Prupe.6G323100_v2.0.a1

ZINC FINGER protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0014758
Physical Location & Seq
Reverse (-)
28485346 .. 28487933
2588 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G323100.1

Sequence Viewer

Length: 1575 bp
ATGTCAATTATCACAGGTAGTGCGGCTGGGAGTTTCTCTTCAGGAAATACCGGTGGAGAAGAAGTTCAACAGCAACAGCAACAAGAGCTTTTAAATCATGCAAATTTTCATGGCTCAAACTCCTTCCTTTCAACAACACCACCAAATATCAATAGCAATGGTACTCAACCAAAGCAACCTCCCCAAGTTAAGAGGAAAAGAAACCTACCAGGAACTCCAGACCCAAGTGCTGAAGTGGTTGCCTTATCACCAAAGACCCTCATGGCCACCAACCGATTTGTGTGCGAAATTTGCAAGAAGGGGTTCCAAAGGGACCAAAACCTGCAATTACACAGAAGAGGCCACAACTTGCCATGGAAGCTTAAGCAAAGAACGAGTACTGAAATCATAAAGCGGGTCTATGTATGCCCCGAACCCTCTTGCGTCCACCATGACCCGTCACGGGCACTCGGGGATCTTACCGGCATCAAGAAGCACTTCTGCCGGAAGCATGGTGAGAAAAAGTGGAAATGTGACAAATGCTCCAAGAAGTATGCGGTGCAATCGGACTGGAAAGCTCATTCAAAGACCTGTGGTACTAGAGAATACAAATGTGACTGTGGAACCATCTTCTCCAGAAGAGATAGTTTTATCACCCACAGAGCTTTCTGTGATGCCATAGCTGAAGAAAATAACACAGCAAACCAAGGAGTGTTAATGTCCAACAATATTAACAATGGAGCACCAATCTTACAAGGTCAAGTTTCCAACAGCGACCTCATCAGCCCTTCCTCCATCAACAACAGCAACAAAACCACCAACAATCCATCAACAAGATCAAGCACAACATCTGATCAATTCAACCATAATTTTGATACCAAAATCCCTTTATCCTTAGTGCCCCAACAACCTTTGCCAATGTCCTCAAAACCCTTAAACATGTTACCAAGAAGCCTAAACAACAACAACAACAACAACACTTCTTCATCATCACCATCACCACTGCTCTTCGAATTAAGTCACGGGCATGGCCTGATCCCTAGCTCATCAGGCCACTTGTCTGCCACGGAGCTGCTCCAGAAAGCTGCGCAAATGGGTGCAACCATGAGCAGCACTAGCCCTAGCCCTAGCGGTACAACAATCACAAGCATGGCACCCTCAACATATGGTACGACTACTACCGGTGGGTACAATGTGAACCCCTTCATGCAGCACAGAGATCATCATAATGTCAATGTTAGTCCACAATTAGAGAACTCGTTTTTTGGTGCTAATAATTATGCCCAAATGGGGATGTATGGCGGGCTTTTATTCGATCCTCATCAAAACAATGGCTTGTTGAAGAACATGGAGCAGGACAATAATGGAAATTCAAGTAAATTTGGATTGAGGGGTACTAATGTGAGTGGAGGGGATACGTTGACGGTTGACTTTTTGGGGATCGGAGGGTCAGCAAATGTCAATAGACCAGAAGATTTTCATGGTCAACAGAAACAGCAACATGACCAGCATCAGCAGCAGCAGCAGCAGCAGCAAGACCAGTTGGGGTTCGGAGGAATTGATGATGATCACCTAAGAATGCAAAGGTTTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C2H2 zf-C2H2_jaz

Protein Analysis

525

Amino Acids

57.51

Weight (kDa)

9.02

Isoelectric Point (pI)

