Bifunctional 3-dehydroquinate dehydratase shikimate dehydrogenase, chloroplastic-like
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_6g04670 FvH4_6g04670 FvH4_6g04670 |
| malus_domestica | MD04G1213800.v1.1 MD12G1228800.v1.1 |
| prunus_persica | Prupe.6G334000_v2.0.a1 Prupe.6G334000_v2.0.a1 |
| pyrus_communis | pycom04g18930 pycom12g21340 |
| rosa_chinensis | RchiOBHm_Chr3g0453141 |
| rosa_laevigata | RLG00000025534 |
| rosa_multiflora | Rmu_sc0007132.1_g000006 Rmu_sc0013481.1_g000002 |
| rosa_roxburghii | Rroxscaffold_6G00430200 |
| rosa_rugosa | Rorug02G0646800 |
| rosa_samantha | Rh3AG049400 Rh3BG050600 Rh3CG050800 Rh3DG051400 |
| rosa_wichuraiana | Rw3G003790 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 668 |
| Acc36I | ACCTGC | 1 cut(s) | 668 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1031, 1145 |
| AccBSI | CCGCTC | 1 cut(s) | 335 |
| AccII | CGCG | 1 cut(s) | 571 |
| AciI | CCGC | 1 cut(s) | 335 |
| AclWI | GGATC | 4 cut(s) | 42, 723, 971, 1135 |
| AcoI | YGGCCR | 1 cut(s) | 697 |
| AcsI | RAATTY | 2 cut(s) | 64, 849 |
| AcuI | CTGAAG | 1 cut(s) | 172 |
| AfaI | GTAC | 3 cut(s) | 630, 667, 765 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 92, 590, 912, 913, 1031, 1145 |
| AgsI | TTSAA | 9 cut(s) | 41, 353, 389, 560, 844, 958, 1111, 1119, 1260 |
| AjnI | CCWGG | 2 cut(s) | 694, 987 |
| AluBI | AGCT | 8 cut(s) | 56, 500, 692, 950, 1001, 1079, 1145, 1172 |
| AluI | AGCT | 8 cut(s) | 56, 500, 692, 950, 1001, 1079, 1145, 1172 |
| Alw21I | GWGCWC | 1 cut(s) | 58 |
| AlwI | GGATC | 4 cut(s) | 42, 723, 971, 1135 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 115, 695 |
| AoxI | GGCC | 2 cut(s) | 254, 697 |
| ApeKI | GCWGC | 4 cut(s) | 115, 225, 821, 1076 |
| ApoI | RAATTY | 2 cut(s) | 64, 849 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 632, 664 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 64, 1092 |
| AspLEI | GCGC | 3 cut(s) | 85, 225, 571 |
| AsuHPI | GGTGA | 4 cut(s) | 284, 617, 692, 1262 |
| AsuNHI | GCTAGC | 1 cut(s) | 565 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 747, 780 |
| BalI | TGGCCA | 1 cut(s) | 699 |
| BanII | GRGCYC | 1 cut(s) | 58 |
| BauI | CACGAG | 1 cut(s) | 624 |
| BbsI | GAAGAC | 1 cut(s) | 1248 |
| Bbv12I | GWGCWC | 1 cut(s) | 58 |
| BbvCI | CCTCAGC | 1 cut(s) | 456 |
| BbvI | GCAGC | 4 cut(s) | 102, 237, 833, 1088 |
| BccI | CCATC | 3 cut(s) | 457, 595, 1025 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 965, 999 |
| BciT130I | CCWGG | 2 cut(s) | 696, 989 |
| BciVI | GTATCC | 1 cut(s) | 914 |
| BclI | TGATCA | 2 cut(s) | 106, 1014 |
| BfaI | CTAG | 2 cut(s) | 566, 671 |
| BfmI | CTRYAG | 1 cut(s) | 376 |
| BfuAI | ACCTGC | 1 cut(s) | 668 |
