Rh3DG068000

ZINC FINGER protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0014758
Physical Location & Seq
Forward (+)
4599031 .. 4602985
3955 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG068000.1

Sequence Viewer

Length: 1302 bp
ATGGCAACAAACCGATTCGTGTGCGAAATTTGCAAGAAAGGGTTCCAAAGGGACCAAAACCTCCAATTGCACCGAAGAGGCCACAACTTGCCATGGAAGCTTAAGCAAAGATCAAGCACCGAAATCCGGAAGCGGGTCTACATCTGCCCCGAACCCTCATGCGTCCACCATGAACCCTCCCGGGCACTGGGAGATCTCACGGGGATCAAGAAGCACTTTTGCCGGAAGCACGGTGAAAAAAAGTGGAAATGTGACAAGTGCTCGAAGAAGTATGCAGTGCAATCGGACTGGAAAGCTCATTCTAAGACCTGTGGTACTAGAGAATACAAATGTGACTGTGGAACCGTCTTCTCCAGAAGAGATAGCTTTATCACCCACAGAGCTTTCTGTGATGCCATAGCTGAAGAAAACAAGACACCAGTTCAAGGACAAGGAGTACTAATGTCCAACAACATGGGACAACAGAACTTACAACAAGGCGGCCAACTAGTTTCCGGCGGCGAGCTCATGATCCCGGCCTCAATACCGATGAGTAACACCGAAACAGCTGCCACCATCCCATCAACAAGAAGTAGCAATACATCTGATCACTTTGATCATTTCGACACCAAAAATCCTAATTTAACCCTACTGCCCCAAGGAGTACCAGCAAACATGTTGCCATCATCCAGATGCGGCCTGAACAACAATTCATTGTCATCACCAACAAGTAGTGCACTGTTTCATAATCACCACGGGCACCAAGTACTCCCCAGCTCAATCTCCGGCCACTTGTCCGCCACCGAGTTGCTGCAGAAAGCAGCTCAAATGGGTGCAACAATGAGCAGCAATAATTCTAGTGGTATGAGCATGGCACCCTCAACATATGGTGACTTTCCTAGCTACGTGAATAACCAGTTCATGCAGCACAAAGATGGTAACAGTATTCCGGTACAAGAGACCTCGTCGCAGTTTTTTGGTGCTAGTAATGGGAATATGGGAATGTTCAGTGGGCTATTATTTGATCAGAGCAATGGGGTGTTGATGAAGAACATGGAGCAAAGCGTTAATGGCAGGAATAATAATAATAACAATAACAATGCTAGTAATGGTTTCAGCTTGCGTGGTAAAAATGTGAGTAGCGGAGGAGATACGATGACCGTGGACTTTCTGGGGATTGGAAGAGGAAGAGGAGGAGGAGGTAATAGATCAGAAACTTTTCATGATCATCAACAAAGACAAGTACTGCATGATGAGCATCAGCGACAAAATAAGCAGGAAGATGATGATCAATTAATGGGGTTTGGTTGGAGCTGGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C2H2 zf-C2H2_jaz

Protein Analysis

433

Amino Acids

47.85

Weight (kDa)

9.03

Isoelectric Point (pI)

