Rmu_sc0004267.1_g000007

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004267.1
OG0015649
Physical Location & Seq
Reverse (-)
34887 .. 37191
2305 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004267.1_g000007.1.cds

Sequence Viewer

Length: 1590 bp
atggacctctctctgtctctgatgccttccccatatcctgtaagcttcaaacttgttcagactccctctccatacagaagcagatacataagaacccaacaaggtaagctacttattttcacaacactttcatgctctgctagaaatcttgctgataaaacacaccagacatccccaaaagattatggctgtcactcccatagtgaagaacccaagttgggttttgatgaaattactagtagattgcatgtacagagtttagttgacagaattagagctttgcacactggagagacaagtgaaattcttagtatttttgagcaagatggttgctttagaaccatttctgagttcaatgatctgctcatggctttagttgtagcgaaagagtttgatattgctttgagcttgtatgatgaaatatcatcttactgtttagttcctgattcttccacattttctattgtgattacctgttactgtgagaaaaatgatctggatgaggccaagagggttttagtccatatgattgaaaatgggtttaacccaagtgttgcaacaatgacttttgtgatagattcattatgcaaaaagggtagattgcagagagctttggaggtttttgaggtgatgggtagagttgggtccaagcccactgttcaaatgtacaattgcttgttaaagggtttgtgctatgtgggaagagtggaggatgcatatgaaatgttgatgaagataaagaagggtgttgtagaacctgacatttttacatacacagctgttatggatggtttttgtaaagtgggtcgcacagatgaggcgatggaactgcttaatgaagctgtggagttgggattaataccagatgtggttgctttcaatactctgtttgatgggtactgcagggagggtagggcaatggagggacttaatgtgttgaagcagatgaaggagagaaactgcatccctgattatattacttatagcacattgttacatggattgttgaaatggggtaagacccgtaatgcactaaggatttacaaggagatggtggaaattggtttcgaagtggatgagagattgacgaatgctcttgtgagagggttatgcaggagatcatcgaaggaaaaagacctgttggaagatgcctgtaaactgtttgaaaaattgcagaatggggtttttgacatagaagctagtacatatgggcttatgatccaaagtctttgcatggaaaagaagattgatgacgctatgatcaatttgaagcagatgatggcagtgggttattcaccatggatgatcacctttaacaaagtgattcaaaccctctgttctgaggacaagatgattgatgcattattagttttaggtactgcgaacattgtggttaactccaatcctgtgttcagtgctgatgtgcttcaagtgattactatgcaaatgattgaagaatttagagctgcacgacgtggaacctttgcaaatccgcagcttgacttaggagcctatgccttcaccttttgtcaaaaactcaacgcggatggtctggatggtgctgagctagaaaagtatattgtggagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_1 PPR_2 PPR_3

Protein Analysis

529

Amino Acids

59.72

Weight (kDa)

5.27

Isoelectric Point (pI)