| BfuI | GTATCC | 1 cut(s) | 914 |
| BglII | AGATCT | 1 cut(s) | 202 |
| BisI | GCNGC | 4 cut(s) | 116, 226, 822, 1077 |
| BlsI | GCNGC | 4 cut(s) | 117, 227, 823, 1078 |
| Bme1390I | CCNGG | 2 cut(s) | 696, 989 |
| BmiI | GGNNCC | 3 cut(s) | 751, 1022, 1135 |
| BmrFI | CCNGG | 2 cut(s) | 696, 989 |
| BmsI | GCATC | 1 cut(s) | 102 |
| BmtI | GCTAGC | 1 cut(s) | 569 |
| BpiI | GAAGAC | 1 cut(s) | 1248 |
| Bpu10I | CCTNAGC | 1 cut(s) | 456 |
| BpuEI | CTTGAG | 1 cut(s) | 561 |
| Bsa29I | ATCGAT | 1 cut(s) | 975 |
| BsaJI | CCNNGG | 3 cut(s) | 321, 528, 987 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1209, 1239 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 92, 590, 912, 913, 1031, 1145 |
| Bse118I | RCCGGY | 1 cut(s) | 85 |
| Bse3DI | GCAATG | 1 cut(s) | 860 |
| BseBI | CCWGG | 2 cut(s) | 696, 989 |
| BseCI | ATCGAT | 1 cut(s) | 975 |
| BseDI | CCNNGG | 3 cut(s) | 321, 528, 987 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 92, 590, 912, 913, 1031, 1145 |
| BseMI | GCAATG | 1 cut(s) | 860 |
| BseMII | CTCAG | 2 cut(s) | 22, 447 |
| BseXI | GCAGC | 4 cut(s) | 102, 237, 833, 1088 |
| Bsh1236I | CGCG | 1 cut(s) | 571 |
| BshFI | GGCC | 2 cut(s) | 256, 699 |
| BshVI | ATCGAT | 1 cut(s) | 975 |
| BsiHKAI | GWGCWC | 1 cut(s) | 58 |
| BsiSI | CCGG | 1 cut(s) | 86 |
| BslFI | GGGAC | 1 cut(s) | 566 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 92, 590, 912, 913, 1031, 1145 |
| BsmFI | GGGAC | 1 cut(s) | 566 |
| BsnI | GGCC | 2 cut(s) | 256, 699 |
| Bsp1286I | GDGCHC | 1 cut(s) | 58 |
| Bsp143I | GATC | 9 cut(s) | 34, 106, 202, 618, 715, 972, 976, 1014, 1127 |
| Bsp19I | CCATGG | 1 cut(s) | 321 |
| BspACI | CCGC | 1 cut(s) | 335 |
| BspANI | GGCC | 2 cut(s) | 256, 699 |
| BspCNI | CTCAG | 2 cut(s) | 21, 448 |
| BspDI | ATCGAT | 1 cut(s) | 975 |
| BspFNI | CGCG | 1 cut(s) | 571 |
| BspLI | GGNNCC | 3 cut(s) | 751, 1022, 1135 |
| BspMI | ACCTGC | 1 cut(s) | 668 |
| BspOI | GCTAGC | 1 cut(s) | 569 |
| BspPI | GGATC | 4 cut(s) | 42, 723, 971, 1135 |
| BsrBI | CCGCTC | 1 cut(s) | 335 |
| BsrDI | GCAATG | 1 cut(s) | 860 |
| BsrFI | RCCGGY | 1 cut(s) | 85 |
| BssAI | RCCGGY | 1 cut(s) | 85 |
| BssECI | CCNNGG | 3 cut(s) | 321, 528, 987 |
| BssMI | GATC | 9 cut(s) | 34, 106, 202, 618, 715, 972, 976, 1014, 1127 |
| BssSI | CACGAG | 1 cut(s) | 624 |
| BssT1I | CCWWGG | 2 cut(s) | 321, 528 |
| Bst2BI | CACGAG | 1 cut(s) | 624 |
| Bst2UI | CCWGG | 2 cut(s) | 696, 989 |
| Bst4CI | ACNGT | 4 cut(s) | 380, 709, 926, 1115 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 524 |
| BstC8I | GCNNGC | 2 cut(s) | 567, 701 |
| BstDEI | CTNAG | 3 cut(s) | 8, 456, 632 |
| BstDSI | CCRYGG | 1 cut(s) | 321 |
