Bifunctional 3-dehydroquinate dehydratase shikimate dehydrogenase, chloroplastic-like
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_6g04670 FvH4_6g04670 FvH4_6g04670 |
| malus_domestica | MD04G1213800.v1.1 MD12G1228800.v1.1 |
| prunus_persica | Prupe.6G334000_v2.0.a1 Prupe.6G334000_v2.0.a1 |
| pyrus_communis | pycom04g18930 pycom12g21340 |
| rosa_chinensis | RchiOBHm_Chr3g0453141 |
| rosa_laevigata | RLG00000025534 |
| rosa_multiflora | Rmu_sc0007132.1_g000006 Rmu_sc0013481.1_g000002 |
| rosa_roxburghii | Rroxscaffold_6G00430200 |
| rosa_rugosa | Rorug02G0646800 |
| rosa_samantha | Rh3AG049400 Rh3BG050600 Rh3CG050800 Rh3DG051400 |
| rosa_wichuraiana | Rw3G003790 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 349, 1561 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1031, 1322 |
| AccII | CGCG | 1 cut(s) | 627 |
| AciI | CCGC | 3 cut(s) | 15, 95, 1077 |
| AclWI | GGATC | 2 cut(s) | 42, 971 |
| AcoI | YGGCCR | 1 cut(s) | 697 |
| AcsI | RAATTY | 5 cut(s) | 64, 162, 371, 849, 1306 |
| AcuI | CTGAAG | 1 cut(s) | 172 |
| AcvI | CACGTG | 1 cut(s) | 551 |
| AfaI | GTAC | 7 cut(s) | 564, 630, 667, 731, 765, 1527, 1551 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 390, 590, 1031, 1318, 1322 |
| AflIII | ACRYGT | 2 cut(s) | 550, 625 |
| AhlI | ACTAGT | 1 cut(s) | 565 |
| AjnI | CCWGG | 1 cut(s) | 694 |
| AleI | CACNNNNGTG | 1 cut(s) | 1441 |
| AluBI | AGCT | 7 cut(s) | 491, 500, 692, 1166, 1283, 1397, 1484 |
| AluI | AGCT | 7 cut(s) | 491, 500, 692, 1166, 1283, 1397, 1484 |
| Alw26I | GTCTC | 2 cut(s) | 1015, 1495 |
| AlwI | GGATC | 2 cut(s) | 42, 971 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 115, 695 |
| AoxI | GGCC | 3 cut(s) | 254, 697, 984 |
| ApeKI | GCWGC | 2 cut(s) | 821, 1481 |
| ApoI | RAATTY | 5 cut(s) | 64, 162, 371, 849, 1306 |
| AseI | ATTAAT | 2 cut(s) | 837, 1040 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 64, 185, 1092 |
| AspLEI | GCGC | 1 cut(s) | 85 |
| AspS9I | GGNCC | 2 cut(s) | 17, 118 |
| AsuC2I | CCSGG | 1 cut(s) | 908 |
| AsuHPI | GGTGA | 4 cut(s) | 296, 479, 529, 1168 |
| AvaII | GGWCC | 2 cut(s) | 17, 118 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 747, 780 |
| BalI | TGGCCA | 1 cut(s) | 699 |
| BbrPI | CACGTG | 1 cut(s) | 551 |
| BbsI | GAAGAC | 1 cut(s) | 449 |
| BbvI | GCAGC | 2 cut(s) | 833, 1493 |