52.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014758)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g06270 FvH4_6g06270
malus_domestica MD04G1203000.v1.1 MD12G1216800.v1.1
prunus_persica Prupe.6G323100_v2.0.a1
pyrus_communis pycom04g17930 pycom12g20230
rosa_chinensis RchiOBHm_Chr3g0455311
rosa_laevigata RLG00000025371
rosa_roxburghii Rroxscaffold_6G00424390
rosa_rugosa Rorug03G0006000 Rorug03G0006100
rosa_samantha Rh3AG065900 Rh3BG068000 Rh3CG066400 Rh3DG068000
rosa_wichuraiana Rw3G005190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1068
Acc36I ACCTGC 1 cut(s) 330
AccB1I GGYRCC 1 cut(s) 1132
AciI CCGC 5 cut(s) 23, 394, 536, 1110, 1281
AclWI GGATC 4 cut(s) 462, 1009, 1289, 1427
AcoI YGGCCR 1 cut(s) 264
AcsI RAATTY 4 cut(s) 103, 288, 1348, 1358
AcuI CTGAAG 3 cut(s) 24, 252, 684
AfaI GTAC 7 cut(s) 163, 379, 577, 1114, 1150, 1169, 1375
AfiI CCNNNNNNNGG 2 cut(s) 442, 1269
AflII CTTAAG 1 cut(s) 362
AflIII ACRYGT 1 cut(s) 918
AgeI ACCGGT 2 cut(s) 50, 1160
AgsI TTSAA 6 cut(s) 68, 132, 564, 841, 1321, 1353
AjnI CCWGG 1 cut(s) 208
AloI GAACNNNNNNTCC 2 cut(s) 48, 80
AluBI AGCT 8 cut(s) 88, 361, 557, 644, 662, 1023, 1051, 1064
AluI AGCT 8 cut(s) 88, 361, 557, 644, 662, 1023, 1051, 1064
Alw21I GWGCWC 1 cut(s) 724
AlwI GGATC 4 cut(s) 462, 1009, 1289, 1427
Ama87I CYCGRG 1 cut(s) 449
AoxI GGCC 4 cut(s) 264, 340, 1009, 1030
ApoI RAATTY 4 cut(s) 103, 288, 1348, 1358
AsiGI ACCGGT 2 cut(s) 50, 1160
Asp700I GAANNNNTTC 5 cut(s) 63, 302, 476, 1181, 1455
AspLEI GCGC 1 cut(s) 1069
AspS9I GGNCC 1 cut(s) 313
AsuHPI GGTGA 6 cut(s) 240, 506, 625, 963, 969, 1541
AsuII TTCGAA 1 cut(s) 990
AvaI CYCGRG 1 cut(s) 449
AvaII GGWCC 1 cut(s) 313
BaeGI GKGCMC 2 cut(s) 448, 882
BaeI ACNNNNGTAYC 2 cut(s) 1365, 1398
BalI TGGCCA 1 cut(s) 266
BanI GGYRCC 1 cut(s) 1132
Bbv12I GWGCWC 1 cut(s) 724
BccI CCATC 4 cut(s) 614, 782, 814, 982
BcgI CGANNNNNNTGC 2 cut(s) 264, 298
BciT130I CCWGG 1 cut(s) 210
BciVI GTATCC 1 cut(s) 1387
BclI TGATCA 2 cut(s) 832, 1546
BfaI CTAG 5 cut(s) 579, 1020, 1095, 1101, 1107
BfrI CTTAAG 1 cut(s) 362
BfuAI ACCTGC 1 cut(s) 330
BfuI GTATCC 1 cut(s) 1387
BmcAI AGTACT 1 cut(s) 379
Bme1390I CCNGG 1 cut(s) 210
Bme18I GGWCC 1 cut(s) 313
BmeT110I CYCGRG 1 cut(s) 449
BmgT120I GGNCC 1 cut(s) 313
BmiI GGNNCC 4 cut(s) 305, 314, 604, 1134
BmrFI CCNGG 1 cut(s) 210
BmsI GCATC 3 cut(s) 474, 643, 1498
BpmI CTGGAG 3 cut(s) 201, 598, 1040
Bpu14I TTCGAA 1 cut(s) 990
BsaBI GATNNNNATC 2 cut(s) 1299, 1545
BsaJI CCNNGG 3 cut(s) 353, 685, 1044
BsaWI WCCGGW 2 cut(s) 50, 1160
