Rh3BG050600

Bifunctional 3-dehydroquinate dehydratase shikimate dehydrogenase, chloroplastic-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
Physical Location & Seq
Forward (+)
3446013 .. 3452079
6067 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG050600.1

Sequence Viewer

Length: 1272 bp
ATGACTCTCAGCAGTATTCCGTTGGCTACGTCGGATCTTCAAATCGGTCATGGAGCTCGAAGAAATTCGACACTAATCTGTGCGCCGGTAATGGGGGAATCAGTTGATCAGATGCTGCGTCAAGTGCGACAGGCAAAGGAACTTGGTGCTGACCTTGTTGAGATTCGGTTGGACTACATTAAGAACTTCAGTCCAAGACAAGATCTCGAAACTTTGATTAAGCGCAGCCCTTTGCCAACACTCGTCACTTACAGGCCAAAATGGGAAGGTGGTGAGTATGAAGGAGATGAAAATAAGCGACAAGAGGCACTCATTTTAGCCATGGAATTGGGAGCGGATTATATTGATGTTGAACTAAAGGTAGCAAATGACTTCTACAGTTCTATTCAAGGGAAGAAGCCAGAAAAGGTCAAAATCATAGTTTCTTCCCACAACTATGAGAATACTCCATCTGCTGAGGAAATTGGCAATCTTGTTGCAACGATACAAGCCATTGGAGCTGACATAGTCAAGGTCGCAACAACTGCCTTGGACATAACAGACAATGCAAGAATATTTCAAGTGCTAGCGCGTTCTCAAGTCCCAATGATAGGACTTTTGATGGGTGAGAAGGGTTTGATCTCTCGTGTACTTAGTGCAAAATATGGGTCATATGTCACATTTGGTACACTAGAGGCAGGTGAGGTATCAGCTCCTGGCCAGCCAACTGTAACGGATCTGTTGGAGTTATACAATTTTAGGCAGATTGGAGCCGATACCAAAGTACATGGTGTGATAGGAAATCCTATTGGTCACAGCAAAAGTCCTCATCTTTACAATGCAGCATTTAAAGCCAATAACTTCAATGGAATTTATCTGCCATTGCTGGTTGATAGCGTTGCAAACTTTATCAACACCTATAACTCCCCTGATTGGGTTGGATACAGTTACACAATTCCTCACAAAGAAGCTGGATTCAAATGTTGTGATGAGATCGATCCTAATGCCCTGGCAATAGGAGCTATTAGTTGCATGATCAGGAACCCAACTGATGGGAAGTTAAAGGGCTATAATGTTGACTATCTTGGAGCAATTGCAGCTATTGAGGAAGGACTTCGAGGATTAGGATTGAACGGTTCAAGTAATGGATCTGGTTCCCCATTAGCTGGTAGGTTATTTGTGGTCATGGGAGCTGGTGGTGCTGGAAAGGCACTTGCATATGGTGGAAAACAAAAGGGAGCAAGAGTTGTCGTTGCCAATCGCTCATTTGGTGAGTCTTCAATCTTGCACTAA

Protein Analysis

423

Amino Acids

45.45

Weight (kDa)

6.21

Isoelectric Point (pI)

