Prupe.6G334000_v2.0.a1

Bifunctional 3-dehydroquinate dehydratase shikimate dehydrogenase, chloroplastic-like

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Reverse (-)
29017583 .. 29022883
5301 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G334000.2

Sequence Viewer

Length: 1599 bp
ATGACTCTCCTTAGCGGACCGTTGGCTGTTTCGGATCTTCATACTACGAATGGAACTCGAAGAAATTCAACACTCATCTGTGCGCCAGTAATGGCGGAATCAGTTGATCAGATGCTGGTCCAAATGGGGAAGGCAAGGGAAGTTGGTGCTGACCTCGTTGAAATTCGGTTGGACTTCTTGAAGAACTTCAGTCCAAGACAAGATCTTGAAATATTGATTAAACATTCTCCTTTGCCAACTCTTTTCACTTACAGGCCAGCATGGGAAGGTGGTCAATATAAAGGTGATGACAACAAGCGACAAGATGCACTGCATCTAGCCATGGAATTGGGAGCAGATTATATTGATGTTGAACTGCAGGTAGCCCATGAATTCTACAATTCCATTCAAGGGGAGAAGCCAGAAAAGGTCAAAATCATTGTTTCTTCACACAACTATCAGAAGACTCCATCCACCGAGGAAATTGGTGATCTTGTTGCAAGGATACAAGCTACTGGAGCTGACATAGTGAAGATTGCAACAACTGCCTTAGACATCACCGACTCTGCACGTGTATTTCAAGTACTAGTGCATTCTCAAGTCCCAATGATAGGGCTTGTTATGGGCGAGAAGGGTTTGATCTCACGCGTACTTAGTGCAAAATATGGTGCATTTCTCACATTTGGTACAATAGAGGCTGGAGTAGTATCAGCTCCTGGCCAGCCTACTGTAAAAGATCTGTTGGACTTGTACAATTTCAGACTTATAGGGCTGGATACCAAAGTACATGGTGTGATAGGAAATCCTATTGGTCACAGCAAAAGCCCTCATCTTTACAATGCAGCATTCAAATCTATTAATTTCAATGGAATTTATTTGCCTCTGTTGGTTGATAGCGTTGCAAACTTTATCGACACCTATAACTCCCCGGATTTTGTTGGATACAGTTTCACAATTCCTCACAAGGAGTCTGGATTAAAATGCTGTGATGAAATCGATCCAAAGGCCAAGGAAATAGGAGCAGTTAATTGCATGATCAGGAGACCAACCGATGGAAAATTAATAGGCTATAATGTGGACTATCTTGGAGCAATTGCCGCAATTGAGGAAGGACTTCAAGCATTAAATGGTTCAAGTAATACATCTGGTTCCCTGTTAGCCGGTAAGTTATTCGTGGTGATGGGAGCTGGTGGTGCTGGAAAAGCACTTGCATATGGTGGAAAAGAAAAGGGAGCAAGAGTTGTAGTTGCCAATCGCACATATGACAAAGCCAAGGCACTTGCAAATAAAGTTGGAGGAGAAGCTATTACCCTTGCTGAATTGGAAAATTTCCATCCAGAGGATGGGATGGTTCTTGCAAATACCACATCTGTTGGAATGAAACCAAGAACTGATCAAACACCCATATCCAAGAAAGCTTTGAAGCACTACTCTTTGGTGTTTGATGCCATTTATACACCTAAGTGGACAAGACTCTTGCAAGAAGCACAAGAGTCTGGAGCAGCTGTGGTCTCTGGGACAGAAATGCTCCTCAATCAAGCATTTGTACAGATTGAAAGTTTTTCCGGTGTACCTGCACCAAAGCAACTGATCAGGGATGTGTTGGCAAGAAATACATAA

Protein Analysis

533

Amino Acids

57.48

Weight (kDa)

6.33

Isoelectric Point (pI)