| BstFNI | CGCG | 1 cut(s) | 571 |
| BstHHI | GCGC | 3 cut(s) | 85, 225, 571 |
| BstKTI | GATC | 9 cut(s) | 37, 109, 205, 621, 718, 975, 979, 1017, 1130 |
| BstMBI | GATC | 9 cut(s) | 34, 106, 202, 618, 715, 972, 976, 1014, 1127 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 124, 497, 524, 830, 998, 1076, 1178, 1187 |
| BstNI | CCWGG | 2 cut(s) | 696, 989 |
| BstSCI | CCNGG | 2 cut(s) | 694, 987 |
| BstSFI | CTRYAG | 1 cut(s) | 376 |
| BstUI | CGCG | 1 cut(s) | 571 |
| BstV1I | GCAGC | 4 cut(s) | 102, 237, 833, 1088 |
| BstV2I | GAAGAC | 1 cut(s) | 1248 |
| BstX2I | RGATCY | 4 cut(s) | 34, 202, 715, 1127 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 328 |
| BstYI | RGATCY | 4 cut(s) | 34, 202, 715, 1127 |
| Bsu15I | ATCGAT | 1 cut(s) | 975 |
| BsuI | GTATCC | 1 cut(s) | 914 |
| BsuRI | GGCC | 2 cut(s) | 256, 699 |
| BsuTUI | ATCGAT | 1 cut(s) | 975 |
| BtgI | CCRYGG | 1 cut(s) | 321 |
| BveI | ACCTGC | 1 cut(s) | 668 |
| Cac8I | GCNNGC | 2 cut(s) | 567, 701 |
| CaiI | CAGNNNCTG | 2 cut(s) | 115, 695 |
| CfoI | GCGC | 3 cut(s) | 85, 225, 571 |
| Cfr10I | RCCGGY | 1 cut(s) | 85 |
| ClaI | ATCGAT | 1 cut(s) | 975 |
| CseI | GACGC | 1 cut(s) | 107 |
| Csp6I | GTAC | 3 cut(s) | 629, 666, 764 |
| CviAII | CATG | 5 cut(s) | 50, 322, 767, 1012, 1165 |
| CviQI | GTAC | 3 cut(s) | 629, 666, 764 |
| DdeI | CTNAG | 3 cut(s) | 8, 456, 632 |
| DpnI | GATC | 9 cut(s) | 36, 108, 204, 620, 717, 974, 978, 1016, 1129 |
| DpnII | GATC | 9 cut(s) | 34, 106, 202, 618, 715, 972, 976, 1014, 1127 |
| DraI | TTTAAA | 1 cut(s) | 829 |
| EaeI | YGGCCR | 1 cut(s) | 697 |
| Ecl136II | GAGCTC | 1 cut(s) | 56 |
| Eco130I | CCWWGG | 2 cut(s) | 321, 528 |
| Eco24I | GRGCYC | 1 cut(s) | 58 |
| Eco53kI | GAGCTC | 1 cut(s) | 56 |
| Eco57I | CTGAAG | 1 cut(s) | 172 |
| EcoICRI | GAGCTC | 1 cut(s) | 56 |
| EcoRII | CCWGG | 2 cut(s) | 694, 987 |
| EcoT14I | CCWWGG | 2 cut(s) | 321, 528 |
| EcoT38I | GRGCYC | 1 cut(s) | 58 |
| ErhI | CCWWGG | 2 cut(s) | 321, 528 |
| FaeI | CATG | 5 cut(s) | 53, 325, 770, 1015, 1168 |
| FaqI | GGGAC | 1 cut(s) | 566 |
| FatI | CATG | 5 cut(s) | 49, 321, 766, 1011, 1164 |
| FauNDI | CATATG | 2 cut(s) | 652, 1198 |
| FbaI | TGATCA | 2 cut(s) | 106, 1014 |
| Fnu4HI | GCNGC | 4 cut(s) | 116, 226, 822, 1077 |
| FriOI | GRGCYC | 1 cut(s) | 58 |
| Fsp4HI | GCNGC | 4 cut(s) | 116, 226, 822, 1077 |
| FspBI | CTAG | 2 cut(s) | 566, 671 |
| GlaI | GCGC | 3 cut(s) | 84, 224, 570 |
| GluI | GCNGC | 4 cut(s) | 116, 226, 822, 1077 |
| HaeIII | GGCC | 2 cut(s) | 256, 699 |
| HapII | CCGG | 1 cut(s) | 86 |
| HgaI | GACGC | 1 cut(s) | 107 |
| HhaI | GCGC | 3 cut(s) | 85, 225, 571 |
| Hin1II | CATG | 5 cut(s) | 53, 325, 770, 1015, 1168 |