36.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015649)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g09870
malus_domestica MD04G1174700.v1.1
prunus_persica Prupe.6G293600_v2.0.a1
pyrus_communis pycom04g15410
rosa_chinensis RchiOBHm_Chr3g0460471
rosa_laevigata RLG00000025002 RLG00000025008
rosa_multiflora Rmu_co8379257.1_g000001 Rmu_sc0004267.1_g000007
rosa_roxburghii Rroxscaffold_6G00419450
rosa_rugosa Rorug03G0042900
rosa_samantha Rh3AG101000 Rh3BG105000 Rh3CG106800 Rh3DG106300
rosa_wichuraiana Rw3G008590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 1544
AciI CCGC 2 cut(s) 1493, 1544
AclWI GGATC 1 cut(s) 1213
AcsI RAATTY 2 cut(s) 303, 1457
AdeI CACNNNGTG 1 cut(s) 1475
AfaI GTAC 5 cut(s) 252, 668, 899, 1204, 1378
AfiI CCNNNNNNNGG 1 cut(s) 218
AhlI ACTAGT 1 cut(s) 236
AjiI CACGTC 1 cut(s) 1475
AjuI GAANNNNNNNTTGG 2 cut(s) 1394, 1426
Alw26I GTCTC 2 cut(s) 21, 287
AlwI GGATC 1 cut(s) 1213
AoxI GGCC 1 cut(s) 504
ApeKI GCWGC 2 cut(s) 1466, 1495
ApoI RAATTY 2 cut(s) 303, 1457
AseI ATTAAT 1 cut(s) 857
Asp700I GAANNNNTTC 1 cut(s) 343
AspS9I GGNCC 2 cut(s) 4, 645
AsuHPI GGTGA 4 cut(s) 640, 1287, 1300, 1513
AsuII TTCGAA 1 cut(s) 1068
AvaII GGWCC 2 cut(s) 4, 645
BbvI GCAGC 2 cut(s) 1453, 1507
BccI CCATC 9 cut(s) 320, 625, 782, 817, 887, 1045, 1273, 1541, 1550
BcgI CGANNNNNNTGC 2 cut(s) 811, 845
BclI TGATCA 2 cut(s) 1260, 1305
BcoDI GTCTC 2 cut(s) 21, 287
BcuI ACTAGT 1 cut(s) 236
BfaI CTAG 4 cut(s) 141, 237, 1200, 1568
BfmI CTRYAG 1 cut(s) 901
BisI GCNGC 2 cut(s) 1467, 1496
BlpI GCTNAGC 1 cut(s) 1563
BlsI GCNGC 2 cut(s) 1468, 1497
Bme18I GGWCC 2 cut(s) 4, 645
BmgBI CACGTC 1 cut(s) 1475
BmgT120I GGNCC 2 cut(s) 4, 645
BmiI GGNNCC 3 cut(s) 646, 1480, 1510
BmsI GCATC 5 cut(s) 12, 703, 972, 1138, 1348
BpmI CTGGAG 1 cut(s) 309
Bpu1102I GCTNAGC 1 cut(s) 1563
Bpu14I TTCGAA 1 cut(s) 1068
BsaJI CCNNGG 1 cut(s) 1298
BsaXI ACNNNNNCTCC 2 cut(s) 52, 82
Bsc4I CCNNNNNNNGG 1 cut(s) 218
Bse1I ACTGG 1 cut(s) 292
Bse3DI GCAATG 1 cut(s) 924
BseDI CCNNGG 1 cut(s) 1298
BseGI GGATG 9 cut(s) 170, 505, 718, 793, 963, 1081, 1308, 1552, 1561
BseLI CCNNNNNNNGG 1 cut(s) 218
BseMI GCAATG 1 cut(s) 924
BseMII CTCAG 3 cut(s) 339, 1332, 1554
BseNI ACTGG 1 cut(s) 292
BseXI GCAGC 2 cut(s) 1453, 1507
BsgI GTGCAG 1 cut(s) 1452
Bsh1236I CGCG 1 cut(s) 1544
BshFI GGCC 1 cut(s) 506
BslFI GGGAC 1 cut(s) 939
BslI CCNNNNNNNGG 1 cut(s) 218
BsmAI GTCTC 2 cut(s) 21, 287
BsmFI GGGAC 1 cut(s) 939
BsmI GAATGC 1 cut(s) 1096
BsnI GGCC 1 cut(s) 506
Bsp119I TTCGAA 1 cut(s) 1068
Bsp1407I TGTACA 2 cut(s) 250, 666
Bsp143I GATC 6 cut(s) 358, 493, 1118, 1218, 1260, 1305
Bsp1720I GCTNAGC 1 cut(s) 1563
Bsp19I CCATGG 1 cut(s) 1298
BspACI CCGC 2 cut(s) 1493, 1544
BspANI GGCC 1 cut(s) 506
BspCNI CTCAG 3 cut(s) 340, 1333, 1555
BspFNI CGCG 1 cut(s) 1544
BspLI GGNNCC 3 cut(s) 646, 1480, 1510
BspMAI CTGCAG 1 cut(s) 905
BspPI GGATC 1 cut(s) 1213
BspT104I TTCGAA 1 cut(s) 1068