27.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 349, 1561
AccB7I CCANNNNNTGG 2 cut(s) 1031, 1322
AccII CGCG 1 cut(s) 627
AciI CCGC 3 cut(s) 15, 95, 1077
AclWI GGATC 2 cut(s) 42, 971
AcoI YGGCCR 1 cut(s) 697
AcsI RAATTY 5 cut(s) 64, 162, 371, 849, 1306
AcuI CTGAAG 1 cut(s) 172
AcvI CACGTG 1 cut(s) 551
AfaI GTAC 7 cut(s) 564, 630, 667, 731, 765, 1527, 1551
AfiI CCNNNNNNNGG 5 cut(s) 390, 590, 1031, 1318, 1322
AflIII ACRYGT 2 cut(s) 550, 625
AhlI ACTAGT 1 cut(s) 565
AjnI CCWGG 1 cut(s) 694
AleI CACNNNNGTG 1 cut(s) 1441
AluBI AGCT 7 cut(s) 491, 500, 692, 1166, 1283, 1397, 1484
AluI AGCT 7 cut(s) 491, 500, 692, 1166, 1283, 1397, 1484
Alw26I GTCTC 2 cut(s) 1015, 1495
AlwI GGATC 2 cut(s) 42, 971
AlwNI CAGNNNCTG 2 cut(s) 115, 695
AoxI GGCC 3 cut(s) 254, 697, 984
ApeKI GCWGC 2 cut(s) 821, 1481
ApoI RAATTY 5 cut(s) 64, 162, 371, 849, 1306
AseI ATTAAT 2 cut(s) 837, 1040
Asp700I GAANNNNTTC 3 cut(s) 64, 185, 1092
AspLEI GCGC 1 cut(s) 85
AspS9I GGNCC 2 cut(s) 17, 118
AsuC2I CCSGG 1 cut(s) 908
AsuHPI GGTGA 4 cut(s) 296, 479, 529, 1168
AvaII GGWCC 2 cut(s) 17, 118
BaeI ACNNNNGTAYC 2 cut(s) 747, 780
BalI TGGCCA 1 cut(s) 699
BbrPI CACGTG 1 cut(s) 551
BbsI GAAGAC 1 cut(s) 449
BbvI GCAGC 2 cut(s) 833, 1493
BccI CCATC 6 cut(s) 457, 1025, 1153, 1316, 1320, 1321
BciT130I CCWGG 1 cut(s) 696
BciVI GTATCC 3 cut(s) 477, 748, 914
BclI TGATCA 4 cut(s) 106, 1014, 1372, 1569
BcnI CCSGG 1 cut(s) 908
BcoDI GTCTC 2 cut(s) 1015, 1495
BcuI ACTAGT 1 cut(s) 565
BfaI CTAG 2 cut(s) 317, 566
BfmI CTRYAG 1 cut(s) 356
BfuAI ACCTGC 2 cut(s) 349, 1561
BfuI GTATCC 3 cut(s) 477, 748, 914
BglII AGATCT 2 cut(s) 202, 715
BisI GCNGC 3 cut(s) 822, 1077, 1482
BlsI GCNGC 3 cut(s) 823, 1078, 1483
BmcAI AGTACT 1 cut(s) 564
Bme1390I CCNGG 2 cut(s) 696, 908
Bme18I GGWCC 2 cut(s) 17, 118
BmgT120I GGNCC 2 cut(s) 17, 118
BmiI GGNNCC 1 cut(s) 1129
BmrFI CCNGG 2 cut(s) 696, 908
BmsI GCATC 4 cut(s) 102, 295, 322, 1414
BpiI GAAGAC 1 cut(s) 449
BpmI CTGGAG 3 cut(s) 516, 699, 1497
Bpu10I CCTNAGC 1 cut(s) 11
BpuEI CTTGAG 1 cut(s) 561
