Rmu_sc0007132.1_g000006

Bifunctional 3-dehydroquinate dehydratase shikimate dehydrogenase, chloroplastic-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007132.1
Physical Location & Seq
Forward (+)
22850 .. 27042
4193 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007132.1_g000006.1.cds

Sequence Viewer

Length: 1443 bp
atgactctcagcagtattccgttggctacgtcggatcttcaaatcagtcatggagcccgaagaaattcgacactaatctgtgcgccggtaatgggggaatcagttgatcagatgctgcgtcaagtgcgacaggcaaaggaacttggtgctgaccttgttgagattcggttggactacattaagaacttcagtccaagacaagatctcgaaactttgattaagcgcagccctttgccaacactcgtcacttacaggccaaaatgggaaggtggtgagtatgaaggagatgaaaataagcgacaacaggcactcattttagccatggaattgggagcggattatattgatgttgaactaaaggtagcaaatgacttctacagttctattcaagggaagaagccagaaaaggtcaaaatcatagtttcttcccacaactatgagaatactccatctgctgaggaaattggcaatcttgttgcaacaatacaagctactggagctgacatagtcaaggtcgcaacaactgccttggacataacggacaatgcaagaatatttcaagtgctagcgcgttctcaagtcccaatgataggacttttgatgggtgagaagggtttgatctctcgtgtacttagtgcaaaatatgggtcatatgtcacatttggtacactagaggcaggtgaggtatcagctcctggccagccaactgtaacggatctgttggagttatacaattttaggcagattggagccaataccaaagtacatggtgtgataggaaatcctattggtcacagcaaaagtcctcatctttacaatgcagcatttaaagcaaataacttcaatggaatttatttgccattgctggttgatagcgttgcaaactttatcaacacctataactcccctgattgggttggatacagttacacaattcctcacaaagaagctggattcaaatgttgtgatgagatcgatcctaatgaaaggttatttgtggtcatgggagctggtggtgctggaaaggcgcttgcatatggtggaaaacaaaagggagcaagagttgtcgttgccaatcgctcatttgacaaagccaagatactggccgacaaagttggaggagaagctattactcttgctgagttggcaaacttccatccagaggatggtatggttcttgcaaataccacatctgttggaatgaaaccaagaactgatcaaacacccatcccaaaggaagctctgatgaactactgtttggtatttgatgccatttatacacctaaatggaccagactcttgaccgaagcacaagagtctggagcagctgtggtttttgggacagaaatgttccttaaccaagcatttgtacaggtcgaaaagttttctggtatacctgcaaataagcaactgatcagggatacattggcaagaaacacatga

Protein Analysis

480

Amino Acids

52.41

Weight (kDa)

6.23

Isoelectric Point (pI)