| BccI | CCATC | 6 cut(s) | 457, 1025, 1153, 1316, 1320, 1321 |
| BciT130I | CCWGG | 1 cut(s) | 696 |
| BciVI | GTATCC | 3 cut(s) | 477, 748, 914 |
| BclI | TGATCA | 4 cut(s) | 106, 1014, 1372, 1569 |
| BcnI | CCSGG | 1 cut(s) | 908 |
| BcoDI | GTCTC | 2 cut(s) | 1015, 1495 |
| BcuI | ACTAGT | 1 cut(s) | 565 |
| BfaI | CTAG | 2 cut(s) | 317, 566 |
| BfmI | CTRYAG | 1 cut(s) | 356 |
| BfuAI | ACCTGC | 2 cut(s) | 349, 1561 |
| BfuI | GTATCC | 3 cut(s) | 477, 748, 914 |
| BglII | AGATCT | 2 cut(s) | 202, 715 |
| BisI | GCNGC | 3 cut(s) | 822, 1077, 1482 |
| BlsI | GCNGC | 3 cut(s) | 823, 1078, 1483 |
| BmcAI | AGTACT | 1 cut(s) | 564 |
| Bme1390I | CCNGG | 2 cut(s) | 696, 908 |
| Bme18I | GGWCC | 2 cut(s) | 17, 118 |
| BmgT120I | GGNCC | 2 cut(s) | 17, 118 |
| BmiI | GGNNCC | 1 cut(s) | 1129 |
| BmrFI | CCNGG | 2 cut(s) | 696, 908 |
| BmsI | GCATC | 4 cut(s) | 102, 295, 322, 1414 |
| BpiI | GAAGAC | 1 cut(s) | 449 |
| BpmI | CTGGAG | 3 cut(s) | 516, 699, 1497 |
| Bpu10I | CCTNAGC | 1 cut(s) | 11 |
| BpuEI | CTTGAG | 1 cut(s) | 561 |
| BpuMI | CCSGG | 1 cut(s) | 908 |
| Bsa29I | ATCGAT | 1 cut(s) | 975 |
| BsaAI | YACGTR | 1 cut(s) | 551 |
| BsaI | GGTCTC | 2 cut(s) | 1015, 1495 |
| BsaJI | CCNNGG | 5 cut(s) | 321, 456, 906, 987, 1251 |
| BsaWI | WCCGGW | 1 cut(s) | 1544 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1203, 1233, 1470, 1500 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 390, 590, 1031, 1318, 1322 |
| Bse118I | RCCGGY | 1 cut(s) | 1139 |
| Bse1I | ACTGG | 2 cut(s) | 86, 499 |
| BseBI | CCWGG | 1 cut(s) | 696 |
| BseCI | ATCGAT | 1 cut(s) | 975 |
| BseDI | CCNNGG | 5 cut(s) | 321, 456, 906, 987, 1251 |
| BseGI | GGATG | 5 cut(s) | 449, 1312, 1327, 1332, 1582 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 390, 590, 1031, 1318, 1322 |
| BseNI | ACTGG | 2 cut(s) | 86, 499 |
| BseRI | GAGGAG | 2 cut(s) | 1290, 1499 |
| BseXI | GCAGC | 2 cut(s) | 833, 1493 |
| BsgI | GTGCAG | 2 cut(s) | 531, 1539 |
| Bsh1236I | CGCG | 1 cut(s) | 627 |
| BshFI | GGCC | 3 cut(s) | 256, 699, 986 |
| BshVI | ATCGAT | 1 cut(s) | 975 |
| BsiSI | CCGG | 3 cut(s) | 908, 1140, 1545 |
| BslFI | GGGAC | 2 cut(s) | 566, 1510 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 390, 590, 1031, 1318, 1322 |
| BsmAI | GTCTC | 2 cut(s) | 1015, 1495 |
| BsmFI | GGGAC | 2 cut(s) | 566, 1510 |