BpuMI CCSGG 1 cut(s) 908
Bsa29I ATCGAT 1 cut(s) 975
BsaAI YACGTR 1 cut(s) 551
BsaI GGTCTC 2 cut(s) 1015, 1495
BsaJI CCNNGG 5 cut(s) 321, 456, 906, 987, 1251
BsaWI WCCGGW 1 cut(s) 1544
BsaXI ACNNNNNCTCC 4 cut(s) 1203, 1233, 1470, 1500
Bsc4I CCNNNNNNNGG 5 cut(s) 390, 590, 1031, 1318, 1322
Bse118I RCCGGY 1 cut(s) 1139
Bse1I ACTGG 2 cut(s) 86, 499
BseBI CCWGG 1 cut(s) 696
BseCI ATCGAT 1 cut(s) 975
BseDI CCNNGG 5 cut(s) 321, 456, 906, 987, 1251
BseGI GGATG 5 cut(s) 449, 1312, 1327, 1332, 1582
BseLI CCNNNNNNNGG 5 cut(s) 390, 590, 1031, 1318, 1322
BseNI ACTGG 2 cut(s) 86, 499
BseRI GAGGAG 2 cut(s) 1290, 1499
BseXI GCAGC 2 cut(s) 833, 1493
BsgI GTGCAG 2 cut(s) 531, 1539
Bsh1236I CGCG 1 cut(s) 627
BshFI GGCC 3 cut(s) 256, 699, 986
BshVI ATCGAT 1 cut(s) 975
BsiSI CCGG 3 cut(s) 908, 1140, 1545
BslFI GGGAC 2 cut(s) 566, 1510
BslI CCNNNNNNNGG 5 cut(s) 390, 590, 1031, 1318, 1322
BsmAI GTCTC 2 cut(s) 1015, 1495
BsmFI GGGAC 2 cut(s) 566, 1510
BsmI GAATGC 2 cut(s) 571, 824
BsnI GGCC 3 cut(s) 256, 699, 986
Bso31I GGTCTC 2 cut(s) 1015, 1495
Bsp1407I TGTACA 2 cut(s) 729, 1525
Bsp19I CCATGG 1 cut(s) 321
BspACI CCGC 3 cut(s) 15, 95, 1077
BspANI GGCC 3 cut(s) 256, 699, 986
BspDI ATCGAT 1 cut(s) 975
BspFNI CGCG 1 cut(s) 627
BspLI GGNNCC 1 cut(s) 1129
BspMAI CTGCAG 1 cut(s) 360
BspMI ACCTGC 2 cut(s) 349, 1561
BspPI GGATC 2 cut(s) 42, 971
BspTNI GGTCTC 2 cut(s) 1015, 1495
BsrFI RCCGGY 1 cut(s) 1139
BsrGI TGTACA 2 cut(s) 729, 1525
BsrI ACTGG 2 cut(s) 86, 499
BssAI RCCGGY 1 cut(s) 1139
BssECI CCNNGG 5 cut(s) 321, 456, 906, 987, 1251
BssT1I CCWWGG 3 cut(s) 321, 987, 1251
Bst2UI CCWGG 1 cut(s) 696
Bst4CI ACNGT 3 cut(s) 21, 709, 926
BstAPI GCANNNNNTGC 1 cut(s) 524
BstAUI TGTACA 2 cut(s) 729, 1525
BstBAI YACGTR 1 cut(s) 551
BstC8I GCNNGC 2 cut(s) 258, 701
BstDEI CTNAG 4 cut(s) 11, 529, 632, 1440
BstDSI CCRYGG 1 cut(s) 321
BstF5I GGATG 5 cut(s) 449, 1312, 1327, 1332, 1582
BstFNI CGCG 1 cut(s) 627
BstHHI GCGC 1 cut(s) 85
BstMAI GTCTC 2 cut(s) 1015, 1495
BstMWI GCNNNNNNNGC 5 cut(s) 497, 524, 1076, 1172, 1181