| Hin6I | GCGC | 3 cut(s) | 83, 223, 569 |
| HinP1I | GCGC | 3 cut(s) | 83, 223, 569 |
| HincII | GTYRAC | 1 cut(s) | 1057 |
| HindII | GTYRAC | 1 cut(s) | 1057 |
| HinfI | GANTC | 5 cut(s) | 4, 98, 163, 954, 1253 |
| HpaII | CCGG | 1 cut(s) | 86 |
| HphI | GGTGA | 4 cut(s) | 284, 617, 692, 1262 |
| Hpy166II | GTNNAC | 3 cut(s) | 629, 668, 1057 |
| Hpy188I | TCNGA | 2 cut(s) | 34, 111 |
| Hpy188III | TCNNGA | 2 cut(s) | 206, 1018 |
| Hpy8I | GTNNAC | 3 cut(s) | 629, 668, 1057 |
| Hpy99I | CGWCG | 1 cut(s) | 34 |
| HpyAV | CCTTC | 4 cut(s) | 260, 275, 604, 1082 |
| HpyCH4III | ACNGT | 4 cut(s) | 380, 709, 926, 1115 |
| HpyCH4IV | ACGT | 1 cut(s) | 29 |
| HpyCH4V | TGCA | 9 cut(s) | 479, 548, 638, 821, 881, 1011, 1076, 1196, 1267 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 124, 497, 524, 830, 998, 1076, 1178, 1187 |
| HpyF3I | CTNAG | 3 cut(s) | 8, 456, 632 |
| HpySE526I | ACGT | 1 cut(s) | 29 |
| Hsp92II | CATG | 5 cut(s) | 53, 325, 770, 1015, 1168 |
| HspAI | GCGC | 3 cut(s) | 83, 223, 569 |
| Ksp22I | TGATCA | 2 cut(s) | 106, 1014 |
| Kzo9I | GATC | 9 cut(s) | 34, 106, 202, 618, 715, 972, 976, 1014, 1127 |
| LmnI | GCTCC | 9 cut(s) | 53, 332, 497, 697, 749, 998, 1067, 1169, 1217 |
| Lsp1109I | GCAGC | 4 cut(s) | 102, 237, 833, 1088 |
| LweI | GCATC | 1 cut(s) | 102 |
| MaeI | CTAG | 2 cut(s) | 566, 671 |
| MaeII | ACGT | 1 cut(s) | 29 |
| MaeIII | GTNAC | 5 cut(s) | 244, 655, 709, 791, 926 |
| MalI | GATC | 9 cut(s) | 36, 108, 204, 620, 717, 974, 978, 1016, 1129 |
| MbiI | CCGCTC | 1 cut(s) | 335 |
| MboI | GATC | 9 cut(s) | 34, 106, 202, 618, 715, 972, 976, 1014, 1127 |
| MboII | GAAGA | 5 cut(s) | 29, 72, 406, 417, 1248 |
| MfeI | CAATTG | 1 cut(s) | 1071 |
| MflI | RGATCY | 4 cut(s) | 34, 202, 715, 1127 |
| MhlI | GDGCHC | 1 cut(s) | 58 |
| MlsI | TGGCCA | 1 cut(s) | 699 |
| MluCI | AATT | 7 cut(s) | 64, 326, 462, 733, 849, 933, 1071 |
| MluNI | TGGCCA | 1 cut(s) | 699 |
| MlyI | GAGTC | 1 cut(s) | 1262 |
| MmeI | TCCRAC | 4 cut(s) | 12, 150, 702, 898 |
| MnlI | CCTC | 8 cut(s) | 298, 451, 667, 676, 816, 948, 1078, 1091 |
| Mox20I | TGGCCA | 1 cut(s) | 699 |
| MroXI | GAANNNNTTC | 2 cut(s) | 64, 1092 |
| MscI | TGGCCA | 1 cut(s) | 699 |
| MseI | TTAA | 4 cut(s) | 180, 219, 828, 1040 |
| MslI | CAYNNNNRTG | 1 cut(s) | 435 |
| Msp20I | TGGCCA | 1 cut(s) | 699 |
| MspI | CCGG | 1 cut(s) | 86 |
| MspR9I | CCNGG | 2 cut(s) | 696, 989 |
| MunI | CAATTG | 1 cut(s) | 1071 |
| MvaI | CCWGG | 2 cut(s) | 696, 989 |
| MvnI | CGCG | 1 cut(s) | 571 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 124, 497, 524, 830, 998, 1076, 1178, 1187 |
| NcoI | CCATGG | 1 cut(s) | 321 |
| NdeI | CATATG | 2 cut(s) | 652, 1198 |