23.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 668
Acc36I ACCTGC 2 cut(s) 668, 1405
AccB7I CCANNNNNTGG 1 cut(s) 1166
AccBSI CCGCTC 1 cut(s) 335
AccI GTMKAC 1 cut(s) 1393
AccII CGCG 1 cut(s) 571
AciI CCGC 1 cut(s) 335
AclWI GGATC 3 cut(s) 42, 723, 971
AcoI YGGCCR 2 cut(s) 697, 1104
AcsI RAATTY 2 cut(s) 64, 849
AcuI CTGAAG 1 cut(s) 172
AfaI GTAC 4 cut(s) 630, 667, 765, 1371
AfiI CCNNNNNNNGG 6 cut(s) 92, 590, 912, 913, 1162, 1166
AgsI TTSAA 6 cut(s) 41, 353, 389, 560, 844, 958
AjnI CCWGG 1 cut(s) 694
AjuI GAANNNNNNNTTGG 2 cut(s) 1241, 1273
AluBI AGCT 8 cut(s) 491, 500, 692, 950, 1010, 1127, 1241, 1328
AluI AGCT 8 cut(s) 491, 500, 692, 950, 1010, 1127, 1241, 1328
AlwI GGATC 3 cut(s) 42, 723, 971
AlwNI CAGNNNCTG 2 cut(s) 115, 695
AoxI GGCC 3 cut(s) 254, 697, 1104
ApeKI GCWGC 4 cut(s) 115, 225, 821, 1325
ApoI RAATTY 2 cut(s) 64, 849
ArsI GACNNNNNNTTYG 2 cut(s) 632, 664
Asp700I GAANNNNTTC 1 cut(s) 64
AspLEI GCGC 4 cut(s) 85, 225, 571, 1030
AspS9I GGNCC 1 cut(s) 1290
AsuHPI GGTGA 3 cut(s) 284, 617, 692
AsuNHI GCTAGC 1 cut(s) 565
AvaII GGWCC 1 cut(s) 1290
BalI TGGCCA 1 cut(s) 699
BanII GRGCYC 1 cut(s) 58
BauI CACGAG 1 cut(s) 624
BbvCI CCTCAGC 1 cut(s) 456
BbvI GCAGC 4 cut(s) 102, 237, 833, 1337
BccI CCATC 5 cut(s) 457, 595, 1160, 1164, 1235
BciT130I CCWGG 1 cut(s) 696
BciVI GTATCC 2 cut(s) 914, 1414
BclI TGATCA 3 cut(s) 106, 1216, 1413
BfaI CTAG 2 cut(s) 566, 671
BfmI CTRYAG 1 cut(s) 376
BfoI RGCGCY 1 cut(s) 1031
BfuAI ACCTGC 2 cut(s) 668, 1405
BfuI GTATCC 2 cut(s) 914, 1414
BglII AGATCT 1 cut(s) 202
BisI GCNGC 4 cut(s) 116, 226, 822, 1326
BlsI GCNGC 4 cut(s) 117, 227, 823, 1327
Bme1390I CCNGG 1 cut(s) 696
Bme18I GGWCC 1 cut(s) 1290
BmgT120I GGNCC 1 cut(s) 1290
BmiI GGNNCC 2 cut(s) 55, 751
BmrFI CCNGG 1 cut(s) 696
BmsI GCATC 2 cut(s) 102, 1258
BmtI GCTAGC 1 cut(s) 569
BpmI CTGGAG 2 cut(s) 516, 1341
Bpu10I CCTNAGC 1 cut(s) 456
BpuEI CTTGAG 1 cut(s) 561
Bsa29I ATCGAT 1 cut(s) 975
BsaJI CCNNGG 2 cut(s) 321, 528
BsaXI ACNNNNNCTCC 4 cut(s) 1047, 1077, 1314, 1344
Bsc4I CCNNNNNNNGG 6 cut(s) 92, 590, 912, 913, 1162, 1166
Bse118I RCCGGY 1 cut(s) 85
Bse1I ACTGG 2 cut(s) 499, 1107
Bse3DI GCAATG 1 cut(s) 860
BseBI CCWGG 1 cut(s) 696
BseCI ATCGAT 1 cut(s) 975
BseDI CCNNGG 2 cut(s) 321, 528
BseGI GGATG 3 cut(s) 1156, 1171, 1227
BseLI CCNNNNNNNGG 6 cut(s) 92, 590, 912, 913, 1162, 1166
BseMI GCAATG 1 cut(s) 860
BseMII CTCAG 3 cut(s) 22, 447, 1131
BseNI ACTGG 2 cut(s) 499, 1107
BseRI GAGGAG 1 cut(s) 1134
BseXI GCAGC 4 cut(s) 102, 237, 833, 1337
Bsh1236I CGCG 1 cut(s) 571
BshFI GGCC 3 cut(s) 256, 699, 1106
BshVI ATCGAT 1 cut(s) 975
BsiSI CCGG 1 cut(s) 86
