(s) | 297 |
| Kzo9I | GATC | 8 cut(s) | 297, 389, 898, 955, 1214, 1523, 1623, 1707 |
| LguI | GCTCTTC | 1 cut(s) | 783 |
| LmnI | GCTCC | 1 cut(s) | 86 |
| Lsp1109I | GCAGC | 5 cut(s) | 126, 501, 539, 1386, 1687 |
| LweI | GCATC | 7 cut(s) | 343, 420, 1108, 1389, 1543, 1591, 1791 |
| MaeII | ACGT | 3 cut(s) | 262, 380, 1610 |
| MaeIII | GTNAC | 2 cut(s) | 881, 1711 |
| MalI | GATC | 8 cut(s) | 299, 391, 900, 957, 1216, 1525, 1625, 1709 |
| MbiI | CCGCTC | 1 cut(s) | 1584 |
| MboI | GATC | 8 cut(s) | 297, 389, 898, 955, 1214, 1523, 1623, 1707 |
| MfeI | CAATTG | 1 cut(s) | 1075 |
| MflI | RGATCY | 2 cut(s) | 389, 955 |
| MhlI | GDGCHC | 3 cut(s) | 83, 446, 1335 |
| MlyI | GAGTC | 3 cut(s) | 157, 1639, 1927 |
| MmeI | TCCRAC | 3 cut(s) | 125, 1174, 1499 |
| Mph1103I | ATGCAT | 1 cut(s) | 988 |
| MroI | TCCGGA | 1 cut(s) | 1267 |
| MroNI | GCCGGC | 1 cut(s) | 160 |
| MroXI | GAANNNNTTC | 1 cut(s) | 380 |
| MseI | TTAA | 6 cut(s) | 191, 276, 923, 1719, 2054, 2075 |
| MspA1I | CMGCKG | 1 cut(s) | 1978 |
| MspI | CCGG | 6 cut(s) | 161, 350, 1257, 1268, 1932, 1998 |
| MspR9I | CCNGG | 6 cut(s) | 131, 350, 367, 1258, 1932, 2032 |
| MunI | CAATTG | 1 cut(s) | 1075 |
| Mva1269I | GAATGC | 5 cut(s) | 986, 1368, 1438, 1588, 1696 |
| MvaI | CCWGG | 3 cut(s) | 131, 367, 2032 |
| MvnI | CGCG | 1 cut(s) | 1889 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 17, 1063, 1585, 1884 |
| NaeI | GCCGGC | 1 cut(s) | 162 |
| NciI | CCSGG | 3 cut(s) | 350, 1258, 1932 |
| NcoI | CCATGG | 3 cut(s) | 414, 1323, 1703 |
| NdeII | GATC | 8 cut(s) | 297, 389, 898, 955, 1214, 1523, 1623, 1707 |
| NgoMIV | GCCGGC | 1 cut(s) | 160 |
| NlaIV | GGNNCC | 3 cut(s) | 443, 846, 910 |
| NmeAIII | GCCGAG | 1 cut(s) | 645 |
| NmuCI | GTSAC | 1 cut(s) | 1711 |
| NsiI | ATGCAT | 1 cut(s) | 988 |
| NspI | RCATGY | 1 cut(s) | 2048 |
| NspV | TTCGAA | 3 cut(s) | 1687, 1761, 1791 |
| PaqCI | CACCTGC | 1 cut(s) | 640 |
| PceI | AGGCCT | 1 cut(s) | 1737 |
| PciI | ACATGT | 1 cut(s) | 2044 |
| PciSI | GCTCTTC | 1 cut(s) | 783 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 72, 96, 1223 |
| PctI | GAATGC | 5 cut(s) | 986, 1368, 1438, 1588, 1696 |
| PdiI | GCCGGC | 1 cut(s) | 162 |
| PdmI | GAANNNNTTC | 1 cut(s) | 380 |
| PfeI | GAWTC | 8 cut(s) | 672, 851, 1264, 1426, 1729, 1846, 2008, 2141 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 372, 934, 2031 |
| PfoI | TCCNGGA | 1 cut(s) | 348 |
| PinAI | ACCGGT | 1 cut(s) | 1997 |
| PkrI | GCNGC | 6 cut(s) | 141, 516, 529, 1401, 1677, 1891 |
| Ple19I | CGATCG | 1 cut(s) | 1217 |
| PleI | GAGTC | 3 cut(s) | 156, 1638, 1926 |
| PpsI | GAGTC | 3 cut(s) | 156, 1638, 1926 |
| Ppu21I | YACGTR | 1 cut(s) | 1611 |
| PscI | ACATGT | 1 cut(s) | 2044 |