| BsmI | GAATGC | 2 cut(s) | 571, 824 |
| BsnI | GGCC | 3 cut(s) | 256, 699, 986 |
| Bso31I | GGTCTC | 2 cut(s) | 1015, 1495 |
| Bsp1407I | TGTACA | 2 cut(s) | 729, 1525 |
| Bsp19I | CCATGG | 1 cut(s) | 321 |
| BspACI | CCGC | 3 cut(s) | 15, 95, 1077 |
| BspANI | GGCC | 3 cut(s) | 256, 699, 986 |
| BspDI | ATCGAT | 1 cut(s) | 975 |
| BspFNI | CGCG | 1 cut(s) | 627 |
| BspLI | GGNNCC | 1 cut(s) | 1129 |
| BspMAI | CTGCAG | 1 cut(s) | 360 |
| BspMI | ACCTGC | 2 cut(s) | 349, 1561 |
| BspPI | GGATC | 2 cut(s) | 42, 971 |
| BspTNI | GGTCTC | 2 cut(s) | 1015, 1495 |
| BsrFI | RCCGGY | 1 cut(s) | 1139 |
| BsrGI | TGTACA | 2 cut(s) | 729, 1525 |
| BsrI | ACTGG | 2 cut(s) | 86, 499 |
| BssAI | RCCGGY | 1 cut(s) | 1139 |
| BssECI | CCNNGG | 5 cut(s) | 321, 456, 906, 987, 1251 |
| BssT1I | CCWWGG | 3 cut(s) | 321, 987, 1251 |
| Bst2UI | CCWGG | 1 cut(s) | 696 |
| Bst4CI | ACNGT | 3 cut(s) | 21, 709, 926 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 524 |
| BstAUI | TGTACA | 2 cut(s) | 729, 1525 |
| BstBAI | YACGTR | 1 cut(s) | 551 |
| BstC8I | GCNNGC | 2 cut(s) | 258, 701 |
| BstDEI | CTNAG | 4 cut(s) | 11, 529, 632, 1440 |
| BstDSI | CCRYGG | 1 cut(s) | 321 |
| BstF5I | GGATG | 5 cut(s) | 449, 1312, 1327, 1332, 1582 |
| BstFNI | CGCG | 1 cut(s) | 627 |
| BstHHI | GCGC | 1 cut(s) | 85 |
| BstMAI | GTCTC | 2 cut(s) | 1015, 1495 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 497, 524, 1076, 1172, 1181 |
| BstNI | CCWGG | 1 cut(s) | 696 |
| BstSCI | CCNGG | 2 cut(s) | 694, 906 |
| BstSFI | CTRYAG | 1 cut(s) | 356 |
| BstUI | CGCG | 1 cut(s) | 627 |
| BstV1I | GCAGC | 2 cut(s) | 833, 1493 |
| BstV2I | GAAGAC | 1 cut(s) | 449 |
| BstX2I | RGATCY | 3 cut(s) | 34, 202, 715 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 328 |
| BstYI | RGATCY | 3 cut(s) | 34, 202, 715 |
| Bsu15I | ATCGAT | 1 cut(s) | 975 |
| BsuI | GTATCC | 3 cut(s) | 477, 748, 914 |
| BsuRI | GGCC | 3 cut(s) | 256, 699, 986 |
| BsuTUI | ATCGAT | 1 cut(s) | 975 |
| BtgI | CCRYGG | 1 cut(s) | 321 |
| BtsCI | GGATG | 5 cut(s) | 449, 1312, 1327, 1332, 1582 |
| BtsI | GCAGTG | 1 cut(s) | 308 |
| BtsIMutI | CAGTG | 1 cut(s) | 308 |
| BveI | ACCTGC | 2 cut(s) | 349, 1561 |
| Cac8I | GCNNGC | 2 cut(s) | 258, 701 |
| CaiI | CAGNNNCTG | 2 cut(s) | 115, 695 |
| CfoI | GCGC | 1 cut(s) | 85 |
| Cfr10I | RCCGGY | 1 cut(s) | 1139 |