BsaXI ACNNNNNCTCC 4 cut(s) 48, 78, 506, 536
Bsc4I CCNNNNNNNGG 2 cut(s) 442, 1269
Bse118I RCCGGY 3 cut(s) 50, 461, 1160
Bse1I ACTGG 2 cut(s) 554, 1519
Bse3DI GCAATG 1 cut(s) 163
Bse8I GATNNNNATC 2 cut(s) 1299, 1545
BseBI CCWGG 1 cut(s) 210
BseDI CCNNGG 3 cut(s) 353, 685, 1044
BseGI GGATG 1 cut(s) 1278
BseJI GATNNNNATC 2 cut(s) 1299, 1545
BseLI CCNNNNNNNGG 2 cut(s) 442, 1269
BseMI GCAATG 1 cut(s) 163
BseNI ACTGG 2 cut(s) 554, 1519
BseSI GKGCMC 2 cut(s) 448, 882
BseYI CCCAGC 1 cut(s) 26
BshFI GGCC 4 cut(s) 266, 342, 1011, 1032
BshNI GGYRCC 1 cut(s) 1132
BshTI ACCGGT 2 cut(s) 50, 1160
BsiHKAI GWGCWC 1 cut(s) 724
BsiHKCI CYCGRG 1 cut(s) 449
BsiSI CCGG 4 cut(s) 51, 462, 484, 1161
BslFI GGGAC 1 cut(s) 326
BslI CCNNNNNNNGG 2 cut(s) 442, 1269
BsmFI GGGAC 1 cut(s) 326
BsmI GAATGC 1 cut(s) 1563
BsnI GGCC 4 cut(s) 266, 342, 1011, 1032
BsoBI CYCGRG 1 cut(s) 449
Bsp119I TTCGAA 1 cut(s) 990
Bsp1286I GDGCHC 3 cut(s) 448, 724, 882
Bsp143I GATC 8 cut(s) 454, 815, 832, 1014, 1198, 1294, 1419, 1546
Bsp19I CCATGG 1 cut(s) 353
BspACI CCGC 5 cut(s) 23, 394, 536, 1110, 1281
BspANI GGCC 4 cut(s) 266, 342, 1011, 1032
BspLI GGNNCC 4 cut(s) 305, 314, 604, 1134
BspMI ACCTGC 1 cut(s) 330
BspPI GGATC 4 cut(s) 462, 1009, 1289, 1427
BspQI GCTCTTC 1 cut(s) 992
BspT104I TTCGAA 1 cut(s) 990
BspT107I GGYRCC 1 cut(s) 1132
BspTI CTTAAG 1 cut(s) 362
BsrDI GCAATG 1 cut(s) 163
BsrFI RCCGGY 3 cut(s) 50, 461, 1160
BsrI ACTGG 2 cut(s) 554, 1519
BssAI RCCGGY 3 cut(s) 50, 461, 1160
BssECI CCNNGG 3 cut(s) 353, 685, 1044
BssMI GATC 8 cut(s) 454, 815, 832, 1014, 1198, 1294, 1419, 1546
BssT1I CCWWGG 2 cut(s) 353, 685
Bst2UI CCWGG 1 cut(s) 210
Bst4CI ACNGT 2 cut(s) 599, 1405
Bst6I CTCTTC 4 cut(s) 43, 331, 613, 992
BstAFI CTTAAG 1 cut(s) 362
BstBI TTCGAA 1 cut(s) 990
BstC8I GCNNGC 1 cut(s) 1283
BstDEI CTNAG 2 cut(s) 874, 1553
BstDSI CCRYGG 2 cut(s) 353, 1044
BstF5I GGATG 1 cut(s) 1278
BstHHI GCGC 1 cut(s) 1069
BstKTI GATC 8 cut(s) 457, 818, 835, 1017, 1201, 1297, 1422, 1549
BstMBI GATC 8 cut(s) 454, 815, 832, 1014, 1198, 1294, 1419, 1546
BstNI CCWGG 1 cut(s) 210
BstNSI RCATGY 1 cut(s) 922
BstSCI CCNGG 1 cut(s) 208
BstSLI GKGCMC 2 cut(s) 448, 882
BstX2I RGATCY 1 cut(s) 454
BstYI RGATCY 1 cut(s) 454
BsuI GTATCC 1 cut(s) 1387
BsuRI GGCC 4 cut(s) 266, 342, 1011, 1032
BtgI CCRYGG 2 cut(s) 353, 1044
BtsCI GGATG 1 cut(s) 1278
BtsI GCAGTG 1 cut(s) 980
BtsIMutI CAGTG 1 cut(s) 980
BveI ACCTGC 1 cut(s) 330
Cac8I GCNNGC 1 cut(s) 1283
CfoI GCGC 1 cut(s) 1069
Cfr10I RCCGGY 3 cut(s) 50, 461, 1160