BstNI CCWGG 1 cut(s) 696
BstSCI CCNGG 2 cut(s) 694, 906
BstSFI CTRYAG 1 cut(s) 356
BstUI CGCG 1 cut(s) 627
BstV1I GCAGC 2 cut(s) 833, 1493
BstV2I GAAGAC 1 cut(s) 449
BstX2I RGATCY 3 cut(s) 34, 202, 715
BstXI CCANNNNNNTGG 1 cut(s) 328
BstYI RGATCY 3 cut(s) 34, 202, 715
Bsu15I ATCGAT 1 cut(s) 975
BsuI GTATCC 3 cut(s) 477, 748, 914
BsuRI GGCC 3 cut(s) 256, 699, 986
BsuTUI ATCGAT 1 cut(s) 975
BtgI CCRYGG 1 cut(s) 321
BtsCI GGATG 5 cut(s) 449, 1312, 1327, 1332, 1582
BtsI GCAGTG 1 cut(s) 308
BtsIMutI CAGTG 1 cut(s) 308
BveI ACCTGC 2 cut(s) 349, 1561
Cac8I GCNNGC 2 cut(s) 258, 701
CaiI CAGNNNCTG 2 cut(s) 115, 695
CfoI GCGC 1 cut(s) 85
Cfr10I RCCGGY 1 cut(s) 1139
Cfr13I GGNCC 2 cut(s) 17, 118
ClaI ATCGAT 1 cut(s) 975
CpoI CGGWCCG 1 cut(s) 17
Csp6I GTAC 7 cut(s) 563, 629, 666, 730, 764, 1526, 1550
CspCI CAANNNNNGTGG 2 cut(s) 1333, 1368
CspI CGGWCCG 1 cut(s) 17
CviAII CATG 5 cut(s) 261, 322, 368, 767, 1012
CviQI GTAC 7 cut(s) 563, 629, 666, 730, 764, 1526, 1550
DdeI CTNAG 4 cut(s) 11, 529, 632, 1440
EaeI YGGCCR 1 cut(s) 697
EciI GGCGGA 1 cut(s) 110
Eco130I CCWWGG 3 cut(s) 321, 987, 1251
Eco31I GGTCTC 2 cut(s) 1015, 1495
Eco47I GGWCC 2 cut(s) 17, 118
Eco57I CTGAAG 1 cut(s) 172
Eco72I CACGTG 1 cut(s) 551
EcoRI GAATTC 1 cut(s) 371
EcoRII CCWGG 1 cut(s) 694
EcoT14I CCWWGG 3 cut(s) 321, 987, 1251
ErhI CCWWGG 3 cut(s) 321, 987, 1251
FaeI CATG 5 cut(s) 264, 325, 371, 770, 1015
FaqI GGGAC 2 cut(s) 566, 1510
FatI CATG 5 cut(s) 260, 321, 367, 766, 1011
FauNDI CATATG 2 cut(s) 1192, 1240
FbaI TGATCA 4 cut(s) 106, 1014, 1372, 1569
Fnu4HI GCNGC 3 cut(s) 822, 1077, 1482
FokI GGATG 5 cut(s) 436, 1299, 1334, 1339, 1589
Fsp4HI GCNGC 3 cut(s) 822, 1077, 1482
FspBI CTAG 2 cut(s) 317, 566
GlaI GCGC 1 cut(s) 84
GluI GCNGC 3 cut(s) 822, 1077, 1482
GsuI CTGGAG 3 cut(s) 516, 699, 1497
HaeIII GGCC 3 cut(s) 256, 699, 986
HapII CCGG 3 cut(s) 908, 1140, 1545
HhaI GCGC 1 cut(s) 85
Hin1II CATG 5 cut(s) 264, 325, 371, 770, 1015
Hin6I GCGC 1 cut(s) 83
HinP1I GCGC 1 cut(s) 83
HindIII AAGCTT 1 cut(s) 1395