28.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DHquinase_I PF01487 27 - 244 3.6e-70 Type I 3-dehydroquinase
Shikimate_dh_N PF08501 258 - 336 7.4e-21 Shikimate dehydrogenase substrate binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 668
Acc36I ACCTGC 1 cut(s) 668
AccB7I CCANNNNNTGG 2 cut(s) 1031, 1145
AccBSI CCGCTC 1 cut(s) 335
AccII CGCG 1 cut(s) 571
AciI CCGC 1 cut(s) 335
AclWI GGATC 4 cut(s) 42, 723, 971, 1135
AcoI YGGCCR 1 cut(s) 697
AcsI RAATTY 2 cut(s) 64, 849
AcuI CTGAAG 1 cut(s) 172
AfaI GTAC 3 cut(s) 630, 667, 765
AfiI CCNNNNNNNGG 6 cut(s) 92, 590, 912, 913, 1031, 1145
AgsI TTSAA 9 cut(s) 41, 353, 389, 560, 844, 958, 1111, 1119, 1260
AjnI CCWGG 2 cut(s) 694, 987
AluBI AGCT 8 cut(s) 56, 500, 692, 950, 1001, 1079, 1145, 1172
AluI AGCT 8 cut(s) 56, 500, 692, 950, 1001, 1079, 1145, 1172
Alw21I GWGCWC 1 cut(s) 58
AlwI GGATC 4 cut(s) 42, 723, 971, 1135
AlwNI CAGNNNCTG 2 cut(s) 115, 695
AoxI GGCC 2 cut(s) 254, 697
ApeKI GCWGC 4 cut(s) 115, 225, 821, 1076
ApoI RAATTY 2 cut(s) 64, 849
ArsI GACNNNNNNTTYG 2 cut(s) 632, 664
Asp700I GAANNNNTTC 2 cut(s) 64, 1092
AspLEI GCGC 3 cut(s) 85, 225, 571
AsuHPI GGTGA 4 cut(s) 284, 617, 692, 1262
AsuNHI GCTAGC 1 cut(s) 565
BaeI ACNNNNGTAYC 2 cut(s) 747, 780
BalI TGGCCA 1 cut(s) 699
BanII GRGCYC 1 cut(s) 58
BauI CACGAG 1 cut(s) 624
BbsI GAAGAC 1 cut(s) 1248
Bbv12I GWGCWC 1 cut(s) 58
BbvCI CCTCAGC 1 cut(s) 456
BbvI GCAGC 4 cut(s) 102, 237, 833, 1088
BccI CCATC 3 cut(s) 457, 595, 1025
BcgI CGANNNNNNTGC 2 cut(s) 965, 999
BciT130I CCWGG 2 cut(s) 696, 989
BciVI GTATCC 1 cut(s) 914
BclI TGATCA 2 cut(s) 106, 1014
BfaI CTAG 2 cut(s) 566, 671
BfmI CTRYAG 1 cut(s) 376
BfuAI ACCTGC 1 cut(s) 668
BfuI GTATCC 1 cut(s) 914
BglII AGATCT 1 cut(s) 202
BisI GCNGC 4 cut(s) 116, 226, 822, 1077
BlsI GCNGC 4 cut(s) 117, 227, 823, 1078
Bme1390I CCNGG 2 cut(s) 696, 989
BmiI GGNNCC 3 cut(s) 751, 1022, 1135
BmrFI CCNGG 2 cut(s) 696, 989
BmsI GCATC 1 cut(s) 102
BmtI GCTAGC 1 cut(s) 569
BpiI GAAGAC 1 cut(s) 1248
Bpu10I CCTNAGC 1 cut(s) 456
BpuEI CTTGAG 1 cut(s) 561
Bsa29I ATCGAT 1 cut(s) 975
BsaJI CCNNGG 3 cut(s) 321, 528, 987
BsaXI ACNNNNNCTCC 2 cut(s) 1209, 1239
Bsc4I CCNNNNNNNGG 6 cut(s) 92, 590, 912, 913, 1031, 1145
Bse118I RCCGGY 1 cut(s) 85
Bse3DI GCAATG 1 cut(s) 860
BseBI CCWGG 2 cut(s) 696, 989
BseCI ATCGAT 1 cut(s) 975
BseDI CCNNGG 3 cut(s) 321, 528, 987
BseLI CCNNNNNNNGG 6 cut(s) 92, 590, 912, 913, 1031, 1145
BseMI GCAATG 1 cut(s) 860
BseMII CTCAG 2 cut(s) 22, 447
