Rorug03G0006000

ZINC FINGER protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0014758
Physical Location & Seq
Reverse (-)
452042 .. 452798
757 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0006000.1

Sequence Viewer

Length: 330 bp
ATGACGGGGAAGGCGAAGCCGAAGAAGCACACGGCGAAGGAGATCCAGGCGAAGATCGACGCGGCGACGACGAATCGCGGTGGCGGGAAGGCCGGAATCGCTGACCGGACCGGGCAGGACAAAGGCGGACACGCCAAGTACGAGTGCCCTCACTGCAAGATAACGGCGCCGGACGTCAAGTCGATGCAGATTCACCACGACTCGAAGCATCCGAAGATTCCCTTCGACGAGGAGAAGATTGTGAATCGCCACGCCAGCACCAGCACCAGCACCAGCCAGGCTCCAGCTGAAAAGCCCAAGCCCGGCGTTCGCGGCAGCCTCAAGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C2H2 zf-C2H2_jaz

Protein Analysis

109

Amino Acids

11.69

Weight (kDa)

9.88

Isoelectric Point (pI)

19.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014758)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g06270 FvH4_6g06270
malus_domestica MD04G1203000.v1.1 MD12G1216800.v1.1
prunus_persica Prupe.6G323100_v2.0.a1
pyrus_communis pycom04g17930 pycom12g20230
rosa_chinensis RchiOBHm_Chr3g0455311
rosa_laevigata RLG00000025371
rosa_roxburghii Rroxscaffold_6G00424390
rosa_rugosa Rorug03G0006000 Rorug03G0006100
rosa_samantha Rh3AG065900 Rh3BG068000 Rh3CG066400 Rh3DG068000
rosa_wichuraiana Rw3G005190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 177
AccB1I GGYRCC 1 cut(s) 166
AccII CGCG 3 cut(s) 62, 78, 312
AciI CCGC 5 cut(s) 62, 78, 84, 126, 312
AclWI GGATC 1 cut(s) 37
AcyI GRCGYC 2 cut(s) 167, 174
AfaI GTAC 1 cut(s) 140
AfiI CCNNNNNNNGG 1 cut(s) 302
AhdI GACNNNNNGTC 1 cut(s) 178
AjnI CCWGG 2 cut(s) 45, 276
AluBI AGCT 1 cut(s) 287
AluI AGCT 1 cut(s) 287
AlwI GGATC 1 cut(s) 37
AoxI GGCC 1 cut(s) 90
ApeKI GCWGC 1 cut(s) 315
AspLEI GCGC 1 cut(s) 169
AspS9I GGNCC 1 cut(s) 108
AsuC2I CCSGG 2 cut(s) 112, 303
AsuHPI GGTGA 1 cut(s) 185
AvaII GGWCC 1 cut(s) 108
BaeGI GKGCMC 1 cut(s) 149
BanI GGYRCC 1 cut(s) 166
BceAI ACGGC 2 cut(s) 48, 180
BciT130I CCWGG 2 cut(s) 47, 278
BcnI CCSGG 2 cut(s) 112, 303
BfoI RGCGCY 1 cut(s) 170
BisI GCNGC 3 cut(s) 63, 313, 316
BlsI GCNGC 3 cut(s) 64, 314, 317
Bme1390I CCNGG 4 cut(s) 47, 112, 278, 303
Bme18I GGWCC 1 cut(s) 108
BmeRI GACNNNNNGTC 1 cut(s) 178
BmgT120I GGNCC 1 cut(s) 108
BmiI GGNNCC 2 cut(s) 168, 282
BmrFI CCNGG 4 cut(s) 47, 112, 278, 303
BmsI GCATC 2 cut(s) 174, 217
BpmI CTGGAG 1 cut(s) 267
BpuEI CTTGAG 1 cut(s) 305
BpuMI CCSGG 2 cut(s) 112, 303