| Cfr13I | GGNCC | 2 cut(s) | 17, 118 |
| ClaI | ATCGAT | 1 cut(s) | 975 |
| CpoI | CGGWCCG | 1 cut(s) | 17 |
| Csp6I | GTAC | 7 cut(s) | 563, 629, 666, 730, 764, 1526, 1550 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1333, 1368 |
| CspI | CGGWCCG | 1 cut(s) | 17 |
| CviAII | CATG | 5 cut(s) | 261, 322, 368, 767, 1012 |
| CviQI | GTAC | 7 cut(s) | 563, 629, 666, 730, 764, 1526, 1550 |
| DdeI | CTNAG | 4 cut(s) | 11, 529, 632, 1440 |
| EaeI | YGGCCR | 1 cut(s) | 697 |
| EciI | GGCGGA | 1 cut(s) | 110 |
| Eco130I | CCWWGG | 3 cut(s) | 321, 987, 1251 |
| Eco31I | GGTCTC | 2 cut(s) | 1015, 1495 |
| Eco47I | GGWCC | 2 cut(s) | 17, 118 |
| Eco57I | CTGAAG | 1 cut(s) | 172 |
| Eco72I | CACGTG | 1 cut(s) | 551 |
| EcoRI | GAATTC | 1 cut(s) | 371 |
| EcoRII | CCWGG | 1 cut(s) | 694 |
| EcoT14I | CCWWGG | 3 cut(s) | 321, 987, 1251 |
| ErhI | CCWWGG | 3 cut(s) | 321, 987, 1251 |
| FaeI | CATG | 5 cut(s) | 264, 325, 371, 770, 1015 |
| FaqI | GGGAC | 2 cut(s) | 566, 1510 |
| FatI | CATG | 5 cut(s) | 260, 321, 367, 766, 1011 |
| FauNDI | CATATG | 2 cut(s) | 1192, 1240 |
| FbaI | TGATCA | 4 cut(s) | 106, 1014, 1372, 1569 |
| Fnu4HI | GCNGC | 3 cut(s) | 822, 1077, 1482 |
| FokI | GGATG | 5 cut(s) | 436, 1299, 1334, 1339, 1589 |
| Fsp4HI | GCNGC | 3 cut(s) | 822, 1077, 1482 |
| FspBI | CTAG | 2 cut(s) | 317, 566 |
| GlaI | GCGC | 1 cut(s) | 84 |
| GluI | GCNGC | 3 cut(s) | 822, 1077, 1482 |
| GsuI | CTGGAG | 3 cut(s) | 516, 699, 1497 |
| HaeIII | GGCC | 3 cut(s) | 256, 699, 986 |
| HapII | CCGG | 3 cut(s) | 908, 1140, 1545 |
| HhaI | GCGC | 1 cut(s) | 85 |
| Hin1II | CATG | 5 cut(s) | 264, 325, 371, 770, 1015 |
| Hin6I | GCGC | 1 cut(s) | 83 |
| HinP1I | GCGC | 1 cut(s) | 83 |
| HindIII | AAGCTT | 1 cut(s) | 1395 |
| HinfI | GANTC | 7 cut(s) | 4, 98, 445, 542, 947, 1452, 1472 |
| HpaII | CCGG | 3 cut(s) | 908, 1140, 1545 |
| HphI | GGTGA | 4 cut(s) | 296, 479, 529, 1168 |
| Hpy166II | GTNNAC | 3 cut(s) | 1057, 1446, 1550 |
| Hpy188I | TCNGA | 4 cut(s) | 34, 111, 441, 740 |
| Hpy188III | TCNNGA | 6 cut(s) | 178, 206, 951, 1018, 1316, 1476 |
| Hpy8I | GTNNAC | 3 cut(s) | 1057, 1446, 1550 |
| HpyAV | CCTTC | 4 cut(s) | 124, 260, 604, 1082 |
| HpyCH4III | ACNGT | 3 cut(s) | 21, 709, 926 |
| HpyCH4IV | ACGT | 1 cut(s) | 550 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 497, 524, 1076, 1172, 1181 |