| PshBI | ATTAAT | 1 cut(s) | 2075 |
| Psp124BI | GAGCTC | 1 cut(s) | 83 |
| Psp6I | CCWGG | 3 cut(s) | 129, 365, 2030 |
| PspFI | CCCAGC | 2 cut(s) | 445, 634 |
| PspGI | CCWGG | 3 cut(s) | 129, 365, 2030 |
| PspN4I | GGNNCC | 3 cut(s) | 443, 846, 910 |
| PspPI | GGNCC | 5 cut(s) | 203, 418, 909, 1320, 1666 |
| PstI | CTGCAG | 1 cut(s) | 494 |
| PstNI | CAGNNNCTG | 1 cut(s) | 959 |
| PsuI | RGATCY | 2 cut(s) | 389, 955 |
| PvuI | CGATCG | 1 cut(s) | 1217 |
| RsaI | GTAC | 2 cut(s) | 1042, 1609 |
| RsaNI | GTAC | 2 cut(s) | 1041, 1608 |
| SacI | GAGCTC | 1 cut(s) | 83 |
| SapI | GCTCTTC | 1 cut(s) | 783 |
| SaqAI | TTAA | 6 cut(s) | 191, 276, 923, 1719, 2054, 2075 |
| SatI | GCNGC | 6 cut(s) | 140, 515, 528, 1400, 1676, 1890 |
| Sau3AI | GATC | 8 cut(s) | 297, 389, 898, 955, 1214, 1523, 1623, 1707 |
| Sau96I | GGNCC | 5 cut(s) | 203, 418, 909, 1320, 1666 |
| SchI | GAGTC | 3 cut(s) | 157, 1639, 1927 |
| ScrFI | CCNGG | 6 cut(s) | 131, 350, 367, 1258, 1932, 2032 |
| SduI | GDGCHC | 3 cut(s) | 83, 446, 1335 |
| SfaNI | GCATC | 7 cut(s) | 343, 420, 1108, 1389, 1543, 1591, 1791 |
| SfcI | CTRYAG | 1 cut(s) | 490 |
| SfuI | TTCGAA | 3 cut(s) | 1687, 1761, 1791 |
| SgrAI | CRCCGGYG | 1 cut(s) | 1997 |
| SinI | GGWCC | 3 cut(s) | 203, 418, 1666 |
| SmlI | CTYRAG | 3 cut(s) | 198, 805, 2106 |
| SmoI | CTYRAG | 3 cut(s) | 198, 805, 2106 |
| SnaBI | TACGTA | 1 cut(s) | 1611 |
| SseBI | AGGCCT | 1 cut(s) | 1737 |
| SsiI | CCGC | 8 cut(s) | 215, 236, 888, 1436, 1584, 1889, 1978, 2138 |
| SstI | GAGCTC | 1 cut(s) | 83 |
| StuI | AGGCCT | 1 cut(s) | 1737 |
| StyD4I | CCNGG | 6 cut(s) | 129, 348, 365, 1256, 1930, 2030 |
| StyI | CCWWGG | 3 cut(s) | 414, 1323, 1703 |
| TaaI | ACNGT | 7 cut(s) | 57, 745, 973, 1045, 1063, 1391, 2129 |
| TaiI | ACGT | 3 cut(s) | 265, 383, 1613 |
| TaqI | TCGA | 8 cut(s) | 90, 99, 114, 1213, 1687, 1761, 1791, 1849 |
| TauI | GCSGC | 1 cut(s) | 1892 |
| TfiI | GAWTC | 8 cut(s) | 672, 851, 1264, 1426, 1729, 1846, 2008, 2141 |
| Tru1I | TTAA | 6 cut(s) | 191, 276, 923, 1719, 2054, 2075 |
| Tru9I | TTAA | 6 cut(s) | 191, 276, 923, 1719, 2054, 2075 |
| TscAI | CASTG | 2 cut(s) | 1068, 1186 |
| TseFI | GTSAC | 1 cut(s) | 1711 |
| TseI | GCWGC | 5 cut(s) | 139, 514, 527, 1399, 1675 |
| Tsp45I | GTSAC | 1 cut(s) | 1711 |
| TspGWI | ACGGA | 1 cut(s) | 1658 |
| TspRI | CASTG | 2 cut(s) | 1068, 1186 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 372, 934, 2031 |
| VpaK11BI | GGWCC | 3 cut(s) | 203, 418, 1666 |
| VspI | ATTAAT | 1 cut(s) | 2075 |
| XapI | RAATTY | 5 cut(s) | 705, 752, 2050, 2111, 2149 |
| XceI | RCATGY | 1 cut(s) | 2048 |
| XmnI | GAANNNNTTC | 1 cut(s) | 380 |
| Zsp2I | ATGCAT | 1 cut(s) | 988 |