BsaHI GRCGYC 2 cut(s) 167, 174
BsaWI WCCGGW 1 cut(s) 105
Bsc4I CCNNNNNNNGG 1 cut(s) 302
BseBI CCWGG 2 cut(s) 47, 278
BseGI GGATG 1 cut(s) 208
BseLI CCNNNNNNNGG 1 cut(s) 302
BseRI GAGGAG 1 cut(s) 245
BseSI GKGCMC 1 cut(s) 149
Bsh1236I CGCG 3 cut(s) 62, 78, 312
BshFI GGCC 1 cut(s) 92
BshNI GGYRCC 1 cut(s) 166
BsiSI CCGG 5 cut(s) 93, 106, 111, 170, 303
BslI CCNNNNNNNGG 1 cut(s) 302
BsnI GGCC 1 cut(s) 92
Bsp1286I GDGCHC 1 cut(s) 149
Bsp143I GATC 2 cut(s) 42, 54
BspACI CCGC 5 cut(s) 62, 78, 84, 126, 312
BspANI GGCC 1 cut(s) 92
BspFNI CGCG 3 cut(s) 62, 78, 312
BspLI GGNNCC 2 cut(s) 168, 282
BspPI GGATC 1 cut(s) 37
BspT107I GGYRCC 1 cut(s) 166
BssMI GATC 2 cut(s) 42, 54
BssNI GRCGYC 2 cut(s) 167, 174
Bst2UI CCWGG 2 cut(s) 47, 278
BstACI GRCGYC 2 cut(s) 167, 174
BstC8I GCNNGC 1 cut(s) 256
BstF5I GGATG 1 cut(s) 208
BstFNI CGCG 3 cut(s) 62, 78, 312
BstH2I RGCGCY 1 cut(s) 170
BstHHI GCGC 1 cut(s) 169
BstKTI GATC 2 cut(s) 45, 57
BstMBI GATC 2 cut(s) 42, 54
BstMWI GCNNNNNNNGC 5 cut(s) 25, 98, 153, 255, 312
BstNI CCWGG 2 cut(s) 47, 278
BstSCI CCNGG 4 cut(s) 45, 110, 276, 301
BstSLI GKGCMC 1 cut(s) 149
BstUI CGCG 3 cut(s) 62, 78, 312
BstX2I RGATCY 1 cut(s) 42
BstYI RGATCY 1 cut(s) 42
BsuRI GGCC 1 cut(s) 92
BtsCI GGATG 1 cut(s) 208
BtsI GCAGTG 1 cut(s) 151
BtsIMutI CAGTG 1 cut(s) 151
Cac8I GCNNGC 1 cut(s) 256
CfoI GCGC 1 cut(s) 169
Cfr13I GGNCC 1 cut(s) 108
CpoI CGGWCCG 1 cut(s) 108
CseI GACGC 1 cut(s) 68
Csp6I GTAC 1 cut(s) 139
CspI CGGWCCG 1 cut(s) 108
CviJI RGCY 8 cut(s) 19, 92, 276, 281, 287, 295, 301, 318
CviKI_1 RGCY 8 cut(s) 19, 92, 276, 281, 287, 295, 301, 318
CviQI GTAC 1 cut(s) 139
DinI GGCGCC 1 cut(s) 168
DpnI GATC 2 cut(s) 44, 56
DpnII GATC 2 cut(s) 42, 54
DriI GACNNNNNGTC 1 cut(s) 178
Eam1105I GACNNNNNGTC 1 cut(s) 178
EciI GGCGGA 1 cut(s) 141
Eco47I GGWCC 1 cut(s) 108
EcoRII CCWGG 2 cut(s) 45, 276
EgeI GGCGCC 1 cut(s) 168
EheI GGCGCC 1 cut(s) 168
FalI AAGNNNNNCTT 2 cut(s) 206, 238
FauI CCCGC 1 cut(s) 77
Fnu4HI GCNGC 3 cut(s) 63, 313, 316
FokI GGATG 1 cut(s) 195
Fsp4HI GCNGC 3 cut(s) 63, 313, 316
GlaI GCGC 1 cut(s) 168
GluI GCNGC 3 cut(s) 63, 313, 316
GsuI CTGGAG 1 cut(s) 267
HaeII RGCGCY 1 cut(s) 170
HaeIII GGCC 1 cut(s) 92
HapII CCGG 5 cut(s) 93, 106, 111, 170, 303
HgaI GACGC 1 cut(s) 68
HhaI GCGC 1 cut(s) 169
Hin1I GRCGYC 2 cut(s) 167, 174
Hin6I GCGC 1 cut(s) 167
HinP1I GCGC 1 cut(s) 167