BseXI GCAGC 4 cut(s) 102, 237, 833, 1088
Bsh1236I CGCG 1 cut(s) 571
BshFI GGCC 2 cut(s) 256, 699
BshVI ATCGAT 1 cut(s) 975
BsiHKAI GWGCWC 1 cut(s) 58
BsiSI CCGG 1 cut(s) 86
BslFI GGGAC 1 cut(s) 566
BslI CCNNNNNNNGG 6 cut(s) 92, 590, 912, 913, 1031, 1145
BsmFI GGGAC 1 cut(s) 566
BsnI GGCC 2 cut(s) 256, 699
Bsp1286I GDGCHC 1 cut(s) 58
Bsp143I GATC 9 cut(s) 34, 106, 202, 618, 715, 972, 976, 1014, 1127
Bsp19I CCATGG 1 cut(s) 321
BspACI CCGC 1 cut(s) 335
BspANI GGCC 2 cut(s) 256, 699
BspCNI CTCAG 2 cut(s) 21, 448
BspDI ATCGAT 1 cut(s) 975
BspFNI CGCG 1 cut(s) 571
BspLI GGNNCC 3 cut(s) 751, 1022, 1135
BspMI ACCTGC 1 cut(s) 668
BspOI GCTAGC 1 cut(s) 569
BspPI GGATC 4 cut(s) 42, 723, 971, 1135
BsrBI CCGCTC 1 cut(s) 335
BsrDI GCAATG 1 cut(s) 860
BsrFI RCCGGY 1 cut(s) 85
BssAI RCCGGY 1 cut(s) 85
BssECI CCNNGG 3 cut(s) 321, 528, 987
BssMI GATC 9 cut(s) 34, 106, 202, 618, 715, 972, 976, 1014, 1127
BssSI CACGAG 1 cut(s) 624
BssT1I CCWWGG 2 cut(s) 321, 528
Bst2BI CACGAG 1 cut(s) 624
Bst2UI CCWGG 2 cut(s) 696, 989
Bst4CI ACNGT 4 cut(s) 380, 709, 926, 1115
BstAPI GCANNNNNTGC 1 cut(s) 524
BstC8I GCNNGC 2 cut(s) 567, 701
BstDEI CTNAG 3 cut(s) 8, 456, 632
BstDSI CCRYGG 1 cut(s) 321
BstFNI CGCG 1 cut(s) 571
BstHHI GCGC 3 cut(s) 85, 225, 571
BstKTI GATC 9 cut(s) 37, 109, 205, 621, 718, 975, 979, 1017, 1130
BstMBI GATC 9 cut(s) 34, 106, 202, 618, 715, 972, 976, 1014, 1127
BstMWI GCNNNNNNNGC 8 cut(s) 124, 497, 524, 830, 998, 1076, 1178, 1187
BstNI CCWGG 2 cut(s) 696, 989
BstSCI CCNGG 2 cut(s) 694, 987
BstSFI CTRYAG 1 cut(s) 376
BstUI CGCG 1 cut(s) 571
BstV1I GCAGC 4 cut(s) 102, 237, 833, 1088
BstV2I GAAGAC 1 cut(s) 1248
BstX2I RGATCY 4 cut(s) 34, 202, 715, 1127
BstXI CCANNNNNNTGG 1 cut(s) 328
BstYI RGATCY 4 cut(s) 34, 202, 715, 1127
Bsu15I ATCGAT 1 cut(s) 975
BsuI GTATCC 1 cut(s) 914
BsuRI GGCC 2 cut(s) 256, 699
BsuTUI ATCGAT 1 cut(s) 975
BtgI CCRYGG 1 cut(s) 321
BveI ACCTGC 1 cut(s) 668
Cac8I GCNNGC 2 cut(s) 567, 701
CaiI CAGNNNCTG 2 cut(s) 115, 695
CfoI GCGC 3 cut(s) 85, 225, 571
Cfr10I RCCGGY 1 cut(s) 85
ClaI ATCGAT 1 cut(s) 975
CseI GACGC 1 cut(s) 107
Csp6I GTAC 3 cut(s) 629, 666, 764
CviAII CATG 5 cut(s) 50, 322, 767, 1012, 1165
CviQI GTAC 3 cut(s) 629, 666, 764
DdeI CTNAG 3 cut(s) 8, 456, 632
DpnI GATC 9 cut(s) 36, 108, 204, 620, 717, 974, 978, 1016, 1129
DpnII GATC 9 cut(s) 34, 106, 202, 618, 715, 972, 976, 1014, 1127
DraI TTTAAA 1 cut(s) 829
EaeI YGGCCR 1 cut(s) 697
Ecl136II GAGCTC 1 cut(s) 56
Eco130I CCWWGG 2 cut(s) 321, 528
Eco24I GRGCYC 1 cut(s) 58
