Bifunctional 3-dehydroquinate dehydratase shikimate dehydrogenase, chloroplastic-like
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_6g04670 FvH4_6g04670 FvH4_6g04670 |
| malus_domestica | MD04G1213800.v1.1 MD12G1228800.v1.1 |
| prunus_persica | Prupe.6G334000_v2.0.a1 Prupe.6G334000_v2.0.a1 |
| pyrus_communis | pycom04g18930 pycom12g21340 |
| rosa_chinensis | RchiOBHm_Chr3g0453141 |
| rosa_laevigata | RLG00000025534 |
| rosa_multiflora | Rmu_sc0007132.1_g000006 Rmu_sc0013481.1_g000002 |
| rosa_roxburghii | Rroxscaffold_6G00430200 |
| rosa_rugosa | Rorug02G0646800 |
| rosa_samantha | Rh3AG049400 Rh3BG050600 Rh3CG050800 Rh3DG051400 |
| rosa_wichuraiana | Rw3G003790 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1516 |
| Acc36I | ACCTGC | 1 cut(s) | 1516 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1277 |
| AccBSI | CCGCTC | 1 cut(s) | 290 |
| AccII | CGCG | 3 cut(s) | 167, 582, 1250 |
| AciI | CCGC | 5 cut(s) | 50, 290, 1031, 1152, 1250 |
| AclI | AACGTT | 1 cut(s) | 831 |
| AclWI | GGATC | 2 cut(s) | 926, 1084 |
| AcoI | YGGCCR | 2 cut(s) | 318, 652 |
| AcsI | RAATTY | 4 cut(s) | 19, 117, 804, 838 |
| AcvI | CACGTG | 1 cut(s) | 506 |
| AdeI | CACNNNGTG | 1 cut(s) | 269 |
| AfaI | GTAC | 3 cut(s) | 622, 720, 1482 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 345, 986, 1094, 1273, 1277 |
| AflII | CTTAAG | 1 cut(s) | 311 |
| AflIII | ACRYGT | 2 cut(s) | 505, 580 |
| AjnI | CCWGG | 1 cut(s) | 649 |
| AleI | CACNNNNGTG | 1 cut(s) | 1426 |
| AluBI | AGCT | 5 cut(s) | 446, 455, 956, 1121, 1238 |
| AluI | AGCT | 5 cut(s) | 446, 455, 956, 1121, 1238 |
| AlwI | GGATC | 2 cut(s) | 926, 1084 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 70, 650 |
| AoxI | GGCC | 3 cut(s) | 209, 318, 652 |
| ApeKI | GCWGC | 4 cut(s) | 776, 918, 1127, 1436 |
| ApoI | RAATTY | 4 cut(s) | 19, 117, 804, 838 |
| AseI | ATTAAT | 1 cut(s) | 960 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 19, 140 |
| AspLEI | GCGC | 3 cut(s) | 40, 104, 167 |
| AspS9I | GGNCC | 1 cut(s) | 73 |
| AsuC2I | CCSGG | 1 cut(s) | 980 |
| AsuHPI | GGTGA | 5 cut(s) | 55, 434, 484, 852, 1497 |
| AvaII | GGWCC | 1 cut(s) | 73 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 702, 735 |
| BalI | TGGCCA | 1 cut(s) | 654 |
| BbrPI | CACGTG | 1 cut(s) | 506 |
| BbvI | GCAGC | 4 cut(s) | 788, 905, 1114, 1448 |