50.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2H2-2nd_BIRD-IDD PF22996 43 - 77 3.3e-22 BIRD-IDD transcription factor, second C2H2 zinc finger
C2CH-3rd_BIRD-IDD PF22995 81 - 105 2.2e-14 BIRD-IDD transcription factor, third C2HC zinc finger
C2CH-4th_BIRD-IDD PF22992 108 - 139 3.1e-22 BIRD-IDD transcription factor, fourth C2HC zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014758)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g06270 FvH4_6g06270
malus_domestica MD04G1203000.v1.1 MD12G1216800.v1.1
prunus_persica Prupe.6G323100_v2.0.a1
pyrus_communis pycom04g17930 pycom12g20230
rosa_chinensis RchiOBHm_Chr3g0455311
rosa_laevigata RLG00000025371
rosa_roxburghii Rroxscaffold_6G00424390
rosa_rugosa Rorug03G0006000 Rorug03G0006100
rosa_samantha Rh3AG065900 Rh3BG068000 Rh3CG066400 Rh3DG068000
rosa_wichuraiana Rw3G005190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 738, 853
AccI GTMKAC 1 cut(s) 138
AccIII TCCGGA 1 cut(s) 126
AciI CCGC 6 cut(s) 133, 480, 498, 675, 777, 1122
AclWI GGATC 2 cut(s) 212, 505
AcoI YGGCCR 2 cut(s) 481, 766
AcsI RAATTY 1 cut(s) 27
AcuI CTGAAG 1 cut(s) 423
AfaI GTAC 6 cut(s) 316, 438, 645, 747, 933, 1224
AfiI CCNNNNNNNGG 4 cut(s) 126, 133, 187, 425
AflII CTTAAG 1 cut(s) 101
AflIII ACRYGT 1 cut(s) 654
AgsI TTSAA 1 cut(s) 425
AhlI ACTAGT 1 cut(s) 487
Alw21I GWGCWC 3 cut(s) 263, 507, 718
Alw26I GTCTC 1 cut(s) 932
Alw44I GTGCAC 1 cut(s) 714
AlwI GGATC 2 cut(s) 212, 505
Ama87I CYCGRG 1 cut(s) 180
Aor13HI TCCGGA 1 cut(s) 126
AoxI GGCC 5 cut(s) 79, 481, 516, 676, 766
ApaLI GTGCAC 1 cut(s) 714
ApeKI GCWGC 5 cut(s) 548, 790, 800, 825, 904
ApoI RAATTY 1 cut(s) 27
AseI ATTAAT 1 cut(s) 1274
Asp700I GAANNNNTTC 2 cut(s) 41, 1197
AspS9I GGNCC 1 cut(s) 52
AsuC2I CCSGG 3 cut(s) 181, 182, 515
AsuHPI GGTGA 5 cut(s) 245, 364, 693, 722, 881
AvaI CYCGRG 1 cut(s) 180
AvaII GGWCC 1 cut(s) 52
BaeGI GKGCMC 3 cut(s) 187, 718, 741
BanI GGYRCC 2 cut(s) 738, 853
BanII GRGCYC 1 cut(s) 507
BarI GAAGNNNNNNTAC 4 cut(s) 122, 154, 562, 594
BbsI GAAGAC 1 cut(s) 340
Bbv12I GWGCWC 3 cut(s) 263, 507, 718
BbvI GCAGC 5 cut(s) 535, 777, 812, 837, 916
BccI CCATC 4 cut(s) 563, 568, 670, 908
BcgI CGANNNNNNTGC 5 cut(s) 37, 264, 298, 530, 564