Eco53kI GAGCTC 1 cut(s) 56
Eco57I CTGAAG 1 cut(s) 172
EcoICRI GAGCTC 1 cut(s) 56
EcoRII CCWGG 2 cut(s) 694, 987
EcoT14I CCWWGG 2 cut(s) 321, 528
EcoT38I GRGCYC 1 cut(s) 58
ErhI CCWWGG 2 cut(s) 321, 528
FaeI CATG 5 cut(s) 53, 325, 770, 1015, 1168
FaqI GGGAC 1 cut(s) 566
FatI CATG 5 cut(s) 49, 321, 766, 1011, 1164
FauNDI CATATG 2 cut(s) 652, 1198
FbaI TGATCA 2 cut(s) 106, 1014
Fnu4HI GCNGC 4 cut(s) 116, 226, 822, 1077
FriOI GRGCYC 1 cut(s) 58
Fsp4HI GCNGC 4 cut(s) 116, 226, 822, 1077
FspBI CTAG 2 cut(s) 566, 671
GlaI GCGC 3 cut(s) 84, 224, 570
GluI GCNGC 4 cut(s) 116, 226, 822, 1077
HaeIII GGCC 2 cut(s) 256, 699
HapII CCGG 1 cut(s) 86
HgaI GACGC 1 cut(s) 107
HhaI GCGC 3 cut(s) 85, 225, 571
Hin1II CATG 5 cut(s) 53, 325, 770, 1015, 1168
Hin6I GCGC 3 cut(s) 83, 223, 569
HinP1I GCGC 3 cut(s) 83, 223, 569
HincII GTYRAC 1 cut(s) 1057
HindII GTYRAC 1 cut(s) 1057
HinfI GANTC 5 cut(s) 4, 98, 163, 954, 1253
HpaII CCGG 1 cut(s) 86
HphI GGTGA 4 cut(s) 284, 617, 692, 1262
Hpy166II GTNNAC 3 cut(s) 629, 668, 1057
Hpy188I TCNGA 2 cut(s) 34, 111
Hpy188III TCNNGA 2 cut(s) 206, 1018
Hpy8I GTNNAC 3 cut(s) 629, 668, 1057
Hpy99I CGWCG 1 cut(s) 34
HpyAV CCTTC 4 cut(s) 260, 275, 604, 1082
HpyCH4III ACNGT 4 cut(s) 380, 709, 926, 1115
HpyCH4IV ACGT 1 cut(s) 29
HpyCH4V TGCA 9 cut(s) 479, 548, 638, 821, 881, 1011, 1076, 1196, 1267
HpyF10VI GCNNNNNNNGC 8 cut(s) 124, 497, 524, 830, 998, 1076, 1178, 1187
HpyF3I CTNAG 3 cut(s) 8, 456, 632
HpySE526I ACGT 1 cut(s) 29
Hsp92II CATG 5 cut(s) 53, 325, 770, 1015, 1168
HspAI GCGC 3 cut(s) 83, 223, 569
Ksp22I TGATCA 2 cut(s) 106, 1014
Kzo9I GATC 9 cut(s) 34, 106, 202, 618, 715, 972, 976, 1014, 1127
LmnI GCTCC 9 cut(s) 53, 332, 497, 697, 749, 998, 1067, 1169, 1217
Lsp1109I GCAGC 4 cut(s) 102, 237, 833, 1088
LweI GCATC 1 cut(s) 102
MaeI CTAG 2 cut(s) 566, 671
MaeII ACGT 1 cut(s) 29
MaeIII GTNAC 5 cut(s) 244, 655, 709, 791, 926
MalI GATC 9 cut(s) 36, 108, 204, 620, 717, 974, 978, 1016, 1129
MbiI CCGCTC 1 cut(s) 335
MboI GATC 9 cut(s) 34, 106, 202, 618, 715, 972, 976, 1014, 1127
MboII GAAGA 5 cut(s) 29, 72, 406, 417, 1248
MfeI CAATTG 1 cut(s) 1071
MflI RGATCY 4 cut(s) 34, 202, 715, 1127
MhlI GDGCHC 1 cut(s) 58
MlsI TGGCCA 1 cut(s) 699
MluCI AATT 7 cut(s) 64, 326, 462, 733, 849, 933, 1071
MluNI TGGCCA 1 cut(s) 699
MlyI GAGTC 1 cut(s) 1262
MmeI TCCRAC 4 cut(s) 12, 150, 702, 898
MnlI CCTC 8 cut(s) 298, 451, 667, 676, 816, 948, 1078, 1091
Mox20I TGGCCA 1 cut(s) 699
MroXI GAANNNNTTC 2 cut(s) 64, 1092
