pycom12g21340

Bifunctional 3-dehydroquinate dehydratase shikimate dehydrogenase, chloroplastic-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
Physical Location & Seq
Reverse (-)
22519830 .. 22523617
3788 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g21340.10

Sequence Viewer

Length: 1554 bp
ATGGATGGAAGTCGAAGAAATTCGACACTGATATGTGCGCCGGTGATGGCGGAATCAGTTGGTCAGATGCTGGTCCAAATGGGGAAGGCAAAGGAAGTTGGCGCTGATCTCGTTGAAATTCGGGTGGATTTCTTGAAGAACTTCAATCCAAGACAAGATCTCGGCGCGTTGATTAACCAAAGTCCTTTGCCCACCCTTGTCACTTACAGGCCATCATGGGAAGGTGGACAGTATAAGGGCGACGACAAACAGCGACAAGATGCACTGCGTGTAGCCATGGAATTGGGAGCGGATTTTATCGATGTTGAACTTAAGGTGGCCGATGAGTTCTACAATTCCATTCAAGGGAAGAAGCCGGAAAAGGTCAAAATCATCGTTTCGTCACACAACTATGAGAAAACTCCGTCCTCTGAGGAAATAGGTGATCTTGTTGCAAGGATACAAGCTACGGGAGCTGACATAGTTAAGATCGCAACAACTGCCTTAGACATCACCGACTCTGCACGTGTATTTCAAGTATTAGTGCATTCTCAAGTCCCAATGATAGCACTTGTTATGGGCGAGAAGGGTTTGATCTCACGCGTTCTTAGTGCAAAGTATGGTGCATTCCTCACATTTGGTACGATAGAGGCTGGAGTAGTATCAGCCCCTGGCCAGCCCACCGTAAGAGATCTATTGGACTTATACAATTTCAGACTTATAGGAGCCGATACCAAAGTACATGGTGTGATAGGAAATCCTATTCGTCACAGCAATTGCCCTCATCTTTACAATGCAGCATTCAAATCTATCAATTTCAATGGAATTTATCTGCCTTTGTTGGTTGATAACGTTGCAAATTTTATTGATACCTACAACTCACCGGATTTCGCTGGATACAGTTATACAATTCCTCACAAGGAGGCAGGATTGAAATGCTGCGATGAAATCGATCCACATGCCAAGGAAATAGGAGCTATTAATTGCATGATCAGGAACCCGGCTGATGGGAAATTAAAAGGCTACAATGTTGACTATCTAGGAGCAATTGCGGCAATTGAGGAAGGACTGCGAGCGTTGAATGGTTCAAGTAATGGATCTGGTTCCCCGTTAGCCGGTAAATTATTCGTGGTCATGGGAGCTGGTGCTGCTGGAACAGCACTTGCATATGGCGGAAAACAAAAGGGAGCAAGAGTGGTAGTTGCCAATCGCACGTATGACAAAGCCAAGGCACTTGCAAATAAAGTTGGAGGAGAAGCTATTACTCTCGCGGAATTGGAAACTTTCCATCCAGAGGATGGAATGGTTCTTGCAAACGCCACATCCGTTGGAATGGAACCAAGAATTGATCAAACACCGTTATCCAAGAACGCTTTGAAGAACTATTCTTTAGTGTTTGATGCCATTTATACACCTACATGGACAAGACTCTTACAAGAAGCACAAGAGTGTGGAGCAGCCGTTGCTTTCGGGACAGAAATGTTCCTCAATCAAGCATTTGTACAGGTTGAAAAGTTTTCTGGTTCACCTGCACCAAAGCATCTGATCAGGGATGTGTTGGCAAGAAATACATGA

Protein Analysis

518

Amino Acids

55.72

Weight (kDa)

6.19

Isoelectric Point (pI)