BclI TGATCA 5 cut(s) 586, 595, 1003, 1204, 1267
BcnI CCSGG 3 cut(s) 181, 182, 515
BcoDI GTCTC 1 cut(s) 932
BcuI ACTAGT 1 cut(s) 487
BfaI CTAG 6 cut(s) 318, 488, 837, 879, 963, 1083
BfmI CTRYAG 1 cut(s) 791
BfrI CTTAAG 1 cut(s) 101
BglII AGATCT 1 cut(s) 193
BisI GCNGC 8 cut(s) 481, 499, 549, 676, 791, 801, 826, 905
BlsI GCNGC 8 cut(s) 482, 500, 550, 677, 792, 802, 827, 906
BmcAI AGTACT 3 cut(s) 438, 747, 1224
Bme1390I CCNGG 3 cut(s) 181, 182, 515
Bme18I GGWCC 1 cut(s) 52
BmeT110I CYCGRG 1 cut(s) 180
BmgT120I GGNCC 1 cut(s) 52
BmiI GGNNCC 5 cut(s) 44, 53, 343, 740, 855
BmrFI CCNGG 3 cut(s) 181, 182, 515
BmrI ACTGGG 1 cut(s) 197
BmsI GCATC 3 cut(s) 382, 662, 1246
BmuI ACTGGG 1 cut(s) 197
BpiI GAAGAC 1 cut(s) 340
BpmI CTGGAG 1 cut(s) 337
BpuMI CCSGG 3 cut(s) 181, 182, 515
BsaAI YACGTR 1 cut(s) 886
BsaBI GATNNNNATC 2 cut(s) 1236, 1266
BsaI GGTCTC 1 cut(s) 932
BsaJI CCNNGG 5 cut(s) 92, 180, 637, 733, 1140
BsaWI WCCGGW 2 cut(s) 126, 928
BsaXI ACNNNNNCTCC 1 cut(s) 1282
Bsc4I CCNNNNNNNGG 4 cut(s) 126, 133, 187, 425
Bse1I ACTGG 4 cut(s) 192, 293, 419, 895
Bse3DI GCAATG 1 cut(s) 1018
Bse8I GATNNNNATC 2 cut(s) 1236, 1266
BseAI TCCGGA 1 cut(s) 126
BseDI CCNNGG 5 cut(s) 92, 180, 637, 733, 1140
BseGI GGATG 2 cut(s) 555, 665
BseJI GATNNNNATC 2 cut(s) 1236, 1266
BseLI CCNNNNNNNGG 4 cut(s) 126, 133, 187, 425
BseMI GCAATG 1 cut(s) 1018
BseNI ACTGG 4 cut(s) 192, 293, 419, 895
BseRI GAGGAG 4 cut(s) 1140, 1185, 1188, 1191
BseSI GKGCMC 3 cut(s) 187, 718, 741
BseXI GCAGC 5 cut(s) 535, 777, 812, 837, 916
BseYI CCCAGC 1 cut(s) 752
BshFI GGCC 5 cut(s) 81, 483, 518, 678, 768
BshNI GGYRCC 2 cut(s) 738, 853
BsiHKAI GWGCWC 3 cut(s) 263, 507, 718
BsiHKCI CYCGRG 1 cut(s) 180
BsiSI CCGG 7 cut(s) 127, 181, 223, 495, 515, 765, 929
BslFI GGGAC 2 cut(s) 65, 471
BslI CCNNNNNNNGG 4 cut(s) 126, 133, 187, 425
BsmAI GTCTC 1 cut(s) 932
BsmFI GGGAC 2 cut(s) 65, 471
BsnI GGCC 5 cut(s) 81, 483, 518, 678, 768
Bso31I GGTCTC 1 cut(s) 932
BsoBI CYCGRG 1 cut(s) 180
Bsp1286I GDGCHC 5 cut(s) 187, 263, 507, 718, 741
Bsp13I TCCGGA 1 cut(s) 126
Bsp19I CCATGG 1 cut(s) 92
BspACI CCGC 6 cut(s) 133, 480, 498, 675, 777, 1122
BspANI GGCC 5 cut(s) 81, 483, 518, 678, 768
BspEI TCCGGA 1 cut(s) 126
BspHI TCATGA 2 cut(s) 507, 1201