MscI TGGCCA 1 cut(s) 699
MseI TTAA 4 cut(s) 180, 219, 828, 1040
MslI CAYNNNNRTG 1 cut(s) 435
Msp20I TGGCCA 1 cut(s) 699
MspI CCGG 1 cut(s) 86
MspR9I CCNGG 2 cut(s) 696, 989
MunI CAATTG 1 cut(s) 1071
MvaI CCWGG 2 cut(s) 696, 989
MvnI CGCG 1 cut(s) 571
MwoI GCNNNNNNNGC 8 cut(s) 124, 497, 524, 830, 998, 1076, 1178, 1187
NcoI CCATGG 1 cut(s) 321
NdeI CATATG 2 cut(s) 652, 1198
NdeII GATC 9 cut(s) 34, 106, 202, 618, 715, 972, 976, 1014, 1127
NheI GCTAGC 1 cut(s) 565
NlaIII CATG 5 cut(s) 53, 325, 770, 1015, 1168
NlaIV GGNNCC 3 cut(s) 751, 1022, 1135
NmuCI GTSAC 3 cut(s) 244, 655, 791
PaqCI CACCTGC 1 cut(s) 668
PdmI GAANNNNTTC 2 cut(s) 64, 1092
PfeI GAWTC 3 cut(s) 98, 163, 954
PflFI GACNNNGTC 1 cut(s) 506
PflMI CCANNNNNTGG 2 cut(s) 1031, 1145
PkrI GCNGC 4 cut(s) 117, 227, 823, 1078
PleI GAGTC 1 cut(s) 1261
PpsI GAGTC 1 cut(s) 1261
Psp124BI GAGCTC 1 cut(s) 58
Psp6I CCWGG 2 cut(s) 694, 987
PspGI CCWGG 2 cut(s) 694, 987
PspN4I GGNNCC 3 cut(s) 751, 1022, 1135
PstNI CAGNNNCTG 2 cut(s) 115, 695
PsuI RGATCY 4 cut(s) 34, 202, 715, 1127
PsyI GACNNNGTC 1 cut(s) 506
RsaI GTAC 3 cut(s) 630, 667, 765
RsaNI GTAC 3 cut(s) 629, 666, 764
RseI CAYNNNNRTG 1 cut(s) 435
SacI GAGCTC 1 cut(s) 58
SaqAI TTAA 4 cut(s) 180, 219, 828, 1040
SatI GCNGC 4 cut(s) 116, 226, 822, 1077
Sau3AI GATC 9 cut(s) 34, 106, 202, 618, 715, 972, 976, 1014, 1127
SchI GAGTC 1 cut(s) 1262
ScrFI CCNGG 2 cut(s) 696, 989
SduI GDGCHC 1 cut(s) 58
SfaNI GCATC 1 cut(s) 102
SfcI CTRYAG 1 cut(s) 376
SmiMI CAYNNNNRTG 1 cut(s) 435
SmlI CTYRAG 1 cut(s) 576
SmoI CTYRAG 1 cut(s) 576
Sse9I AATT 7 cut(s) 64, 326, 462, 733, 849, 933, 1071
SsiI CCGC 1 cut(s) 335
SspI AATATT 1 cut(s) 555
SspMI CTAG 2 cut(s) 566, 671
SstI GAGCTC 1 cut(s) 58
StyD4I CCNGG 2 cut(s) 694, 987
StyI CCWWGG 2 cut(s) 321, 528
TaaI ACNGT 4 cut(s) 380, 709, 926, 1115
TaiI ACGT 1 cut(s) 32
TaqI TCGA 5 cut(s) 58, 68, 207, 975, 1096
TaqII GACCGA 1 cut(s) 35
TasI AATT 7 cut(s) 64, 326, 462, 733, 849, 933, 1071
TatI WGTACW 2 cut(s) 628, 763
TfiI GAWTC 3 cut(s) 98, 163, 954
Tru1I TTAA 4 cut(s) 180, 219, 828, 1040
Tru9I TTAA 4 cut(s) 180, 219, 828, 1040
TseFI GTSAC 3 cut(s) 244, 655, 791
TseI GCWGC 4 cut(s) 115, 225, 821, 1076
Tsp45I GTSAC 3 cut(s) 244, 655, 791
TspDTI ATGAA 2 cut(s) 294, 303
TspGWI ACGGA 2 cut(s) 9, 728
Tth111I GACNNNGTC 1 cut(s) 506
Van91I CCANNNNNTGG 2 cut(s) 1031, 1145
XapI RAATTY 2 cut(s) 64, 849
XmnI GAANNNNTTC 2 cut(s) 64, 1092
XspI CTAG 2 cut(s) 566, 671
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.