23.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1516
Acc36I ACCTGC 1 cut(s) 1516
AccB7I CCANNNNNTGG 1 cut(s) 1277
AccBSI CCGCTC 1 cut(s) 290
AccII CGCG 3 cut(s) 167, 582, 1250
AciI CCGC 5 cut(s) 50, 290, 1031, 1152, 1250
AclI AACGTT 1 cut(s) 831
AclWI GGATC 2 cut(s) 926, 1084
AcoI YGGCCR 2 cut(s) 318, 652
AcsI RAATTY 4 cut(s) 19, 117, 804, 838
AcvI CACGTG 1 cut(s) 506
AdeI CACNNNGTG 1 cut(s) 269
AfaI GTAC 3 cut(s) 622, 720, 1482
AfiI CCNNNNNNNGG 5 cut(s) 345, 986, 1094, 1273, 1277
AflII CTTAAG 1 cut(s) 311
AflIII ACRYGT 2 cut(s) 505, 580
AjnI CCWGG 1 cut(s) 649
AleI CACNNNNGTG 1 cut(s) 1426
AluBI AGCT 5 cut(s) 446, 455, 956, 1121, 1238
AluI AGCT 5 cut(s) 446, 455, 956, 1121, 1238
AlwI GGATC 2 cut(s) 926, 1084
AlwNI CAGNNNCTG 2 cut(s) 70, 650
AoxI GGCC 3 cut(s) 209, 318, 652
ApeKI GCWGC 4 cut(s) 776, 918, 1127, 1436
ApoI RAATTY 4 cut(s) 19, 117, 804, 838
AseI ATTAAT 1 cut(s) 960
Asp700I GAANNNNTTC 2 cut(s) 19, 140
AspLEI GCGC 3 cut(s) 40, 104, 167
AspS9I GGNCC 1 cut(s) 73
AsuC2I CCSGG 1 cut(s) 980
AsuHPI GGTGA 5 cut(s) 55, 434, 484, 852, 1497
AvaII GGWCC 1 cut(s) 73
BaeI ACNNNNGTAYC 2 cut(s) 702, 735
BalI TGGCCA 1 cut(s) 654
BbrPI CACGTG 1 cut(s) 506
BbvI GCAGC 4 cut(s) 788, 905, 1114, 1448
BccI CCATC 5 cut(s) 40, 220, 980, 1271, 1275
BceAI ACGGC 1 cut(s) 1424
BcgI CGANNNNNNTGC 2 cut(s) 920, 954
BciT130I CCWGG 1 cut(s) 651
BciVI GTATCC 2 cut(s) 432, 869
BclI TGATCA 3 cut(s) 969, 1327, 1524
BcnI CCSGG 1 cut(s) 980
BfaI CTAG 1 cut(s) 1019
BfoI RGCGCY 1 cut(s) 105
BfrI CTTAAG 1 cut(s) 311
BfuAI ACCTGC 1 cut(s) 1516
BfuI GTATCC 2 cut(s) 432, 869
BglII AGATCT 2 cut(s) 157, 670
BisI GCNGC 5 cut(s) 777, 919, 1032, 1128, 1437
BlsI GCNGC 5 cut(s) 778, 920, 1033, 1129, 1438
Bme1390I CCNGG 2 cut(s) 651, 980
Bme18I GGWCC 1 cut(s) 73
BmgT120I GGNCC 1 cut(s) 73
BmiI GGNNCC 4 cut(s) 706, 977, 1084, 1317
BmrFI CCNGG 2 cut(s) 651, 980
BmsI GCATC 4 cut(s) 57, 250, 1369, 1528
BpmI CTGGAG 1 cut(s) 654
BpuEI CTTGAG 1 cut(s) 516
BpuMI CCSGG 1 cut(s) 980
Bsa29I ATCGAT 2 cut(s) 300, 930
BsaAI YACGTR 2 cut(s) 506, 1194