| HpyF3I | CTNAG | 4 cut(s) | 11, 529, 632, 1440 |
| HpySE526I | ACGT | 1 cut(s) | 550 |
| Hsp92II | CATG | 5 cut(s) | 264, 325, 371, 770, 1015 |
| HspAI | GCGC | 1 cut(s) | 83 |
| Ksp22I | TGATCA | 4 cut(s) | 106, 1014, 1372, 1569 |
| LmnI | GCTCC | 9 cut(s) | 332, 497, 697, 998, 1067, 1163, 1211, 1478, 1512 |
| Lsp1109I | GCAGC | 2 cut(s) | 833, 1493 |
| LweI | GCATC | 4 cut(s) | 102, 295, 322, 1414 |
| MaeI | CTAG | 2 cut(s) | 317, 566 |
| MaeII | ACGT | 1 cut(s) | 550 |
| MaeIII | GTNAC | 1 cut(s) | 791 |
| MboII | GAAGA | 6 cut(s) | 29, 72, 193, 417, 454, 523 |
| MfeI | CAATTG | 2 cut(s) | 1071, 1080 |
| MflI | RGATCY | 3 cut(s) | 34, 202, 715 |
| MlsI | TGGCCA | 1 cut(s) | 699 |
| MluI | ACGCGT | 1 cut(s) | 625 |
| MluNI | TGGCCA | 1 cut(s) | 699 |
| MlyI | GAGTC | 5 cut(s) | 439, 536, 956, 1446, 1481 |
| MmeI | TCCRAC | 5 cut(s) | 150, 702, 898, 1252, 1333 |
| Mox20I | TGGCCA | 1 cut(s) | 699 |
| MroXI | GAANNNNTTC | 3 cut(s) | 64, 185, 1092 |
| MscI | TGGCCA | 1 cut(s) | 699 |
| MseI | TTAA | 6 cut(s) | 219, 837, 956, 1005, 1040, 1103 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1441 |
| Msp20I | TGGCCA | 1 cut(s) | 699 |
| MspA1I | CMGCKG | 1 cut(s) | 1484 |
| MspI | CCGG | 3 cut(s) | 908, 1140, 1545 |
| MspR9I | CCNGG | 2 cut(s) | 696, 908 |
| MunI | CAATTG | 2 cut(s) | 1071, 1080 |
| Mva1269I | GAATGC | 2 cut(s) | 571, 824 |
| MvaI | CCWGG | 1 cut(s) | 696 |
| MvnI | CGCG | 1 cut(s) | 627 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 497, 524, 1076, 1172, 1181 |
| NciI | CCSGG | 1 cut(s) | 908 |
| NcoI | CCATGG | 1 cut(s) | 321 |
| NdeI | CATATG | 2 cut(s) | 1192, 1240 |
| NlaIII | CATG | 5 cut(s) | 264, 325, 371, 770, 1015 |
| NlaIV | GGNNCC | 1 cut(s) | 1129 |
| NmuCI | GTSAC | 1 cut(s) | 791 |
| OliI | CACNNNNGTG | 1 cut(s) | 1441 |
| PctI | GAATGC | 2 cut(s) | 571, 824 |
| PdmI | GAANNNNTTC | 3 cut(s) | 64, 185, 1092 |
| PfeI | GAWTC | 1 cut(s) | 98 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1031, 1322 |
| PkrI | GCNGC | 3 cut(s) | 823, 1078, 1483 |
| PleI | GAGTC | 5 cut(s) | 439, 536, 955, 1446, 1480 |
| PmaCI | CACGTG | 1 cut(s) | 551 |
| PmlI | CACGTG | 1 cut(s) | 551 |
| PpsI | GAGTC | 5 cut(s) | 439, 536, 955, 1446, 1480 |
| Ppu21I | YACGTR | 1 cut(s) | 551 |
| PshBI | ATTAAT | 2 cut(s) | 837, 1040 |
| Psp6I | CCWGG | 1 cut(s) | 694 |