BsrDI GCAATG 1 cut(s) 924
BsrGI TGTACA 2 cut(s) 250, 666
BsrI ACTGG 1 cut(s) 292
BssECI CCNNGG 1 cut(s) 1298
BssMI GATC 6 cut(s) 358, 493, 1118, 1218, 1260, 1305
BssT1I CCWWGG 1 cut(s) 1298
Bst4CI ACNGT 4 cut(s) 434, 482, 658, 1161
Bst6I CTCTTC 1 cut(s) 697
BstAUI TGTACA 2 cut(s) 250, 666
BstBI TTCGAA 1 cut(s) 1068
BstDEI CTNAG 6 cut(s) 308, 348, 1034, 1341, 1504, 1563
BstDSI CCRYGG 1 cut(s) 1298
BstF5I GGATG 9 cut(s) 170, 505, 718, 793, 963, 1081, 1308, 1552, 1561
BstFNI CGCG 1 cut(s) 1544
BstKTI GATC 6 cut(s) 361, 496, 1121, 1221, 1263, 1308
BstMAI GTCTC 2 cut(s) 21, 287
BstMBI GATC 6 cut(s) 358, 493, 1118, 1218, 1260, 1305
BstNSI RCATGY 1 cut(s) 251
BstSFI CTRYAG 1 cut(s) 901
BstUI CGCG 1 cut(s) 1544
BstV1I GCAGC 2 cut(s) 1453, 1507
BsuRI GGCC 1 cut(s) 506
BtgI CCRYGG 1 cut(s) 1298
BtgZI GCGATG 1 cut(s) 836
BtrI CACGTC 1 cut(s) 1475
BtsCI GGATG 9 cut(s) 170, 505, 718, 793, 963, 1081, 1308, 1552, 1561
BtsI GCAGTG 1 cut(s) 1290
BtsIMutI CAGTG 4 cut(s) 285, 654, 1290, 1420
Cfr13I GGNCC 2 cut(s) 4, 645
CseI GACGC 1 cut(s) 1262
Csp6I GTAC 5 cut(s) 251, 667, 898, 1203, 1377
CviAII CATG 6 cut(s) 132, 248, 367, 998, 1234, 1299
CviQI GTAC 5 cut(s) 251, 667, 898, 1203, 1377
DdeI CTNAG 6 cut(s) 308, 348, 1034, 1341, 1504, 1563
DpnI GATC 6 cut(s) 360, 495, 1120, 1220, 1262, 1307
DpnII GATC 6 cut(s) 358, 493, 1118, 1218, 1260, 1305
DraIII CACNNNGTG 1 cut(s) 1475
Eam1104I CTCTTC 1 cut(s) 697
EarI CTCTTC 1 cut(s) 697
Eco130I CCWWGG 1 cut(s) 1298
Eco47I GGWCC 2 cut(s) 4, 645
EcoT14I CCWWGG 1 cut(s) 1298
EcoT22I ATGCAT 2 cut(s) 718, 1363
ErhI CCWWGG 1 cut(s) 1298
FaeI CATG 6 cut(s) 135, 251, 370, 1001, 1237, 1302
FaqI GGGAC 1 cut(s) 939
FatI CATG 6 cut(s) 131, 247, 366, 997, 1233, 1298
FauNDI CATATG 3 cut(s) 525, 718, 1207
FbaI TGATCA 2 cut(s) 1260, 1305
Fnu4HI GCNGC 2 cut(s) 1467, 1496
FokI GGATG 9 cut(s) 157, 512, 725, 800, 950, 1088, 1315, 1559, 1568
Fsp4HI GCNGC 2 cut(s) 1467, 1496
FspBI CTAG 4 cut(s) 141, 237, 1200, 1568
GluI GCNGC 2 cut(s) 1467, 1496
GsuI CTGGAG 1 cut(s) 309
HaeIII GGCC 1 cut(s) 506
HgaI GACGC 1 cut(s) 1262
Hin1II CATG 6 cut(s) 135, 251, 370, 1001, 1237, 1302
HincII GTYRAC 2 cut(s) 265, 1396
HindII GTYRAC 2 cut(s) 265, 1396
HindIII AAGCTT 1 cut(s) 43
HinfI GANTC 4 cut(s) 61, 446, 578, 1324
HpaI GTTAAC 1 cut(s) 1396
HphI GGTGA 4 cut(s) 640, 1287, 1300, 1513
Hpy166II GTNNAC 3 cut(s) 265, 1157, 1396
Hpy188I TCNGA 4 cut(s) 21, 60, 349, 1342
Hpy188III TCNNGA 3 cut(s) 443, 497, 1553
Hpy8I GTNNAC 3 cut(s) 265, 1157, 1396
Hpy99I CGWCG 1 cut(s) 1476
HpyAV CCTTC 5 cut(s) 36, 736, 943, 1120, 1528
HpyCH4III ACNGT 4 cut(s) 434, 482, 658, 1161
HpyCH4IV ACGT 1 cut(s) 1474
HpyF3I CTNAG 6 cut(s) 308, 348, 1034, 1341, 1504, 1563
HpySE526I ACGT 1 cut(s) 1474
Hsp92II CATG 6 cut(s) 135, 251, 370, 1001, 1237, 1302
Ksp22I TGATCA 2 cut(s) 1260, 1305
KspAI GTTAAC 1 cut(s) 1396
Kzo9I GATC 6 cut(s) 358, 493, 1118, 1218, 1260, 1305