BslFI GGGAC 2 cut(s) 566, 1354
BslI CCNNNNNNNGG 6 cut(s) 92, 590, 912, 913, 1162, 1166
BsmFI GGGAC 2 cut(s) 566, 1354
BsnI GGCC 3 cut(s) 256, 699, 1106
Bsp1286I GDGCHC 1 cut(s) 58
Bsp1407I TGTACA 1 cut(s) 1369
Bsp143I GATC 9 cut(s) 34, 106, 202, 618, 715, 972, 976, 1216, 1413
Bsp19I CCATGG 1 cut(s) 321
BspACI CCGC 1 cut(s) 335
BspANI GGCC 3 cut(s) 256, 699, 1106
BspCNI CTCAG 3 cut(s) 21, 448, 1132
BspDI ATCGAT 1 cut(s) 975
BspFNI CGCG 1 cut(s) 571
BspLI GGNNCC 2 cut(s) 55, 751
BspMI ACCTGC 2 cut(s) 668, 1405
BspOI GCTAGC 1 cut(s) 569
BspPI GGATC 3 cut(s) 42, 723, 971
BsrBI CCGCTC 1 cut(s) 335
BsrDI GCAATG 1 cut(s) 860
BsrFI RCCGGY 1 cut(s) 85
BsrGI TGTACA 1 cut(s) 1369
BsrI ACTGG 2 cut(s) 499, 1107
BssAI RCCGGY 1 cut(s) 85
BssECI CCNNGG 2 cut(s) 321, 528
BssMI GATC 9 cut(s) 34, 106, 202, 618, 715, 972, 976, 1216, 1413
BssNAI GTATAC 1 cut(s) 1394
BssSI CACGAG 1 cut(s) 624
BssT1I CCWWGG 2 cut(s) 321, 528
Bst1107I GTATAC 1 cut(s) 1394
Bst2BI CACGAG 1 cut(s) 624
Bst2UI CCWGG 1 cut(s) 696
Bst4CI ACNGT 4 cut(s) 380, 709, 926, 1256
BstAPI GCANNNNNTGC 1 cut(s) 524
BstAUI TGTACA 1 cut(s) 1369
BstC8I GCNNGC 3 cut(s) 567, 701, 1032
BstDEI CTNAG 4 cut(s) 8, 456, 632, 1140
BstDSI CCRYGG 1 cut(s) 321
BstF5I GGATG 3 cut(s) 1156, 1171, 1227
BstFNI CGCG 1 cut(s) 571
BstH2I RGCGCY 1 cut(s) 1031
BstHHI GCGC 4 cut(s) 85, 225, 571, 1030
BstKTI GATC 9 cut(s) 37, 109, 205, 621, 718, 975, 979, 1219, 1416
BstMBI GATC 9 cut(s) 34, 106, 202, 618, 715, 972, 976, 1216, 1413
BstMWI GCNNNNNNNGC 7 cut(s) 124, 497, 524, 830, 1016, 1025, 1145
BstNI CCWGG 1 cut(s) 696
BstSCI CCNGG 1 cut(s) 694
BstSFI CTRYAG 1 cut(s) 376
BstUI CGCG 1 cut(s) 571
BstV1I GCAGC 4 cut(s) 102, 237, 833, 1337
BstX2I RGATCY 3 cut(s) 34, 202, 715
BstXI CCANNNNNNTGG 2 cut(s) 328, 1102
BstYI RGATCY 3 cut(s) 34, 202, 715
BstZ17I GTATAC 1 cut(s) 1394
Bsu15I ATCGAT 1 cut(s) 975
BsuI GTATCC 2 cut(s) 914, 1414
BsuRI GGCC 3 cut(s) 256, 699, 1106
BsuTUI ATCGAT 1 cut(s) 975
BtgI CCRYGG 1 cut(s) 321
BtsCI GGATG 3 cut(s) 1156, 1171, 1227
BveI ACCTGC 2 cut(s) 668, 1405
Cac8I GCNNGC 3 cut(s) 567, 701, 1032
CaiI CAGNNNCTG 2 cut(s) 115, 695
CfoI GCGC 4 cut(s) 85, 225, 571, 1030
Cfr10I RCCGGY 1 cut(s) 85
Cfr13I GGNCC 1 cut(s) 1290
ClaI ATCGAT 1 cut(s) 975
CseI GACGC 1 cut(s) 107
Csp6I GTAC 4 cut(s) 629, 666, 764, 1370
CspCI CAANNNNNGTGG 2 cut(s) 1177, 1212
CviAII CATG 5 cut(s) 50, 322, 767, 1003, 1440
CviQI GTAC 4 cut(s) 629, 666, 764, 1370
DdeI CTNAG 4 cut(s) 8, 456, 632, 1140
DpnI GATC 9 cut(s) 36, 108, 204, 620, 717, 974, 978, 1218, 1415
DpnII GATC 9 cut(s) 34, 106, 202, 618, 715, 972, 976, 1216, 1413
DraI TTTAAA 1 cut(s) 829