Cfr13I GGNCC 1 cut(s) 313
CseI GACGC 1 cut(s) 412
Csp6I GTAC 7 cut(s) 162, 378, 576, 1113, 1149, 1168, 1374
CspAI ACCGGT 2 cut(s) 50, 1160
CviQI GTAC 7 cut(s) 162, 378, 576, 1113, 1149, 1168, 1374
DdeI CTNAG 2 cut(s) 874, 1553
DpnI GATC 8 cut(s) 456, 817, 834, 1016, 1200, 1296, 1421, 1548
DpnII GATC 8 cut(s) 454, 815, 832, 1014, 1198, 1294, 1419, 1546
DraI TTTAAA 1 cut(s) 93
EaeI YGGCCR 1 cut(s) 264
Eam1104I CTCTTC 4 cut(s) 43, 331, 613, 992
EarI CTCTTC 4 cut(s) 43, 331, 613, 992
Eco130I CCWWGG 2 cut(s) 353, 685
Eco47I GGWCC 1 cut(s) 313
Eco57I CTGAAG 3 cut(s) 24, 252, 684
Eco88I CYCGRG 1 cut(s) 449
EcoRII CCWGG 1 cut(s) 208
EcoT14I CCWWGG 2 cut(s) 353, 685
ErhI CCWWGG 2 cut(s) 353, 685
FalI AAGNNNNNCTT 2 cut(s) 461, 493
FaqI GGGAC 1 cut(s) 326
FauI CCCGC 2 cut(s) 387, 1274
FauNDI CATATG 1 cut(s) 1144
FbaI TGATCA 2 cut(s) 832, 1546
FokI GGATG 1 cut(s) 1285
FspBI CTAG 5 cut(s) 579, 1020, 1095, 1101, 1107
FspI TGCGCA 1 cut(s) 1068
GlaI GCGC 1 cut(s) 1068
GsaI CCCAGC 1 cut(s) 30
GsuI CTGGAG 3 cut(s) 201, 598, 1040
HaeIII GGCC 4 cut(s) 266, 342, 1011, 1032
HapII CCGG 4 cut(s) 51, 462, 484, 1161
HgaI GACGC 1 cut(s) 412
HhaI GCGC 1 cut(s) 1069
Hin6I GCGC 1 cut(s) 1067
HinP1I GCGC 1 cut(s) 1067
HincII GTYRAC 3 cut(s) 1401, 1408, 1466
HindII GTYRAC 3 cut(s) 1401, 1408, 1466
HindIII AAGCTT 1 cut(s) 359
HpaII CCGG 4 cut(s) 51, 462, 484, 1161
HphI GGTGA 6 cut(s) 240, 506, 625, 963, 969, 1541
Hpy166II GTNNAC 6 cut(s) 427, 1177, 1223, 1401, 1408, 1466
Hpy188I TCNGA 4 cut(s) 547, 832, 1424, 1532
Hpy188III TCNNGA 5 cut(s) 42, 218, 469, 615, 1057
Hpy8I GTNNAC 6 cut(s) 427, 1177, 1223, 1401, 1408, 1466
HpyAV CCTTC 4 cut(s) 133, 292, 777, 1192
HpyCH4III ACNGT 2 cut(s) 599, 1405
HpyCH4IV ACGT 1 cut(s) 1397
HpyCH4V TGCA 7 cut(s) 101, 294, 325, 541, 1079, 1189, 1561
HpyF3I CTNAG 2 cut(s) 874, 1553
HpySE526I ACGT 1 cut(s) 1397
HspAI GCGC 1 cut(s) 1067
Ksp22I TGATCA 2 cut(s) 832, 1546
Kzo9I GATC 8 cut(s) 454, 815, 832, 1014, 1198, 1294, 1419, 1546
LguI GCTCTTC 1 cut(s) 992
LmnI GCTCC 5 cut(s) 527, 719, 1048, 1059, 1330
LweI GCATC 3 cut(s) 474, 643, 1498
MaeI CTAG 5 cut(s) 579, 1020, 1095, 1101, 1107
MaeII ACGT 1 cut(s) 1397
MaeIII GTNAC 5 cut(s) 438, 512, 593, 921, 998
MalI GATC 8 cut(s) 456, 817, 834, 1016, 1200, 1296, 1421, 1548
MboI GATC 8 cut(s) 454, 815, 832, 1014, 1198, 1294, 1419, 1546
MflI RGATCY 1 cut(s) 454
MhlI GDGCHC 3 cut(s) 448, 724, 882
MlsI TGGCCA 1 cut(s) 266
MluNI TGGCCA 1 cut(s) 266
MmeI TCCRAC 2 cut(s) 726, 771
Mox20I TGGCCA 1 cut(s) 266