BspLI GGNNCC 5 cut(s) 44, 53, 343, 740, 855
BspMAI CTGCAG 1 cut(s) 795
BspPI GGATC 2 cut(s) 212, 505
BspT107I GGYRCC 2 cut(s) 738, 853
BspTI CTTAAG 1 cut(s) 101
BspTNI GGTCTC 1 cut(s) 932
BsrDI GCAATG 1 cut(s) 1018
BsrI ACTGG 4 cut(s) 192, 293, 419, 895
BssECI CCNNGG 5 cut(s) 92, 180, 637, 733, 1140
BssT1I CCWWGG 2 cut(s) 92, 637
Bst4CI ACNGT 6 cut(s) 233, 338, 346, 720, 923, 1141
Bst6I CTCTTC 4 cut(s) 70, 352, 1156, 1162
BstAFI CTTAAG 1 cut(s) 101
BstBAI YACGTR 1 cut(s) 886
BstC8I GCNNGC 2 cut(s) 503, 1100
BstDEI CTNAG 1 cut(s) 303
BstDSI CCRYGG 3 cut(s) 92, 733, 1140
BstF5I GGATG 2 cut(s) 555, 665
BstMAI GTCTC 1 cut(s) 932
BstMWI GCNNNNNNNGC 4 cut(s) 30, 97, 1050, 1234
BstNSI RCATGY 1 cut(s) 658
BstSCI CCNGG 3 cut(s) 179, 180, 513
BstSFI CTRYAG 1 cut(s) 791
BstSLI GKGCMC 3 cut(s) 187, 718, 741
BstV1I GCAGC 5 cut(s) 535, 777, 812, 837, 916
BstV2I GAAGAC 1 cut(s) 340
BstX2I RGATCY 1 cut(s) 193
BstXI CCANNNNNNTGG 1 cut(s) 454
BstYI RGATCY 1 cut(s) 193
BsuRI GGCC 5 cut(s) 81, 483, 518, 678, 768
BtgI CCRYGG 3 cut(s) 92, 733, 1140
BtsCI GGATG 2 cut(s) 555, 665
BtsI GCAGTG 1 cut(s) 282
BtsIMutI CAGTG 4 cut(s) 185, 282, 716, 994
Cac8I GCNNGC 2 cut(s) 503, 1100
CciI TCATGA 2 cut(s) 507, 1201
Cfr13I GGNCC 1 cut(s) 52
Cfr9I CCCGGG 1 cut(s) 180
CseI GACGC 1 cut(s) 151
Csp6I GTAC 6 cut(s) 315, 437, 644, 746, 932, 1223
CviQI GTAC 6 cut(s) 315, 437, 644, 746, 932, 1223
DdeI CTNAG 1 cut(s) 303
EaeI YGGCCR 2 cut(s) 481, 766
Eam1104I CTCTTC 4 cut(s) 70, 352, 1156, 1162
EarI CTCTTC 4 cut(s) 70, 352, 1156, 1162
EciI GGCGGA 1 cut(s) 766
Ecl136II GAGCTC 1 cut(s) 505
Eco130I CCWWGG 2 cut(s) 92, 637
Eco24I GRGCYC 1 cut(s) 507
Eco31I GGTCTC 1 cut(s) 932
Eco47I GGWCC 1 cut(s) 52
Eco53kI GAGCTC 1 cut(s) 505
Eco57I CTGAAG 1 cut(s) 423
Eco88I CYCGRG 1 cut(s) 180
EcoICRI GAGCTC 1 cut(s) 505
EcoT14I CCWWGG 2 cut(s) 92, 637
EcoT38I GRGCYC 1 cut(s) 507
ErhI CCWWGG 2 cut(s) 92, 637
FalI AAGNNNNNCTT 2 cut(s) 200, 232
FaqI GGGAC 2 cut(s) 65, 471
FauI CCCGC 1 cut(s) 126
FauNDI CATATG 1 cut(s) 865
FbaI TGATCA 5 cut(s) 586, 595, 1003, 1204, 1267
FblI GTMKAC 1 cut(s) 138
Fnu4HI GCNGC 8 cut(s) 481, 499, 549, 676, 791, 801, 826, 905
FokI GGATG 2 cut(s) 542, 652
FriOI GRGCYC 1 cut(s) 507