| NdeII | GATC | 9 cut(s) | 34, 106, 202, 618, 715, 972, 976, 1014, 1127 |
| NheI | GCTAGC | 1 cut(s) | 565 |
| NlaIII | CATG | 5 cut(s) | 53, 325, 770, 1015, 1168 |
| NlaIV | GGNNCC | 3 cut(s) | 751, 1022, 1135 |
| NmuCI | GTSAC | 3 cut(s) | 244, 655, 791 |
| PaqCI | CACCTGC | 1 cut(s) | 668 |
| PdmI | GAANNNNTTC | 2 cut(s) | 64, 1092 |
| PfeI | GAWTC | 3 cut(s) | 98, 163, 954 |
| PflFI | GACNNNGTC | 1 cut(s) | 506 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1031, 1145 |
| PkrI | GCNGC | 4 cut(s) | 117, 227, 823, 1078 |
| PleI | GAGTC | 1 cut(s) | 1261 |
| PpsI | GAGTC | 1 cut(s) | 1261 |
| Psp124BI | GAGCTC | 1 cut(s) | 58 |
| Psp6I | CCWGG | 2 cut(s) | 694, 987 |
| PspGI | CCWGG | 2 cut(s) | 694, 987 |
| PspN4I | GGNNCC | 3 cut(s) | 751, 1022, 1135 |
| PstNI | CAGNNNCTG | 2 cut(s) | 115, 695 |
| PsuI | RGATCY | 4 cut(s) | 34, 202, 715, 1127 |
| PsyI | GACNNNGTC | 1 cut(s) | 506 |
| RsaI | GTAC | 3 cut(s) | 630, 667, 765 |
| RsaNI | GTAC | 3 cut(s) | 629, 666, 764 |
| RseI | CAYNNNNRTG | 1 cut(s) | 435 |
| SacI | GAGCTC | 1 cut(s) | 58 |
| SaqAI | TTAA | 4 cut(s) | 180, 219, 828, 1040 |
| SatI | GCNGC | 4 cut(s) | 116, 226, 822, 1077 |
| Sau3AI | GATC | 9 cut(s) | 34, 106, 202, 618, 715, 972, 976, 1014, 1127 |
| SchI | GAGTC | 1 cut(s) | 1262 |
| ScrFI | CCNGG | 2 cut(s) | 696, 989 |
| SduI | GDGCHC | 1 cut(s) | 58 |
| SfaNI | GCATC | 1 cut(s) | 102 |
| SfcI | CTRYAG | 1 cut(s) | 376 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 435 |
| SmlI | CTYRAG | 1 cut(s) | 576 |
| SmoI | CTYRAG | 1 cut(s) | 576 |
| Sse9I | AATT | 7 cut(s) | 64, 326, 462, 733, 849, 933, 1071 |
| SsiI | CCGC | 1 cut(s) | 335 |
| SspI | AATATT | 1 cut(s) | 555 |
| SspMI | CTAG | 2 cut(s) | 566, 671 |
| SstI | GAGCTC | 1 cut(s) | 58 |
| StyD4I | CCNGG | 2 cut(s) | 694, 987 |
| StyI | CCWWGG | 2 cut(s) | 321, 528 |
| TaaI | ACNGT | 4 cut(s) | 380, 709, 926, 1115 |
| TaiI | ACGT | 1 cut(s) | 32 |
| TaqI | TCGA | 5 cut(s) | 58, 68, 207, 975, 1096 |
| TaqII | GACCGA | 1 cut(s) | 35 |
| TasI | AATT | 7 cut(s) | 64, 326, 462, 733, 849, 933, 1071 |
| TatI | WGTACW | 2 cut(s) | 628, 763 |
| TfiI | GAWTC | 3 cut(s) | 98, 163, 954 |
| Tru1I | TTAA | 4 cut(s) | 180, 219, 828, 1040 |
| Tru9I | TTAA | 4 cut(s) | 180, 219, 828, 1040 |
| TseFI | GTSAC | 3 cut(s) | 244, 655, 791 |
| TseI | GCWGC | 4 cut(s) | 115, 225, 821, 1076 |
| Tsp45I | GTSAC | 3 cut(s) | 244, 655, 791 |
| TspDTI | ATGAA | 2 cut(s) | 294, 303 |
| TspGWI | ACGGA | 2 cut(s) | 9, 728 |
| Tth111I | GACNNNGTC | 1 cut(s) | 506 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1031, 1145 |
| XapI | RAATTY | 2 cut(s) | 64, 849 |
| XmnI | GAANNNNTTC | 2 cut(s) | 64, 1092 |
| XspI | CTAG | 2 cut(s) | 566, 671 |