MroXI GAANNNNTTC 5 cut(s) 63, 302, 476, 1181, 1455
MscI TGGCCA 1 cut(s) 266
MseI TTAA 8 cut(s) 92, 189, 363, 695, 711, 914, 995, 1569
MslI CAYNNNNRTG 3 cut(s) 1005, 1127, 1206
Msp20I TGGCCA 1 cut(s) 266
MspCI CTTAAG 1 cut(s) 362
MspI CCGG 4 cut(s) 51, 462, 484, 1161
MspR9I CCNGG 1 cut(s) 210
Mva1269I GAATGC 1 cut(s) 1563
MvaI CCWGG 1 cut(s) 210
NcoI CCATGG 1 cut(s) 353
NdeI CATATG 1 cut(s) 1144
NdeII GATC 8 cut(s) 454, 815, 832, 1014, 1198, 1294, 1419, 1546
NlaIV GGNNCC 4 cut(s) 305, 314, 604, 1134
NmuCI GTSAC 4 cut(s) 438, 512, 593, 998
NsbI TGCGCA 1 cut(s) 1068
NspI RCATGY 1 cut(s) 922
NspV TTCGAA 1 cut(s) 990
PciI ACATGT 1 cut(s) 918
PciSI GCTCTTC 1 cut(s) 992
PctI GAATGC 1 cut(s) 1563
PdmI GAANNNNTTC 5 cut(s) 63, 302, 476, 1181, 1455
PinAI ACCGGT 2 cut(s) 50, 1160
PscI ACATGT 1 cut(s) 918
Psp6I CCWGG 1 cut(s) 208
PspFI CCCAGC 1 cut(s) 26
PspGI CCWGG 1 cut(s) 208
PspN4I GGNNCC 4 cut(s) 305, 314, 604, 1134
PspPI GGNCC 1 cut(s) 313
PsuI RGATCY 1 cut(s) 454
RsaI GTAC 7 cut(s) 163, 379, 577, 1114, 1150, 1169, 1375
RsaNI GTAC 7 cut(s) 162, 378, 576, 1113, 1149, 1168, 1374
RseI CAYNNNNRTG 3 cut(s) 1005, 1127, 1206
SapI GCTCTTC 1 cut(s) 992
SaqAI TTAA 8 cut(s) 92, 189, 363, 695, 711, 914, 995, 1569
Sau3AI GATC 8 cut(s) 454, 815, 832, 1014, 1198, 1294, 1419, 1546
Sau96I GGNCC 1 cut(s) 313
ScaI AGTACT 1 cut(s) 379
ScrFI CCNGG 1 cut(s) 210
SduI GDGCHC 3 cut(s) 448, 724, 882
SfaNI GCATC 3 cut(s) 474, 643, 1498
SfuI TTCGAA 1 cut(s) 990
SinI GGWCC 1 cut(s) 313
SmiMI CAYNNNNRTG 3 cut(s) 1005, 1127, 1206
SmlI CTYRAG 1 cut(s) 362
SmoI CTYRAG 1 cut(s) 362
SsiI CCGC 5 cut(s) 23, 394, 536, 1110, 1281
SspI AATATT 1 cut(s) 709
SspMI CTAG 5 cut(s) 579, 1020, 1095, 1101, 1107
StyD4I CCNGG 1 cut(s) 208
StyI CCWWGG 2 cut(s) 353, 685
TaaI ACNGT 2 cut(s) 599, 1405
TaiI ACGT 1 cut(s) 1400
TaqI TCGA 2 cut(s) 990, 1293
TatI WGTACW 1 cut(s) 377
TauI GCSGC 1 cut(s) 26
Tru1I TTAA 8 cut(s) 92, 189, 363, 695, 711, 914, 995, 1569
Tru9I TTAA 8 cut(s) 92, 189, 363, 695, 711, 914, 995, 1569
TscAI CASTG 1 cut(s) 987
TseFI GTSAC 4 cut(s) 438, 512, 593, 998
Tsp45I GTSAC 4 cut(s) 438, 512, 593, 998
TspDTI ATGAA 4 cut(s) 98, 954, 1174, 1448
TspGWI ACGGA 1 cut(s) 1061
TspRI CASTG 1 cut(s) 987
Vha464I CTTAAG 1 cut(s) 362
VpaK11BI GGWCC 1 cut(s) 313
XapI RAATTY 4 cut(s) 103, 288, 1348, 1358
XceI RCATGY 1 cut(s) 922
XmnI GAANNNNTTC 5 cut(s) 63, 302, 476, 1181, 1455
XspI CTAG 5 cut(s) 579, 1020, 1095, 1101, 1107
ZrmI AGTACT 1 cut(s) 379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.