Fsp4HI GCNGC 8 cut(s) 481, 499, 549, 676, 791, 801, 826, 905
FspBI CTAG 6 cut(s) 318, 488, 837, 879, 963, 1083
GluI GCNGC 8 cut(s) 481, 499, 549, 676, 791, 801, 826, 905
GsaI CCCAGC 1 cut(s) 756
GsuI CTGGAG 1 cut(s) 337
HaeIII GGCC 5 cut(s) 81, 483, 518, 678, 768
HapII CCGG 7 cut(s) 127, 181, 223, 495, 515, 765, 929
HgaI GACGC 1 cut(s) 151
HindIII AAGCTT 1 cut(s) 98
HinfI GANTC 1 cut(s) 15
HpaII CCGG 7 cut(s) 127, 181, 223, 495, 515, 765, 929
HphI GGTGA 5 cut(s) 245, 364, 693, 722, 881
Hpy166II GTNNAC 4 cut(s) 139, 166, 716, 1144
Hpy188I TCNGA 4 cut(s) 286, 586, 1008, 1192
Hpy188III TCNNGA 6 cut(s) 127, 208, 354, 508, 669, 1202
Hpy8I GTNNAC 4 cut(s) 139, 166, 716, 1144
Hpy99I CGWCG 1 cut(s) 949
HpyCH4III ACNGT 6 cut(s) 233, 338, 346, 720, 923, 1141
HpyCH4IV ACGT 1 cut(s) 885
HpyCH4V TGCA 9 cut(s) 33, 70, 275, 280, 716, 793, 815, 904, 1228
HpyF10VI GCNNNNNNNGC 4 cut(s) 30, 97, 1050, 1234
HpyF3I CTNAG 1 cut(s) 303
HpySE526I ACGT 1 cut(s) 885
Kpn2I TCCGGA 1 cut(s) 126
Ksp22I TGATCA 5 cut(s) 586, 595, 1003, 1204, 1267
LmnI GCTCC 2 cut(s) 1036, 1290
Lsp1109I GCAGC 5 cut(s) 535, 777, 812, 837, 916
LweI GCATC 3 cut(s) 382, 662, 1246
MaeI CTAG 6 cut(s) 318, 488, 837, 879, 963, 1083
MaeII ACGT 1 cut(s) 885
MaeIII GTNAC 5 cut(s) 251, 332, 533, 869, 917
MboII GAAGA 9 cut(s) 87, 277, 340, 369, 416, 1039, 1173, 1179, 1271
MfeI CAATTG 1 cut(s) 65
MflI RGATCY 1 cut(s) 193
MhlI GDGCHC 5 cut(s) 187, 263, 507, 718, 741
MluCI AATT 6 cut(s) 27, 65, 619, 688, 832, 1271
MmeI TCCRAC 2 cut(s) 471, 1268
MroI TCCGGA 1 cut(s) 126
MroXI GAANNNNTTC 2 cut(s) 41, 1197
MseI TTAA 4 cut(s) 102, 623, 1047, 1274
MslI CAYNNNNRTG 2 cut(s) 670, 912
MspA1I CMGCKG 1 cut(s) 548
MspCI CTTAAG 1 cut(s) 101
MspI CCGG 7 cut(s) 127, 181, 223, 495, 515, 765, 929
MspR9I CCNGG 3 cut(s) 181, 182, 515
MunI CAATTG 1 cut(s) 65
MwoI GCNNNNNNNGC 4 cut(s) 30, 97, 1050, 1234
NciI CCSGG 3 cut(s) 181, 182, 515
NcoI CCATGG 1 cut(s) 92
NdeI CATATG 1 cut(s) 865
NlaIV GGNNCC 5 cut(s) 44, 53, 343, 740, 855
NmuCI GTSAC 3 cut(s) 251, 332, 869
NspI RCATGY 1 cut(s) 658
PagI TCATGA 2 cut(s) 507, 1201
PciI ACATGT 1 cut(s) 654
PdmI GAANNNNTTC 2 cut(s) 41, 1197
PfeI GAWTC 1 cut(s) 15
PflFI GACNNNGTC 1 cut(s) 943
PkrI GCNGC 8 cut(s) 482, 500, 550, 677, 792, 802, 827, 906