EaeI YGGCCR 2 cut(s) 697, 1104
Eco130I CCWWGG 2 cut(s) 321, 528
Eco24I GRGCYC 1 cut(s) 58
Eco47I GGWCC 1 cut(s) 1290
Eco57I CTGAAG 1 cut(s) 172
EcoRII CCWGG 1 cut(s) 694
EcoT14I CCWWGG 2 cut(s) 321, 528
EcoT38I GRGCYC 1 cut(s) 58
ErhI CCWWGG 2 cut(s) 321, 528
FaeI CATG 5 cut(s) 53, 325, 770, 1006, 1443
FaqI GGGAC 2 cut(s) 566, 1354
FatI CATG 5 cut(s) 49, 321, 766, 1002, 1439
FauNDI CATATG 2 cut(s) 652, 1036
FbaI TGATCA 3 cut(s) 106, 1216, 1413
FblI GTMKAC 1 cut(s) 1393
Fnu4HI GCNGC 4 cut(s) 116, 226, 822, 1326
FokI GGATG 3 cut(s) 1143, 1178, 1214
FriOI GRGCYC 1 cut(s) 58
Fsp4HI GCNGC 4 cut(s) 116, 226, 822, 1326
FspBI CTAG 2 cut(s) 566, 671
GlaI GCGC 4 cut(s) 84, 224, 570, 1029
GluI GCNGC 4 cut(s) 116, 226, 822, 1326
GsuI CTGGAG 2 cut(s) 516, 1341
HaeII RGCGCY 1 cut(s) 1031
HaeIII GGCC 3 cut(s) 256, 699, 1106
HapII CCGG 1 cut(s) 86
HgaI GACGC 1 cut(s) 107
HhaI GCGC 4 cut(s) 85, 225, 571, 1030
Hin1II CATG 5 cut(s) 53, 325, 770, 1006, 1443
Hin6I GCGC 4 cut(s) 83, 223, 569, 1028
HinP1I GCGC 4 cut(s) 83, 223, 569, 1028
HinfI GANTC 6 cut(s) 4, 98, 163, 954, 1296, 1316
HpaII CCGG 1 cut(s) 86
HphI GGTGA 3 cut(s) 284, 617, 692
Hpy166II GTNNAC 3 cut(s) 629, 668, 1394
Hpy188I TCNGA 3 cut(s) 34, 111, 1245
Hpy188III TCNNGA 4 cut(s) 206, 1160, 1300, 1320
Hpy8I GTNNAC 3 cut(s) 629, 668, 1394
Hpy99I CGWCG 1 cut(s) 34
HpyAV CCTTC 3 cut(s) 260, 275, 604
HpyCH4III ACNGT 4 cut(s) 380, 709, 926, 1256
HpyCH4IV ACGT 1 cut(s) 29
HpyCH4V TGCA 8 cut(s) 479, 548, 638, 821, 881, 1034, 1181, 1400
HpyF10VI GCNNNNNNNGC 7 cut(s) 124, 497, 524, 830, 1016, 1025, 1145
HpyF3I CTNAG 4 cut(s) 8, 456, 632, 1140
HpySE526I ACGT 1 cut(s) 29
Hsp92II CATG 5 cut(s) 53, 325, 770, 1006, 1443
HspAI GCGC 4 cut(s) 83, 223, 569, 1028
Ksp22I TGATCA 3 cut(s) 106, 1216, 1413
Kzo9I GATC 9 cut(s) 34, 106, 202, 618, 715, 972, 976, 1216, 1413
LmnI GCTCC 8 cut(s) 53, 332, 497, 697, 749, 1007, 1055, 1322
Lsp1109I GCAGC 4 cut(s) 102, 237, 833, 1337
LweI GCATC 2 cut(s) 102, 1258
MaeI CTAG 2 cut(s) 566, 671
MaeII ACGT 1 cut(s) 29
MaeIII GTNAC 5 cut(s) 244, 655, 709, 791, 926
MalI GATC 9 cut(s) 36, 108, 204, 620, 717, 974, 978, 1218, 1415
MbiI CCGCTC 1 cut(s) 335
MboI GATC 9 cut(s) 34, 106, 202, 618, 715, 972, 976, 1216, 1413
MboII GAAGA 4 cut(s) 29, 72, 406, 417
MflI RGATCY 3 cut(s) 34, 202, 715
MhlI GDGCHC 1 cut(s) 58
MlsI TGGCCA 1 cut(s) 699
MluCI AATT 6 cut(s) 64, 326, 462, 733, 849, 933
MluNI TGGCCA 1 cut(s) 699
MlyI GAGTC 2 cut(s) 1290, 1325
MmeI TCCRAC 6 cut(s) 12, 150, 702, 898, 1096, 1177
MnlI CCTC 7 cut(s) 451, 667, 676, 816, 948, 1112, 1156
Mox20I TGGCCA 1 cut(s) 699
MroXI GAANNNNTTC 1 cut(s) 64