| BccI | CCATC | 5 cut(s) | 40, 220, 980, 1271, 1275 |
| BceAI | ACGGC | 1 cut(s) | 1424 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 920, 954 |
| BciT130I | CCWGG | 1 cut(s) | 651 |
| BciVI | GTATCC | 2 cut(s) | 432, 869 |
| BclI | TGATCA | 3 cut(s) | 969, 1327, 1524 |
| BcnI | CCSGG | 1 cut(s) | 980 |
| BfaI | CTAG | 1 cut(s) | 1019 |
| BfoI | RGCGCY | 1 cut(s) | 105 |
| BfrI | CTTAAG | 1 cut(s) | 311 |
| BfuAI | ACCTGC | 1 cut(s) | 1516 |
| BfuI | GTATCC | 2 cut(s) | 432, 869 |
| BglII | AGATCT | 2 cut(s) | 157, 670 |
| BisI | GCNGC | 5 cut(s) | 777, 919, 1032, 1128, 1437 |
| BlsI | GCNGC | 5 cut(s) | 778, 920, 1033, 1129, 1438 |
| Bme1390I | CCNGG | 2 cut(s) | 651, 980 |
| Bme18I | GGWCC | 1 cut(s) | 73 |
| BmgT120I | GGNCC | 1 cut(s) | 73 |
| BmiI | GGNNCC | 4 cut(s) | 706, 977, 1084, 1317 |
| BmrFI | CCNGG | 2 cut(s) | 651, 980 |
| BmsI | GCATC | 4 cut(s) | 57, 250, 1369, 1528 |
| BpmI | CTGGAG | 1 cut(s) | 654 |
| BpuEI | CTTGAG | 1 cut(s) | 516 |
| BpuMI | CCSGG | 1 cut(s) | 980 |
| Bsa29I | ATCGAT | 2 cut(s) | 300, 930 |
| BsaAI | YACGTR | 2 cut(s) | 506, 1194 |
| BsaJI | CCNNGG | 4 cut(s) | 276, 649, 942, 1206 |
| BsaWI | WCCGGW | 1 cut(s) | 862 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1158, 1188, 1425, 1455 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 345, 986, 1094, 1273, 1277 |
| Bse118I | RCCGGY | 2 cut(s) | 40, 1094 |
| BseBI | CCWGG | 1 cut(s) | 651 |
| BseCI | ATCGAT | 2 cut(s) | 300, 930 |
| BseDI | CCNNGG | 4 cut(s) | 276, 649, 942, 1206 |
| BseGI | GGATG | 5 cut(s) | 10, 1267, 1282, 1301, 1537 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 345, 986, 1094, 1273, 1277 |
| BseMII | CTCAG | 1 cut(s) | 402 |
| BseRI | GAGGAG | 1 cut(s) | 1245 |
| BseXI | GCAGC | 4 cut(s) | 788, 905, 1114, 1448 |
| BsgI | GTGCAG | 2 cut(s) | 486, 1494 |
| Bsh1236I | CGCG | 3 cut(s) | 167, 582, 1250 |
| BshFI | GGCC | 3 cut(s) | 211, 320, 654 |
| BshVI | ATCGAT | 2 cut(s) | 300, 930 |
| BsiSI | CCGG | 5 cut(s) | 41, 356, 863, 980, 1095 |
| BslFI | GGGAC | 2 cut(s) | 521, 1465 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 345, 986, 1094, 1273, 1277 |
| BsmFI | GGGAC | 2 cut(s) | 521, 1465 |
| BsmI | GAATGC | 3 cut(s) | 526, 605, 779 |
| BsnI | GGCC | 3 cut(s) | 211, 320, 654 |
| Bsp1407I | TGTACA | 1 cut(s) | 1480 |
| Bsp19I | CCATGG | 1 cut(s) | 276 |