BsaJI CCNNGG 4 cut(s) 276, 649, 942, 1206
BsaWI WCCGGW 1 cut(s) 862
BsaXI ACNNNNNCTCC 4 cut(s) 1158, 1188, 1425, 1455
Bsc4I CCNNNNNNNGG 5 cut(s) 345, 986, 1094, 1273, 1277
Bse118I RCCGGY 2 cut(s) 40, 1094
BseBI CCWGG 1 cut(s) 651
BseCI ATCGAT 2 cut(s) 300, 930
BseDI CCNNGG 4 cut(s) 276, 649, 942, 1206
BseGI GGATG 5 cut(s) 10, 1267, 1282, 1301, 1537
BseLI CCNNNNNNNGG 5 cut(s) 345, 986, 1094, 1273, 1277
BseMII CTCAG 1 cut(s) 402
BseRI GAGGAG 1 cut(s) 1245
BseXI GCAGC 4 cut(s) 788, 905, 1114, 1448
BsgI GTGCAG 2 cut(s) 486, 1494
Bsh1236I CGCG 3 cut(s) 167, 582, 1250
BshFI GGCC 3 cut(s) 211, 320, 654
BshVI ATCGAT 2 cut(s) 300, 930
BsiSI CCGG 5 cut(s) 41, 356, 863, 980, 1095
BslFI GGGAC 2 cut(s) 521, 1465
BslI CCNNNNNNNGG 5 cut(s) 345, 986, 1094, 1273, 1277
BsmFI GGGAC 2 cut(s) 521, 1465
BsmI GAATGC 3 cut(s) 526, 605, 779
BsnI GGCC 3 cut(s) 211, 320, 654
Bsp1407I TGTACA 1 cut(s) 1480
Bsp19I CCATGG 1 cut(s) 276
BspACI CCGC 5 cut(s) 50, 290, 1031, 1152, 1250
BspANI GGCC 3 cut(s) 211, 320, 654
BspCNI CTCAG 1 cut(s) 403
BspDI ATCGAT 2 cut(s) 300, 930
BspFNI CGCG 3 cut(s) 167, 582, 1250
BspLI GGNNCC 4 cut(s) 706, 977, 1084, 1317
BspMI ACCTGC 1 cut(s) 1516
BspPI GGATC 2 cut(s) 926, 1084
BspTI CTTAAG 1 cut(s) 311
BsrBI CCGCTC 1 cut(s) 290
BsrFI RCCGGY 2 cut(s) 40, 1094
BsrGI TGTACA 1 cut(s) 1480
BssAI RCCGGY 2 cut(s) 40, 1094
BssECI CCNNGG 4 cut(s) 276, 649, 942, 1206
BssT1I CCWWGG 3 cut(s) 276, 942, 1206
Bst2UI CCWGG 1 cut(s) 651
Bst4CI ACNGT 4 cut(s) 231, 664, 881, 1338
BstAFI CTTAAG 1 cut(s) 311
BstAPI GCANNNNNTGC 2 cut(s) 479, 1442
BstAUI TGTACA 1 cut(s) 1480
BstBAI YACGTR 2 cut(s) 506, 1194
BstC8I GCNNGC 2 cut(s) 656, 1053
BstDEI CTNAG 3 cut(s) 411, 484, 587
BstDSI CCRYGG 1 cut(s) 276
BstF5I GGATG 5 cut(s) 10, 1267, 1282, 1301, 1537
BstFNI CGCG 3 cut(s) 167, 582, 1250
BstH2I RGCGCY 1 cut(s) 105
BstHHI GCGC 3 cut(s) 40, 104, 167
BstMWI GCNNNNNNNGC 6 cut(s) 452, 479, 1031, 1127, 1136, 1442
BstNI CCWGG 1 cut(s) 651
BstNSI RCATGY 1 cut(s) 941
BstSCI CCNGG 2 cut(s) 649, 978
BstUI CGCG 3 cut(s) 167, 582, 1250