LmnI GCTCC 1 cut(s) 1508
Lsp1109I GCAGC 2 cut(s) 1453, 1507
LweI GCATC 5 cut(s) 12, 703, 972, 1138, 1348
MaeI CTAG 4 cut(s) 141, 237, 1200, 1568
MaeII ACGT 1 cut(s) 1474
MaeIII GTNAC 3 cut(s) 191, 476, 993
MalI GATC 6 cut(s) 360, 495, 1120, 1220, 1262, 1307
MboI GATC 6 cut(s) 358, 493, 1118, 1218, 1260, 1305
MboII GAAGA 7 cut(s) 218, 441, 714, 745, 1157, 1255, 1466
MfeI CAATTG 1 cut(s) 670
MluCI AATT 8 cut(s) 231, 270, 303, 670, 1059, 1169, 1264, 1457
MlyI GAGTC 1 cut(s) 55
MmeI TCCRAC 1 cut(s) 1122
Mph1103I ATGCAT 2 cut(s) 718, 1363
MroXI GAANNNNTTC 1 cut(s) 343
MseI TTAA 7 cut(s) 543, 680, 834, 857, 930, 1314, 1395
MslI CAYNNNNRTG 1 cut(s) 130
MspA1I CMGCKG 1 cut(s) 779
MunI CAATTG 1 cut(s) 670
Mva1269I GAATGC 1 cut(s) 1096
MvnI CGCG 1 cut(s) 1544
NcoI CCATGG 1 cut(s) 1298
NdeI CATATG 3 cut(s) 525, 718, 1207
NdeII GATC 6 cut(s) 358, 493, 1118, 1218, 1260, 1305
NlaIII CATG 6 cut(s) 135, 251, 370, 1001, 1237, 1302
NlaIV GGNNCC 3 cut(s) 646, 1480, 1510
NmuCI GTSAC 1 cut(s) 191
NsiI ATGCAT 2 cut(s) 718, 1363
NspI RCATGY 1 cut(s) 251
NspV TTCGAA 1 cut(s) 1068
PctI GAATGC 1 cut(s) 1096
PdmI GAANNNNTTC 1 cut(s) 343
PfeI GAWTC 3 cut(s) 446, 578, 1324
PkrI GCNGC 2 cut(s) 1468, 1497
PleI GAGTC 1 cut(s) 55
PpsI GAGTC 1 cut(s) 55
PshBI ATTAAT 1 cut(s) 857
PspN4I GGNNCC 3 cut(s) 646, 1480, 1510
PspPI GGNCC 2 cut(s) 4, 645
PstI CTGCAG 1 cut(s) 905
PvuII CAGCTG 1 cut(s) 779
RsaI GTAC 5 cut(s) 252, 668, 899, 1204, 1378
RsaNI GTAC 5 cut(s) 251, 667, 898, 1203, 1377
RseI CAYNNNNRTG 1 cut(s) 130
SaqAI TTAA 7 cut(s) 543, 680, 834, 857, 930, 1314, 1395
SatI GCNGC 2 cut(s) 1467, 1496
Sau3AI GATC 6 cut(s) 358, 493, 1118, 1218, 1260, 1305
Sau96I GGNCC 2 cut(s) 4, 645
SchI GAGTC 1 cut(s) 55
SfaNI GCATC 5 cut(s) 12, 703, 972, 1138, 1348
SfcI CTRYAG 1 cut(s) 901
SfuI TTCGAA 1 cut(s) 1068
SinI GGWCC 2 cut(s) 4, 645
SmiMI CAYNNNNRTG 1 cut(s) 130
SpeI ACTAGT 1 cut(s) 236
Sse9I AATT 8 cut(s) 231, 270, 303, 670, 1059, 1169, 1264, 1457
SsiI CCGC 2 cut(s) 1493, 1544
SspMI CTAG 4 cut(s) 141, 237, 1200, 1568
StyI CCWWGG 1 cut(s) 1298
TaaI ACNGT 4 cut(s) 434, 482, 658, 1161
TaiI ACGT 1 cut(s) 1477
TaqI TCGA 2 cut(s) 1068, 1124
TasI AATT 8 cut(s) 231, 270, 303, 670, 1059, 1169, 1264, 1457
TatI WGTACW 3 cut(s) 250, 666, 1202
TfiI GAWTC 3 cut(s) 446, 578, 1324
Tru1I TTAA 7 cut(s) 543, 680, 834, 857, 930, 1314, 1395
Tru9I TTAA 7 cut(s) 543, 680, 834, 857, 930, 1314, 1395
TscAI CASTG 4 cut(s) 292, 661, 1290, 1420
TseFI GTSAC 1 cut(s) 191
TseI GCWGC 2 cut(s) 1466, 1495
Tsp45I GTSAC 1 cut(s) 191
TspDTI ATGAA 8 cut(s) 120, 243, 432, 570, 735, 746, 852, 962
TspRI CASTG 4 cut(s) 292, 661, 1290, 1420
VpaK11BI GGWCC 2 cut(s) 4, 645
VspI ATTAAT 1 cut(s) 857
XapI RAATTY 2 cut(s) 303, 1457
XceI RCATGY 1 cut(s) 251
XmnI GAANNNNTTC 1 cut(s) 343
XspI CTAG 4 cut(s) 141, 237, 1200, 1568
Zsp2I ATGCAT 2 cut(s) 718, 1363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.