Ppu21I YACGTR 1 cut(s) 886
PscI ACATGT 1 cut(s) 654
PshBI ATTAAT 1 cut(s) 1274
Psp124BI GAGCTC 1 cut(s) 507
PspFI CCCAGC 1 cut(s) 752
PspN4I GGNNCC 5 cut(s) 44, 53, 343, 740, 855
PspPI GGNCC 1 cut(s) 52
PstI CTGCAG 1 cut(s) 795
PsuI RGATCY 1 cut(s) 193
PsyI GACNNNGTC 1 cut(s) 943
PvuII CAGCTG 1 cut(s) 548
RsaI GTAC 6 cut(s) 316, 438, 645, 747, 933, 1224
RsaNI GTAC 6 cut(s) 315, 437, 644, 746, 932, 1223
RseI CAYNNNNRTG 2 cut(s) 670, 912
SacI GAGCTC 1 cut(s) 507
SaqAI TTAA 4 cut(s) 102, 623, 1047, 1274
SatI GCNGC 8 cut(s) 481, 499, 549, 676, 791, 801, 826, 905
Sau96I GGNCC 1 cut(s) 52
ScaI AGTACT 3 cut(s) 438, 747, 1224
ScrFI CCNGG 3 cut(s) 181, 182, 515
SduI GDGCHC 5 cut(s) 187, 263, 507, 718, 741
SfaNI GCATC 3 cut(s) 382, 662, 1246
SfcI CTRYAG 1 cut(s) 791
SinI GGWCC 1 cut(s) 52
SmaI CCCGGG 1 cut(s) 182
SmiMI CAYNNNNRTG 2 cut(s) 670, 912
SmlI CTYRAG 1 cut(s) 101
SmoI CTYRAG 1 cut(s) 101
SpeI ACTAGT 1 cut(s) 487
Sse9I AATT 6 cut(s) 27, 65, 619, 688, 832, 1271
SsiI CCGC 6 cut(s) 133, 480, 498, 675, 777, 1122
SspMI CTAG 6 cut(s) 318, 488, 837, 879, 963, 1083
SstI GAGCTC 1 cut(s) 507
StyD4I CCNGG 3 cut(s) 179, 180, 513
StyI CCWWGG 2 cut(s) 92, 637
TaaI ACNGT 6 cut(s) 233, 338, 346, 720, 923, 1141
TaiI ACGT 1 cut(s) 888
TaqI TCGA 2 cut(s) 263, 603
TasI AATT 6 cut(s) 27, 65, 619, 688, 832, 1271
TatI WGTACW 3 cut(s) 436, 745, 1222
TauI GCSGC 3 cut(s) 483, 501, 678
TfiI GAWTC 1 cut(s) 15
Tru1I TTAA 4 cut(s) 102, 623, 1047, 1274
Tru9I TTAA 4 cut(s) 102, 623, 1047, 1274
TscAI CASTG 4 cut(s) 192, 282, 723, 994
TseFI GTSAC 3 cut(s) 251, 332, 869
TseI GCWGC 5 cut(s) 548, 790, 800, 825, 904
Tsp45I GTSAC 3 cut(s) 251, 332, 869
TspDTI ATGAA 6 cut(s) 186, 681, 713, 889, 1040, 1190
TspMI CCCGGG 1 cut(s) 180
TspRI CASTG 4 cut(s) 192, 282, 723, 994
Tth111I GACNNNGTC 1 cut(s) 943
Vha464I CTTAAG 1 cut(s) 101
VneI GTGCAC 1 cut(s) 714
VpaK11BI GGWCC 1 cut(s) 52
VspI ATTAAT 1 cut(s) 1274
XapI RAATTY 1 cut(s) 27
XceI RCATGY 1 cut(s) 658
XmaI CCCGGG 1 cut(s) 180
XmiI GTMKAC 1 cut(s) 138
XmnI GAANNNNTTC 2 cut(s) 41, 1197
XspI CTAG 6 cut(s) 318, 488, 837, 879, 963, 1083
ZrmI AGTACT 3 cut(s) 438, 747, 1224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.