HinfI GANTC 6 cut(s) 73, 96, 190, 200, 217, 244
HpaII CCGG 5 cut(s) 93, 106, 111, 170, 303
HphI GGTGA 1 cut(s) 185
Hpy188I TCNGA 1 cut(s) 213
Hpy188III TCNNGA 1 cut(s) 322
Hpy99I CGWCG 4 cut(s) 62, 70, 73, 230
HpyAV CCTTC 4 cut(s) 4, 31, 82, 232
HpyCH4IV ACGT 1 cut(s) 174
HpyCH4V TGCA 2 cut(s) 156, 187
HpyF10VI GCNNNNNNNGC 5 cut(s) 25, 98, 153, 255, 312
HpySE526I ACGT 1 cut(s) 174
Hsp92I GRCGYC 2 cut(s) 167, 174
HspAI GCGC 1 cut(s) 167
KasI GGCGCC 1 cut(s) 166
Kzo9I GATC 2 cut(s) 42, 54
LmnI GCTCC 1 cut(s) 286
LweI GCATC 2 cut(s) 174, 217
MaeII ACGT 1 cut(s) 174
MalI GATC 2 cut(s) 44, 56
MboI GATC 2 cut(s) 42, 54
MboII GAAGA 4 cut(s) 34, 64, 226, 247
MflI RGATCY 1 cut(s) 42
MhlI GDGCHC 1 cut(s) 149
Mly113I GGCGCC 1 cut(s) 167
MlyI GAGTC 1 cut(s) 194
MnlI CCTC 3 cut(s) 159, 223, 329
MspA1I CMGCKG 1 cut(s) 287
MspI CCGG 5 cut(s) 93, 106, 111, 170, 303
MspR9I CCNGG 4 cut(s) 47, 112, 278, 303
MvaI CCWGG 2 cut(s) 47, 278
MvnI CGCG 3 cut(s) 62, 78, 312
MwoI GCNNNNNNNGC 5 cut(s) 25, 98, 153, 255, 312
NarI GGCGCC 1 cut(s) 167
NciI CCSGG 2 cut(s) 112, 303
NdeII GATC 2 cut(s) 42, 54
NlaIV GGNNCC 2 cut(s) 168, 282
PcsI WCGNNNNNNNCGW 3 cut(s) 11, 138, 209
PfeI GAWTC 5 cut(s) 73, 96, 190, 217, 244
PkrI GCNGC 3 cut(s) 64, 314, 317
PleI GAGTC 1 cut(s) 194
PluTI GGCGCC 1 cut(s) 170
PpsI GAGTC 1 cut(s) 194
Psp6I CCWGG 2 cut(s) 45, 276
PspGI CCWGG 2 cut(s) 45, 276
PspN4I GGNNCC 2 cut(s) 168, 282
PspPI GGNCC 1 cut(s) 108
PsuI RGATCY 1 cut(s) 42
PvuII CAGCTG 1 cut(s) 287
RsaI GTAC 1 cut(s) 140
RsaNI GTAC 1 cut(s) 139
Rsr2I CGGWCCG 1 cut(s) 108
RsrII CGGWCCG 1 cut(s) 108
SatI GCNGC 3 cut(s) 63, 313, 316
Sau3AI GATC 2 cut(s) 42, 54
Sau96I GGNCC 1 cut(s) 108
SchI GAGTC 1 cut(s) 194
ScrFI CCNGG 4 cut(s) 47, 112, 278, 303
SduI GDGCHC 1 cut(s) 149
SetI ASST 2 cut(s) 177, 289
SfaNI GCATC 2 cut(s) 174, 217
SfoI GGCGCC 1 cut(s) 168
SinI GGWCC 1 cut(s) 108
SmlI CTYRAG 1 cut(s) 320
SmoI CTYRAG 1 cut(s) 320
SsiI CCGC 5 cut(s) 62, 78, 84, 126, 312
SspDI GGCGCC 1 cut(s) 166
StyD4I CCNGG 4 cut(s) 45, 110, 276, 301
TaiI ACGT 1 cut(s) 177
TaqI TCGA 4 cut(s) 57, 182, 203, 225
TauI GCSGC 2 cut(s) 65, 315
TfiI GAWTC 5 cut(s) 73, 96, 190, 217, 244
TscAI CASTG 1 cut(s) 158
TseI GCWGC 1 cut(s) 315
TspRI CASTG 1 cut(s) 158
VpaK11BI GGWCC 1 cut(s) 108
ZraI GACGTC 1 cut(s) 175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.