BstV1I GCAGC 4 cut(s) 788, 905, 1114, 1448
BstX2I RGATCY 3 cut(s) 157, 670, 1076
BstXI CCANNNNNNTGG 1 cut(s) 283
BstYI RGATCY 3 cut(s) 157, 670, 1076
Bsu15I ATCGAT 2 cut(s) 300, 930
BsuI GTATCC 2 cut(s) 432, 869
BsuRI GGCC 3 cut(s) 211, 320, 654
BsuTUI ATCGAT 2 cut(s) 300, 930
BtgI CCRYGG 1 cut(s) 276
BtgZI GCGATG 1 cut(s) 936
BtsCI GGATG 5 cut(s) 10, 1267, 1282, 1301, 1537
BtsI GCAGTG 1 cut(s) 263
BtsIMutI CAGTG 2 cut(s) 26, 263
BveI ACCTGC 1 cut(s) 1516
Cac8I GCNNGC 2 cut(s) 656, 1053
CaiI CAGNNNCTG 2 cut(s) 70, 650
CfoI GCGC 3 cut(s) 40, 104, 167
Cfr10I RCCGGY 2 cut(s) 40, 1094
Cfr13I GGNCC 1 cut(s) 73
ClaI ATCGAT 2 cut(s) 300, 930
Csp6I GTAC 3 cut(s) 621, 719, 1481
CspCI CAANNNNNGTGG 2 cut(s) 1288, 1323
CviAII CATG 8 cut(s) 216, 277, 722, 938, 967, 1114, 1398, 1551
CviQI GTAC 3 cut(s) 621, 719, 1481
DdeI CTNAG 3 cut(s) 411, 484, 587
DraIII CACNNNGTG 1 cut(s) 269
EaeI YGGCCR 2 cut(s) 318, 652
EciI GGCGGA 2 cut(s) 65, 1167
Eco130I CCWWGG 3 cut(s) 276, 942, 1206
Eco47I GGWCC 1 cut(s) 73
Eco72I CACGTG 1 cut(s) 506
EcoRII CCWGG 1 cut(s) 649
EcoT14I CCWWGG 3 cut(s) 276, 942, 1206
ErhI CCWWGG 3 cut(s) 276, 942, 1206
FaeI CATG 8 cut(s) 219, 280, 725, 941, 970, 1117, 1401, 1554
FaqI GGGAC 2 cut(s) 521, 1465
FatI CATG 8 cut(s) 215, 276, 721, 937, 966, 1113, 1397, 1550
FauNDI CATATG 1 cut(s) 1147
FbaI TGATCA 3 cut(s) 969, 1327, 1524
Fnu4HI GCNGC 5 cut(s) 777, 919, 1032, 1128, 1437
FokI GGATG 5 cut(s) 17, 1254, 1288, 1289, 1544
Fsp4HI GCNGC 5 cut(s) 777, 919, 1032, 1128, 1437
FspBI CTAG 1 cut(s) 1019
GlaI GCGC 3 cut(s) 39, 103, 166
GluI GCNGC 5 cut(s) 777, 919, 1032, 1128, 1437
GsuI CTGGAG 1 cut(s) 654
HaeII RGCGCY 1 cut(s) 105
HaeIII GGCC 3 cut(s) 211, 320, 654
HapII CCGG 5 cut(s) 41, 356, 863, 980, 1095
HhaI GCGC 3 cut(s) 40, 104, 167
Hin1II CATG 8 cut(s) 219, 280, 725, 941, 970, 1117, 1401, 1554
Hin6I GCGC 3 cut(s) 38, 102, 165
HinP1I GCGC 3 cut(s) 38, 102, 165
HincII GTYRAC 1 cut(s) 1012
HindII GTYRAC 1 cut(s) 1012
HinfI GANTC 3 cut(s) 53, 497, 1407
HpaII CCGG 5 cut(s) 41, 356, 863, 980, 1095