HinfI GANTC 7 cut(s) 4, 98, 445, 542, 947, 1452, 1472
HpaII CCGG 3 cut(s) 908, 1140, 1545
HphI GGTGA 4 cut(s) 296, 479, 529, 1168
Hpy166II GTNNAC 3 cut(s) 1057, 1446, 1550
Hpy188I TCNGA 4 cut(s) 34, 111, 441, 740
Hpy188III TCNNGA 6 cut(s) 178, 206, 951, 1018, 1316, 1476
Hpy8I GTNNAC 3 cut(s) 1057, 1446, 1550
HpyAV CCTTC 4 cut(s) 124, 260, 604, 1082
HpyCH4III ACNGT 3 cut(s) 21, 709, 926
HpyCH4IV ACGT 1 cut(s) 550
HpyF10VI GCNNNNNNNGC 5 cut(s) 497, 524, 1076, 1172, 1181
HpyF3I CTNAG 4 cut(s) 11, 529, 632, 1440
HpySE526I ACGT 1 cut(s) 550
Hsp92II CATG 5 cut(s) 264, 325, 371, 770, 1015
HspAI GCGC 1 cut(s) 83
Ksp22I TGATCA 4 cut(s) 106, 1014, 1372, 1569
LmnI GCTCC 9 cut(s) 332, 497, 697, 998, 1067, 1163, 1211, 1478, 1512
Lsp1109I GCAGC 2 cut(s) 833, 1493
LweI GCATC 4 cut(s) 102, 295, 322, 1414
MaeI CTAG 2 cut(s) 317, 566
MaeII ACGT 1 cut(s) 550
MaeIII GTNAC 1 cut(s) 791
MboII GAAGA 6 cut(s) 29, 72, 193, 417, 454, 523
MfeI CAATTG 2 cut(s) 1071, 1080
MflI RGATCY 3 cut(s) 34, 202, 715
MlsI TGGCCA 1 cut(s) 699
MluI ACGCGT 1 cut(s) 625
MluNI TGGCCA 1 cut(s) 699
MlyI GAGTC 5 cut(s) 439, 536, 956, 1446, 1481
MmeI TCCRAC 5 cut(s) 150, 702, 898, 1252, 1333
Mox20I TGGCCA 1 cut(s) 699
MroXI GAANNNNTTC 3 cut(s) 64, 185, 1092
MscI TGGCCA 1 cut(s) 699
MseI TTAA 6 cut(s) 219, 837, 956, 1005, 1040, 1103
MslI CAYNNNNRTG 1 cut(s) 1441
Msp20I TGGCCA 1 cut(s) 699
MspA1I CMGCKG 1 cut(s) 1484
MspI CCGG 3 cut(s) 908, 1140, 1545
MspR9I CCNGG 2 cut(s) 696, 908
MunI CAATTG 2 cut(s) 1071, 1080
Mva1269I GAATGC 2 cut(s) 571, 824
MvaI CCWGG 1 cut(s) 696
MvnI CGCG 1 cut(s) 627
MwoI GCNNNNNNNGC 5 cut(s) 497, 524, 1076, 1172, 1181
NciI CCSGG 1 cut(s) 908
NcoI CCATGG 1 cut(s) 321
NdeI CATATG 2 cut(s) 1192, 1240
NlaIII CATG 5 cut(s) 264, 325, 371, 770, 1015
NlaIV GGNNCC 1 cut(s) 1129
NmuCI GTSAC 1 cut(s) 791
OliI CACNNNNGTG 1 cut(s) 1441
PctI GAATGC 2 cut(s) 571, 824
PdmI GAANNNNTTC 3 cut(s) 64, 185, 1092
PfeI GAWTC 1 cut(s) 98
PflMI CCANNNNNTGG 2 cut(s) 1031, 1322
PkrI GCNGC 3 cut(s) 823, 1078, 1483