| BspACI | CCGC | 5 cut(s) | 50, 290, 1031, 1152, 1250 |
| BspANI | GGCC | 3 cut(s) | 211, 320, 654 |
| BspCNI | CTCAG | 1 cut(s) | 403 |
| BspDI | ATCGAT | 2 cut(s) | 300, 930 |
| BspFNI | CGCG | 3 cut(s) | 167, 582, 1250 |
| BspLI | GGNNCC | 4 cut(s) | 706, 977, 1084, 1317 |
| BspMI | ACCTGC | 1 cut(s) | 1516 |
| BspPI | GGATC | 2 cut(s) | 926, 1084 |
| BspTI | CTTAAG | 1 cut(s) | 311 |
| BsrBI | CCGCTC | 1 cut(s) | 290 |
| BsrFI | RCCGGY | 2 cut(s) | 40, 1094 |
| BsrGI | TGTACA | 1 cut(s) | 1480 |
| BssAI | RCCGGY | 2 cut(s) | 40, 1094 |
| BssECI | CCNNGG | 4 cut(s) | 276, 649, 942, 1206 |
| BssT1I | CCWWGG | 3 cut(s) | 276, 942, 1206 |
| Bst2UI | CCWGG | 1 cut(s) | 651 |
| Bst4CI | ACNGT | 4 cut(s) | 231, 664, 881, 1338 |
| BstAFI | CTTAAG | 1 cut(s) | 311 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 479, 1442 |
| BstAUI | TGTACA | 1 cut(s) | 1480 |
| BstBAI | YACGTR | 2 cut(s) | 506, 1194 |
| BstC8I | GCNNGC | 2 cut(s) | 656, 1053 |
| BstDEI | CTNAG | 3 cut(s) | 411, 484, 587 |
| BstDSI | CCRYGG | 1 cut(s) | 276 |
| BstF5I | GGATG | 5 cut(s) | 10, 1267, 1282, 1301, 1537 |
| BstFNI | CGCG | 3 cut(s) | 167, 582, 1250 |
| BstH2I | RGCGCY | 1 cut(s) | 105 |
| BstHHI | GCGC | 3 cut(s) | 40, 104, 167 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 452, 479, 1031, 1127, 1136, 1442 |
| BstNI | CCWGG | 1 cut(s) | 651 |
| BstNSI | RCATGY | 1 cut(s) | 941 |
| BstSCI | CCNGG | 2 cut(s) | 649, 978 |
| BstUI | CGCG | 3 cut(s) | 167, 582, 1250 |
| BstV1I | GCAGC | 4 cut(s) | 788, 905, 1114, 1448 |
| BstX2I | RGATCY | 3 cut(s) | 157, 670, 1076 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 283 |
| BstYI | RGATCY | 3 cut(s) | 157, 670, 1076 |
| Bsu15I | ATCGAT | 2 cut(s) | 300, 930 |
| BsuI | GTATCC | 2 cut(s) | 432, 869 |
| BsuRI | GGCC | 3 cut(s) | 211, 320, 654 |
| BsuTUI | ATCGAT | 2 cut(s) | 300, 930 |
| BtgI | CCRYGG | 1 cut(s) | 276 |
| BtgZI | GCGATG | 1 cut(s) | 936 |
| BtsCI | GGATG | 5 cut(s) | 10, 1267, 1282, 1301, 1537 |
| BtsI | GCAGTG | 1 cut(s) | 263 |
| BtsIMutI | CAGTG | 2 cut(s) | 26, 263 |
| BveI | ACCTGC | 1 cut(s) | 1516 |
| Cac8I | GCNNGC | 2 cut(s) | 656, 1053 |
| CaiI | CAGNNNCTG | 2 cut(s) | 70, 650 |
| CfoI | GCGC | 3 cut(s) | 40, 104, 167 |
| Cfr10I | RCCGGY | 2 cut(s) | 40, 1094 |
| Cfr13I | GGNCC | 1 cut(s) | 73 |
| ClaI | ATCGAT | 2 cut(s) | 300, 930 |