| PspCI | CACGTG | 1 cut(s) | 551 |
| PspGI | CCWGG | 1 cut(s) | 694 |
| PspN4I | GGNNCC | 1 cut(s) | 1129 |
| PspPI | GGNCC | 2 cut(s) | 17, 118 |
| PstI | CTGCAG | 1 cut(s) | 360 |
| PstNI | CAGNNNCTG | 2 cut(s) | 115, 695 |
| PsuI | RGATCY | 3 cut(s) | 34, 202, 715 |
| PvuII | CAGCTG | 1 cut(s) | 1484 |
| RsaI | GTAC | 7 cut(s) | 564, 630, 667, 731, 765, 1527, 1551 |
| RsaNI | GTAC | 7 cut(s) | 563, 629, 666, 730, 764, 1526, 1550 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1441 |
| Rsr2I | CGGWCCG | 1 cut(s) | 17 |
| RsrII | CGGWCCG | 1 cut(s) | 17 |
| SaqAI | TTAA | 6 cut(s) | 219, 837, 956, 1005, 1040, 1103 |
| SatI | GCNGC | 3 cut(s) | 822, 1077, 1482 |
| Sau96I | GGNCC | 2 cut(s) | 17, 118 |
| ScaI | AGTACT | 1 cut(s) | 564 |
| SchI | GAGTC | 5 cut(s) | 439, 536, 956, 1446, 1481 |
| ScrFI | CCNGG | 2 cut(s) | 696, 908 |
| SfaNI | GCATC | 4 cut(s) | 102, 295, 322, 1414 |
| SfcI | CTRYAG | 1 cut(s) | 356 |
| SinI | GGWCC | 2 cut(s) | 17, 118 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1441 |
| SmlI | CTYRAG | 1 cut(s) | 576 |
| SmoI | CTYRAG | 1 cut(s) | 576 |
| SpeI | ACTAGT | 1 cut(s) | 565 |
| SsiI | CCGC | 3 cut(s) | 15, 95, 1077 |
| SspI | AATATT | 1 cut(s) | 213 |
| SspMI | CTAG | 2 cut(s) | 317, 566 |
| StyD4I | CCNGG | 2 cut(s) | 694, 906 |
| StyI | CCWWGG | 3 cut(s) | 321, 987, 1251 |
| TaaI | ACNGT | 3 cut(s) | 21, 709, 926 |
| TaiI | ACGT | 1 cut(s) | 553 |
| TaqI | TCGA | 3 cut(s) | 58, 891, 975 |
| TatI | WGTACW | 4 cut(s) | 562, 729, 763, 1525 |
| TauI | GCSGC | 1 cut(s) | 1079 |
| TfiI | GAWTC | 1 cut(s) | 98 |
| Tru1I | TTAA | 6 cut(s) | 219, 837, 956, 1005, 1040, 1103 |
| Tru9I | TTAA | 6 cut(s) | 219, 837, 956, 1005, 1040, 1103 |
| TscAI | CASTG | 1 cut(s) | 315 |
| TseFI | GTSAC | 1 cut(s) | 791 |
| TseI | GCWGC | 2 cut(s) | 821, 1481 |
| Tsp45I | GTSAC | 1 cut(s) | 791 |
| TspDTI | ATGAA | 4 cut(s) | 29, 384, 984, 1373 |
| TspRI | CASTG | 1 cut(s) | 315 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1031, 1322 |
| VpaK11BI | GGWCC | 2 cut(s) | 17, 118 |
| VspI | ATTAAT | 2 cut(s) | 837, 1040 |
| XapI | RAATTY | 5 cut(s) | 64, 162, 371, 849, 1306 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1319 |
| XmnI | GAANNNNTTC | 3 cut(s) | 64, 185, 1092 |
| XspI | CTAG | 2 cut(s) | 317, 566 |
| ZrmI | AGTACT | 1 cut(s) | 564 |