HphI GGTGA 5 cut(s) 55, 434, 484, 852, 1497
Hpy166II GTNNAC 3 cut(s) 227, 1012, 1505
Hpy188I TCNGA 4 cut(s) 66, 412, 695, 1524
Hpy188III TCNNGA 4 cut(s) 133, 973, 1271, 1450
Hpy8I GTNNAC 3 cut(s) 227, 1012, 1505
Hpy99I CGWCG 1 cut(s) 245
HpyAV CCTTC 4 cut(s) 79, 215, 559, 1037
HpyCH4III ACNGT 4 cut(s) 231, 664, 881, 1338
HpyCH4IV ACGT 3 cut(s) 505, 831, 1193
HpyF10VI GCNNNNNNNGC 6 cut(s) 452, 479, 1031, 1127, 1136, 1442
HpyF3I CTNAG 3 cut(s) 411, 484, 587
HpySE526I ACGT 3 cut(s) 505, 831, 1193
Hsp92II CATG 8 cut(s) 219, 280, 725, 941, 970, 1117, 1401, 1554
HspAI GCGC 3 cut(s) 38, 102, 165
Ksp22I TGATCA 3 cut(s) 969, 1327, 1524
LmnI GCTCC 8 cut(s) 287, 452, 704, 953, 1022, 1118, 1166, 1433
Lsp1109I GCAGC 4 cut(s) 788, 905, 1114, 1448
LweI GCATC 4 cut(s) 57, 250, 1369, 1528
MaeI CTAG 1 cut(s) 1019
MaeII ACGT 3 cut(s) 505, 831, 1193
MaeIII GTNAC 3 cut(s) 199, 381, 746
MbiI CCGCTC 1 cut(s) 290
MboII GAAGA 4 cut(s) 27, 148, 361, 1369
MfeI CAATTG 3 cut(s) 754, 1026, 1035
MflI RGATCY 3 cut(s) 157, 670, 1076
MlsI TGGCCA 1 cut(s) 654
MluI ACGCGT 1 cut(s) 580
MluNI TGGCCA 1 cut(s) 654
MlyI GAGTC 2 cut(s) 491, 1401
MmeI TCCRAC 2 cut(s) 1207, 1288
Mox20I TGGCCA 1 cut(s) 654
MroXI GAANNNNTTC 2 cut(s) 19, 140
MscI TGGCCA 1 cut(s) 654
MseI TTAA 5 cut(s) 174, 312, 465, 960, 995
MslI CAYNNNNRTG 4 cut(s) 31, 390, 1396, 1426
Msp20I TGGCCA 1 cut(s) 654
MspCI CTTAAG 1 cut(s) 311
MspI CCGG 5 cut(s) 41, 356, 863, 980, 1095
MspR9I CCNGG 2 cut(s) 651, 980
MunI CAATTG 3 cut(s) 754, 1026, 1035
Mva1269I GAATGC 3 cut(s) 526, 605, 779
MvaI CCWGG 1 cut(s) 651
MvnI CGCG 3 cut(s) 167, 582, 1250
MwoI GCNNNNNNNGC 6 cut(s) 452, 479, 1031, 1127, 1136, 1442
NciI CCSGG 1 cut(s) 980
NcoI CCATGG 1 cut(s) 276
NdeI CATATG 1 cut(s) 1147
NlaIII CATG 8 cut(s) 219, 280, 725, 941, 970, 1117, 1401, 1554
NlaIV GGNNCC 4 cut(s) 706, 977, 1084, 1317
NmeAIII GCCGAG 1 cut(s) 141
NmuCI GTSAC 3 cut(s) 199, 381, 746
NspI RCATGY 1 cut(s) 941
OliI CACNNNNGTG 1 cut(s) 1426
PaqCI CACCTGC 1 cut(s) 1516
PcsI WCGNNNNNNNCGW 1 cut(s) 1302