| Csp6I | GTAC | 3 cut(s) | 621, 719, 1481 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1288, 1323 |
| CviAII | CATG | 8 cut(s) | 216, 277, 722, 938, 967, 1114, 1398, 1551 |
| CviQI | GTAC | 3 cut(s) | 621, 719, 1481 |
| DdeI | CTNAG | 3 cut(s) | 411, 484, 587 |
| DraIII | CACNNNGTG | 1 cut(s) | 269 |
| EaeI | YGGCCR | 2 cut(s) | 318, 652 |
| EciI | GGCGGA | 2 cut(s) | 65, 1167 |
| Eco130I | CCWWGG | 3 cut(s) | 276, 942, 1206 |
| Eco47I | GGWCC | 1 cut(s) | 73 |
| Eco72I | CACGTG | 1 cut(s) | 506 |
| EcoRII | CCWGG | 1 cut(s) | 649 |
| EcoT14I | CCWWGG | 3 cut(s) | 276, 942, 1206 |
| ErhI | CCWWGG | 3 cut(s) | 276, 942, 1206 |
| FaeI | CATG | 8 cut(s) | 219, 280, 725, 941, 970, 1117, 1401, 1554 |
| FaqI | GGGAC | 2 cut(s) | 521, 1465 |
| FatI | CATG | 8 cut(s) | 215, 276, 721, 937, 966, 1113, 1397, 1550 |
| FauNDI | CATATG | 1 cut(s) | 1147 |
| FbaI | TGATCA | 3 cut(s) | 969, 1327, 1524 |
| Fnu4HI | GCNGC | 5 cut(s) | 777, 919, 1032, 1128, 1437 |
| FokI | GGATG | 5 cut(s) | 17, 1254, 1288, 1289, 1544 |
| Fsp4HI | GCNGC | 5 cut(s) | 777, 919, 1032, 1128, 1437 |
| FspBI | CTAG | 1 cut(s) | 1019 |
| GlaI | GCGC | 3 cut(s) | 39, 103, 166 |
| GluI | GCNGC | 5 cut(s) | 777, 919, 1032, 1128, 1437 |
| GsuI | CTGGAG | 1 cut(s) | 654 |
| HaeII | RGCGCY | 1 cut(s) | 105 |
| HaeIII | GGCC | 3 cut(s) | 211, 320, 654 |
| HapII | CCGG | 5 cut(s) | 41, 356, 863, 980, 1095 |
| HhaI | GCGC | 3 cut(s) | 40, 104, 167 |
| Hin1II | CATG | 8 cut(s) | 219, 280, 725, 941, 970, 1117, 1401, 1554 |
| Hin6I | GCGC | 3 cut(s) | 38, 102, 165 |
| HinP1I | GCGC | 3 cut(s) | 38, 102, 165 |
| HincII | GTYRAC | 1 cut(s) | 1012 |
| HindII | GTYRAC | 1 cut(s) | 1012 |
| HinfI | GANTC | 3 cut(s) | 53, 497, 1407 |
| HpaII | CCGG | 5 cut(s) | 41, 356, 863, 980, 1095 |
| HphI | GGTGA | 5 cut(s) | 55, 434, 484, 852, 1497 |
| Hpy166II | GTNNAC | 3 cut(s) | 227, 1012, 1505 |
| Hpy188I | TCNGA | 4 cut(s) | 66, 412, 695, 1524 |
| Hpy188III | TCNNGA | 4 cut(s) | 133, 973, 1271, 1450 |
| Hpy8I | GTNNAC | 3 cut(s) | 227, 1012, 1505 |
| Hpy99I | CGWCG | 1 cut(s) | 245 |
| HpyAV | CCTTC | 4 cut(s) | 79, 215, 559, 1037 |
| HpyCH4III | ACNGT | 4 cut(s) | 231, 664, 881, 1338 |
| HpyCH4IV | ACGT | 3 cut(s) | 505, 831, 1193 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 452, 479, 1031, 1127, 1136, 1442 |
| HpyF3I | CTNAG | 3 cut(s) | 411, 484, 587 |