PleI GAGTC 5 cut(s) 439, 536, 955, 1446, 1480
PmaCI CACGTG 1 cut(s) 551
PmlI CACGTG 1 cut(s) 551
PpsI GAGTC 5 cut(s) 439, 536, 955, 1446, 1480
Ppu21I YACGTR 1 cut(s) 551
PshBI ATTAAT 2 cut(s) 837, 1040
Psp6I CCWGG 1 cut(s) 694
PspCI CACGTG 1 cut(s) 551
PspGI CCWGG 1 cut(s) 694
PspN4I GGNNCC 1 cut(s) 1129
PspPI GGNCC 2 cut(s) 17, 118
PstI CTGCAG 1 cut(s) 360
PstNI CAGNNNCTG 2 cut(s) 115, 695
PsuI RGATCY 3 cut(s) 34, 202, 715
PvuII CAGCTG 1 cut(s) 1484
RsaI GTAC 7 cut(s) 564, 630, 667, 731, 765, 1527, 1551
RsaNI GTAC 7 cut(s) 563, 629, 666, 730, 764, 1526, 1550
RseI CAYNNNNRTG 1 cut(s) 1441
Rsr2I CGGWCCG 1 cut(s) 17
RsrII CGGWCCG 1 cut(s) 17
SaqAI TTAA 6 cut(s) 219, 837, 956, 1005, 1040, 1103
SatI GCNGC 3 cut(s) 822, 1077, 1482
Sau96I GGNCC 2 cut(s) 17, 118
ScaI AGTACT 1 cut(s) 564
SchI GAGTC 5 cut(s) 439, 536, 956, 1446, 1481
ScrFI CCNGG 2 cut(s) 696, 908
SfaNI GCATC 4 cut(s) 102, 295, 322, 1414
SfcI CTRYAG 1 cut(s) 356
SinI GGWCC 2 cut(s) 17, 118
SmiMI CAYNNNNRTG 1 cut(s) 1441
SmlI CTYRAG 1 cut(s) 576
SmoI CTYRAG 1 cut(s) 576
SpeI ACTAGT 1 cut(s) 565
SsiI CCGC 3 cut(s) 15, 95, 1077
SspI AATATT 1 cut(s) 213
SspMI CTAG 2 cut(s) 317, 566
StyD4I CCNGG 2 cut(s) 694, 906
StyI CCWWGG 3 cut(s) 321, 987, 1251
TaaI ACNGT 3 cut(s) 21, 709, 926
TaiI ACGT 1 cut(s) 553
TaqI TCGA 3 cut(s) 58, 891, 975
TatI WGTACW 4 cut(s) 562, 729, 763, 1525
TauI GCSGC 1 cut(s) 1079
TfiI GAWTC 1 cut(s) 98
Tru1I TTAA 6 cut(s) 219, 837, 956, 1005, 1040, 1103
Tru9I TTAA 6 cut(s) 219, 837, 956, 1005, 1040, 1103
TscAI CASTG 1 cut(s) 315
TseFI GTSAC 1 cut(s) 791
TseI GCWGC 2 cut(s) 821, 1481
Tsp45I GTSAC 1 cut(s) 791
TspDTI ATGAA 4 cut(s) 29, 384, 984, 1373
TspRI CASTG 1 cut(s) 315
Van91I CCANNNNNTGG 2 cut(s) 1031, 1322
VpaK11BI GGWCC 2 cut(s) 17, 118
VspI ATTAAT 2 cut(s) 837, 1040
XapI RAATTY 5 cut(s) 64, 162, 371, 849, 1306
XcmI CCANNNNNNNNNTGG 1 cut(s) 1319
XmnI GAANNNNTTC 3 cut(s) 64, 185, 1092
XspI CTAG 2 cut(s) 317, 566
ZrmI AGTACT 1 cut(s) 564
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.