PctI GAATGC 3 cut(s) 526, 605, 779
PdmI GAANNNNTTC 2 cut(s) 19, 140
PfeI GAWTC 1 cut(s) 53
PflMI CCANNNNNTGG 1 cut(s) 1277
PkrI GCNGC 5 cut(s) 778, 920, 1033, 1129, 1438
PleI GAGTC 2 cut(s) 491, 1401
PmaCI CACGTG 1 cut(s) 506
PmlI CACGTG 1 cut(s) 506
PpsI GAGTC 2 cut(s) 491, 1401
Ppu21I YACGTR 2 cut(s) 506, 1194
PshBI ATTAAT 1 cut(s) 960
Psp1406I AACGTT 1 cut(s) 831
Psp6I CCWGG 1 cut(s) 649
PspCI CACGTG 1 cut(s) 506
PspGI CCWGG 1 cut(s) 649
PspN4I GGNNCC 4 cut(s) 706, 977, 1084, 1317
PspPI GGNCC 1 cut(s) 73
PstNI CAGNNNCTG 2 cut(s) 70, 650
PsuI RGATCY 3 cut(s) 157, 670, 1076
RsaI GTAC 3 cut(s) 622, 720, 1482
RsaNI GTAC 3 cut(s) 621, 719, 1481
RseI CAYNNNNRTG 4 cut(s) 31, 390, 1396, 1426
SaqAI TTAA 5 cut(s) 174, 312, 465, 960, 995
SatI GCNGC 5 cut(s) 777, 919, 1032, 1128, 1437
Sau96I GGNCC 1 cut(s) 73
SchI GAGTC 2 cut(s) 491, 1401
ScrFI CCNGG 2 cut(s) 651, 980
SfaNI GCATC 4 cut(s) 57, 250, 1369, 1528
SgrAI CRCCGGYG 1 cut(s) 40
SinI GGWCC 1 cut(s) 73
SmiMI CAYNNNNRTG 4 cut(s) 31, 390, 1396, 1426
SmlI CTYRAG 2 cut(s) 311, 531
SmoI CTYRAG 2 cut(s) 311, 531
SsiI CCGC 5 cut(s) 50, 290, 1031, 1152, 1250
SspMI CTAG 1 cut(s) 1019
StyD4I CCNGG 2 cut(s) 649, 978
StyI CCWWGG 3 cut(s) 276, 942, 1206
TaaI ACNGT 4 cut(s) 231, 664, 881, 1338
TaiI ACGT 3 cut(s) 508, 834, 1196
TaqI TCGA 4 cut(s) 13, 23, 300, 930
TatI WGTACW 2 cut(s) 718, 1480
TauI GCSGC 1 cut(s) 1034
TfiI GAWTC 1 cut(s) 53
Tru1I TTAA 5 cut(s) 174, 312, 465, 960, 995
Tru9I TTAA 5 cut(s) 174, 312, 465, 960, 995
TscAI CASTG 2 cut(s) 33, 270
TseFI GTSAC 3 cut(s) 199, 381, 746
TseI GCWGC 4 cut(s) 776, 918, 1127, 1436
Tsp45I GTSAC 3 cut(s) 199, 381, 746
TspDTI ATGAA 1 cut(s) 939
TspGWI ACGGA 2 cut(s) 393, 1294
TspRI CASTG 2 cut(s) 33, 270
Van91I CCANNNNNTGG 1 cut(s) 1277
Vha464I CTTAAG 1 cut(s) 311
VpaK11BI GGWCC 1 cut(s) 73
VspI ATTAAT 1 cut(s) 960
XapI RAATTY 4 cut(s) 19, 117, 804, 838
XceI RCATGY 1 cut(s) 941
XcmI CCANNNNNNNNNTGG 1 cut(s) 1274
XmnI GAANNNNTTC 2 cut(s) 19, 140
XspI CTAG 1 cut(s) 1019
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.