MscI TGGCCA 1 cut(s) 699
MseI TTAA 4 cut(s) 180, 219, 828, 1356
MslI CAYNNNNRTG 2 cut(s) 435, 1285
Msp20I TGGCCA 1 cut(s) 699
MspA1I CMGCKG 1 cut(s) 1328
MspI CCGG 1 cut(s) 86
MspR9I CCNGG 1 cut(s) 696
MvaI CCWGG 1 cut(s) 696
MvnI CGCG 1 cut(s) 571
MwoI GCNNNNNNNGC 7 cut(s) 124, 497, 524, 830, 1016, 1025, 1145
NcoI CCATGG 1 cut(s) 321
NdeI CATATG 2 cut(s) 652, 1036
NdeII GATC 9 cut(s) 34, 106, 202, 618, 715, 972, 976, 1216, 1413
NheI GCTAGC 1 cut(s) 565
NlaIII CATG 5 cut(s) 53, 325, 770, 1006, 1443
NlaIV GGNNCC 2 cut(s) 55, 751
NmuCI GTSAC 3 cut(s) 244, 655, 791
PaqCI CACCTGC 1 cut(s) 668
PdmI GAANNNNTTC 1 cut(s) 64
PfeI GAWTC 3 cut(s) 98, 163, 954
PflFI GACNNNGTC 1 cut(s) 506
PflMI CCANNNNNTGG 1 cut(s) 1166
PkrI GCNGC 4 cut(s) 117, 227, 823, 1327
PleI GAGTC 2 cut(s) 1290, 1324
PpsI GAGTC 2 cut(s) 1290, 1324
Psp6I CCWGG 1 cut(s) 694
PspGI CCWGG 1 cut(s) 694
PspN4I GGNNCC 2 cut(s) 55, 751
PspPI GGNCC 1 cut(s) 1290
PstNI CAGNNNCTG 2 cut(s) 115, 695
PsuI RGATCY 3 cut(s) 34, 202, 715
PsyI GACNNNGTC 1 cut(s) 506
PvuII CAGCTG 1 cut(s) 1328
RsaI GTAC 4 cut(s) 630, 667, 765, 1371
RsaNI GTAC 4 cut(s) 629, 666, 764, 1370
RseI CAYNNNNRTG 2 cut(s) 435, 1285
SaqAI TTAA 4 cut(s) 180, 219, 828, 1356
SatI GCNGC 4 cut(s) 116, 226, 822, 1326
Sau3AI GATC 9 cut(s) 34, 106, 202, 618, 715, 972, 976, 1216, 1413
Sau96I GGNCC 1 cut(s) 1290
SchI GAGTC 2 cut(s) 1290, 1325
ScrFI CCNGG 1 cut(s) 696
SduI GDGCHC 1 cut(s) 58
SfaNI GCATC 2 cut(s) 102, 1258
SfcI CTRYAG 1 cut(s) 376
SinI GGWCC 1 cut(s) 1290
SmiMI CAYNNNNRTG 2 cut(s) 435, 1285
SmlI CTYRAG 1 cut(s) 576
SmoI CTYRAG 1 cut(s) 576
Sse9I AATT 6 cut(s) 64, 326, 462, 733, 849, 933
SsiI CCGC 1 cut(s) 335
SspI AATATT 1 cut(s) 555
SspMI CTAG 2 cut(s) 566, 671
StyD4I CCNGG 1 cut(s) 694
StyI CCWWGG 2 cut(s) 321, 528
TaaI ACNGT 4 cut(s) 380, 709, 926, 1256
TaiI ACGT 1 cut(s) 32
TaqI TCGA 4 cut(s) 68, 207, 975, 1377
TaqII GACCGA 1 cut(s) 1319
TasI AATT 6 cut(s) 64, 326, 462, 733, 849, 933
TatI WGTACW 3 cut(s) 628, 763, 1369
TfiI GAWTC 3 cut(s) 98, 163, 954
Tru1I TTAA 4 cut(s) 180, 219, 828, 1356
Tru9I TTAA 4 cut(s) 180, 219, 828, 1356
TseFI GTSAC 3 cut(s) 244, 655, 791
TseI GCWGC 4 cut(s) 115, 225, 821, 1325
Tsp45I GTSAC 3 cut(s) 244, 655, 791
TspDTI ATGAA 5 cut(s) 294, 303, 999, 1217, 1262
TspGWI ACGGA 3 cut(s) 9, 554, 728
Tth111I GACNNNGTC 1 cut(s) 506
Van91I CCANNNNNTGG 1 cut(s) 1166
VpaK11BI GGWCC 1 cut(s) 1290
XapI RAATTY 2 cut(s) 64, 849
XcmI CCANNNNNNNNNTGG 1 cut(s) 1163
XmiI GTMKAC 1 cut(s) 1393
XmnI GAANNNNTTC 1 cut(s) 64
XspI CTAG 2 cut(s) 566, 671
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.