| HpySE526I | ACGT | 3 cut(s) | 505, 831, 1193 |
| Hsp92II | CATG | 8 cut(s) | 219, 280, 725, 941, 970, 1117, 1401, 1554 |
| HspAI | GCGC | 3 cut(s) | 38, 102, 165 |
| Ksp22I | TGATCA | 3 cut(s) | 969, 1327, 1524 |
| LmnI | GCTCC | 8 cut(s) | 287, 452, 704, 953, 1022, 1118, 1166, 1433 |
| Lsp1109I | GCAGC | 4 cut(s) | 788, 905, 1114, 1448 |
| LweI | GCATC | 4 cut(s) | 57, 250, 1369, 1528 |
| MaeI | CTAG | 1 cut(s) | 1019 |
| MaeII | ACGT | 3 cut(s) | 505, 831, 1193 |
| MaeIII | GTNAC | 3 cut(s) | 199, 381, 746 |
| MbiI | CCGCTC | 1 cut(s) | 290 |
| MboII | GAAGA | 4 cut(s) | 27, 148, 361, 1369 |
| MfeI | CAATTG | 3 cut(s) | 754, 1026, 1035 |
| MflI | RGATCY | 3 cut(s) | 157, 670, 1076 |
| MlsI | TGGCCA | 1 cut(s) | 654 |
| MluI | ACGCGT | 1 cut(s) | 580 |
| MluNI | TGGCCA | 1 cut(s) | 654 |
| MlyI | GAGTC | 2 cut(s) | 491, 1401 |
| MmeI | TCCRAC | 2 cut(s) | 1207, 1288 |
| Mox20I | TGGCCA | 1 cut(s) | 654 |
| MroXI | GAANNNNTTC | 2 cut(s) | 19, 140 |
| MscI | TGGCCA | 1 cut(s) | 654 |
| MseI | TTAA | 5 cut(s) | 174, 312, 465, 960, 995 |
| MslI | CAYNNNNRTG | 4 cut(s) | 31, 390, 1396, 1426 |
| Msp20I | TGGCCA | 1 cut(s) | 654 |
| MspCI | CTTAAG | 1 cut(s) | 311 |
| MspI | CCGG | 5 cut(s) | 41, 356, 863, 980, 1095 |
| MspR9I | CCNGG | 2 cut(s) | 651, 980 |
| MunI | CAATTG | 3 cut(s) | 754, 1026, 1035 |
| Mva1269I | GAATGC | 3 cut(s) | 526, 605, 779 |
| MvaI | CCWGG | 1 cut(s) | 651 |
| MvnI | CGCG | 3 cut(s) | 167, 582, 1250 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 452, 479, 1031, 1127, 1136, 1442 |
| NciI | CCSGG | 1 cut(s) | 980 |
| NcoI | CCATGG | 1 cut(s) | 276 |
| NdeI | CATATG | 1 cut(s) | 1147 |
| NlaIII | CATG | 8 cut(s) | 219, 280, 725, 941, 970, 1117, 1401, 1554 |
| NlaIV | GGNNCC | 4 cut(s) | 706, 977, 1084, 1317 |
| NmeAIII | GCCGAG | 1 cut(s) | 141 |
| NmuCI | GTSAC | 3 cut(s) | 199, 381, 746 |
| NspI | RCATGY | 1 cut(s) | 941 |
| OliI | CACNNNNGTG | 1 cut(s) | 1426 |
| PaqCI | CACCTGC | 1 cut(s) | 1516 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1302 |
| PctI | GAATGC | 3 cut(s) | 526, 605, 779 |
| PdmI | GAANNNNTTC | 2 cut(s) | 19, 140 |
| PfeI | GAWTC | 1 cut(s) | 53 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1277 |
| PkrI | GCNGC | 5 cut(s) | 778, 920, 1033, 1129, 1438 |
| PleI | GAGTC | 2 cut(s) | 491, 1401 |
| PmaCI | CACGTG | 1 cut(s) | 506 |
| PmlI | CACGTG | 1 cut(s) | 506 |
| PpsI | GAGTC | 2 cut(s) | 491, 1401 |
| Ppu21I | YACGTR | 2 cut(s) | 506, 1194 |
| PshBI | ATTAAT | 1 cut(s) | 960 |
| Psp1406I | AACGTT | 1 cut(s) | 831 |
| Psp6I | CCWGG | 1 cut(s) | 649 |
| PspCI | CACGTG | 1 cut(s) | 506 |
| PspGI | CCWGG | 1 cut(s) | 649 |
| PspN4I | GGNNCC | 4 cut(s) | 706, 977, 1084, 1317 |
| PspPI | GGNCC | 1 cut(s) | 73 |
| PstNI | CAGNNNCTG | 2 cut(s) | 70, 650 |
| PsuI | RGATCY | 3 cut(s) | 157, 670, 1076 |
| RsaI | GTAC | 3 cut(s) | 622, 720, 1482 |
| RsaNI | GTAC | 3 cut(s) | 621, 719, 1481 |
| RseI | CAYNNNNRTG | 4 cut(s) | 31, 390, 1396, 1426 |
| SaqAI | TTAA | 5 cut(s) | 174, 312, 465, 960, 995 |
| SatI | GCNGC | 5 cut(s) | 777, 919, 1032, 1128, 1437 |
| Sau96I | GGNCC | 1 cut(s) | 73 |
| SchI | GAGTC | 2 cut(s) | 491, 1401 |
| ScrFI | CCNGG | 2 cut(s) | 651, 980 |
| SfaNI | GCATC | 4 cut(s) | 57, 250, 1369, 1528 |
| SgrAI | CRCCGGYG | 1 cut(s) | 40 |
| SinI | GGWCC | 1 cut(s) | 73 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 31, 390, 1396, 1426 |
| SmlI | CTYRAG | 2 cut(s) | 311, 531 |
| SmoI | CTYRAG | 2 cut(s) | 311, 531 |
| SsiI | CCGC | 5 cut(s) | 50, 290, 1031, 1152, 1250 |
| SspMI | CTAG | 1 cut(s) | 1019 |
| StyD4I | CCNGG | 2 cut(s) | 649, 978 |
| StyI | CCWWGG | 3 cut(s) | 276, 942, 1206 |
| TaaI | ACNGT | 4 cut(s) | 231, 664, 881, 1338 |
| TaiI | ACGT | 3 cut(s) | 508, 834, 1196 |
| TaqI | TCGA | 4 cut(s) | 13, 23, 300, 930 |
| TatI | WGTACW | 2 cut(s) | 718, 1480 |
| TauI | GCSGC | 1 cut(s) | 1034 |
| TfiI | GAWTC | 1 cut(s) | 53 |
| Tru1I | TTAA | 5 cut(s) | 174, 312, 465, 960, 995 |
| Tru9I | TTAA | 5 cut(s) | 174, 312, 465, 960, 995 |
| TscAI | CASTG | 2 cut(s) | 33, 270 |
| TseFI | GTSAC | 3 cut(s) | 199, 381, 746 |
| TseI | GCWGC | 4 cut(s) | 776, 918, 1127, 1436 |
| Tsp45I | GTSAC | 3 cut(s) | 199, 381, 746 |
| TspDTI | ATGAA | 1 cut(s) | 939 |
| TspGWI | ACGGA | 2 cut(s) | 393, 1294 |
| TspRI | CASTG | 2 cut(s) | 33, 270 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1277 |
| Vha464I | CTTAAG | 1 cut(s) | 311 |
| VpaK11BI | GGWCC | 1 cut(s) | 73 |
| VspI | ATTAAT | 1 cut(s) | 960 |
| XapI | RAATTY | 4 cut(s) | 19, 117, 804, 838 |
| XceI | RCATGY | 1 cut(s) | 941 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1274 |
| XmnI | GAANNNNTTC | 2 cut(s) | 19, 140 |
| XspI | CTAG | 1 cut(s) | 1019 |