Prupe.6G339600_v2.0.a1

EF-hand, calcium binding motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0016114
Physical Location & Seq
Forward (+)
29389347 .. 29390405
1059 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G339600.1

Sequence Viewer

Length: 417 bp
ATGAGCACGAGCGCTGTTGTTCTTCATGCCCTAAACAACTTGACCGTTACCAGATTCGTGGAAGACGCGACGTCGTTTGAGAAATGCAGCAAGGAATGTTTCGGTGCGCTTGATGCGGATGGCAAGGGAGGCTTATCGAGGGAAAAGCTCCGGGCAGGGTTTGGTAAGCTGTTGCCGGGCATAGGGTACGTGTCGCAGCCCAAGGACGAGATCAACGTTCTGCATGATGCGATATTTAAGAGATTTGATGCGGATCAAAATGGTGTGATTGATTGTCATGAGTTTAAGTCCCTGTTGATGGAGACCATGCTCGCCGTGGCACGAGGGATCGGAGGTTCGCCGGTTCTCGTGGCACTTGAGCATGGCAGCCTCCTTAGGAAGGCGGCTGAACATGAACAAGCTCGAACATCCAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EF-hand_1 EF-hand_5 EF-hand_6

Protein Analysis

139

Amino Acids

14.89

Weight (kDa)

6.19

Isoelectric Point (pI)

27.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016114)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54530
fragaria_vesca FvH4_6g03460
malus_domestica MD04G1220600.v1.1
prunus_persica Prupe.6G339600_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0451951
rosa_laevigata RLG00000025634
rosa_multiflora Rmu_sc0006510.1_g000001
rosa_roxburghii Rroxscaffold_164G00436160 Rroxscaffold_6G00429130
rosa_rugosa Rorug02G0637800
rosa_samantha Rh3AG039400 Rh3BG040800 Rh3CG039300 Rh3DG040000
rosa_wichuraiana Rw3G002960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 74
AccII CGCG 1 cut(s) 68
AciI CCGC 3 cut(s) 116, 251, 383
AclI AACGTT 1 cut(s) 216
AclWI GGATC 2 cut(s) 261, 335
AcyI GRCGYC 1 cut(s) 71
AfaI GTAC 1 cut(s) 188
AfeI AGCGCT 1 cut(s) 13
AfiI CCNNNNNNNGG 3 cut(s) 182, 298, 379
AflIII ACRYGT 1 cut(s) 189
AhdI GACNNNNNGTC 1 cut(s) 70
AloI GAACNNNNNNTCC 2 cut(s) 319, 351
AluBI AGCT 3 cut(s) 148, 169, 401
AluI AGCT 3 cut(s) 148, 169, 401
Alw21I GWGCWC 1 cut(s) 8
Alw26I GTCTC 1 cut(s) 296
AlwI GGATC 2 cut(s) 261, 335
Aor51HI AGCGCT 1 cut(s) 13
ApeKI GCWGC 3 cut(s) 87, 196, 366
AspLEI GCGC 2 cut(s) 14, 109
AsuC2I CCSGG 2 cut(s) 152, 177
AxyI CCTNAGG 1 cut(s) 374
BauI CACGAG 3 cut(s) 7, 321, 347
BbsI GAAGAC 1 cut(s) 69
Bbv12I GWGCWC 1 cut(s) 8
BbvI GCAGC 3 cut(s) 99, 208, 378
BccI CCATC 2 cut(s) 113, 292
BceAI ACGGC 1 cut(s) 299
BcnI CCSGG 2 cut(s) 152, 177
BcoDI GTCTC 1 cut(s) 296
BfaI CTAG 1 cut(s) 415
BfoI RGCGCY 1 cut(s) 15
BisI GCNGC 4 cut(s) 88, 197, 367, 384
BlsI GCNGC 4 cut(s) 89, 198, 368, 385
Bme1390I CCNGG 2 cut(s) 152, 177
BmeRI GACNNNNNGTC 1 cut(s) 70
BmrFI CCNGG 2 cut(s) 152, 177
BmsI GCATC 3 cut(s) 103, 217, 238
BpiI GAAGAC 1 cut(s) 69
BpuEI CTTGAG 1 cut(s) 377
BpuMI CCSGG 2 cut(s) 152, 177
BsaAI YACGTR 1 cut(s) 190
BsaBI GATNNNNATC 1 cut(s) 252
BsaHI GRCGYC 1 cut(s) 71
BsaI GGTCTC 1 cut(s) 296
BsaJI CCNNGG 2 cut(s) 201, 315
Bsc4I CCNNNNNNNGG 3 cut(s) 182, 298, 379
Bse118I RCCGGY 1 cut(s) 340
Bse21I CCTNAGG 1 cut(s) 374
Bse8I GATNNNNATC 1 cut(s) 252
BseDI CCNNGG 2 cut(s) 201, 315
BseGI GGATG 2 cut(s) 124, 407
BseJI GATNNNNATC 1 cut(s) 252
BseLI CCNNNNNNNGG 3 cut(s) 182, 298, 379
BseXI GCAGC 3 cut(s) 99, 208, 378
Bsh1236I CGCG 1 cut(s) 68
BsiHKAI GWGCWC 1 cut(s) 8
BsiSI CCGG 3 cut(s) 151, 176, 341
BslFI GGGAC 1 cut(s) 274
BslI CCNNNNNNNGG 3 cut(s) 182, 298, 379
BsmAI GTCTC 1 cut(s) 296
BsmFI GGGAC 1 cut(s) 274
Bso31I GGTCTC 1 cut(s) 296
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 3 cut(s) 210, 253, 327
BspACI CCGC 3 cut(s) 116, 251, 383
BspFNI CGCG 1 cut(s) 68
BspHI TCATGA 1 cut(s) 277
BspPI GGATC 2 cut(s) 261, 335
BspTNI GGTCTC 1 cut(s) 296
BsrFI RCCGGY 1 cut(s) 340
BssAI RCCGGY 1 cut(s) 340
BssECI CCNNGG 2 cut(s) 201, 315
BssMI GATC 3 cut(s) 210, 253, 327
BssNI GRCGYC 1 cut(s) 71
BssSI CACGAG 3 cut(s) 7, 321, 347
BssT1I CCWWGG 1 cut(s) 201
Bst2BI CACGAG 3 cut(s) 7, 321, 347
Bst4CI ACNGT 1 cut(s) 46
BstACI GRCGYC 1 cut(s) 71
BstBAI YACGTR 1 cut(s) 190
BstC8I GCNNGC 1 cut(s) 312
BstDEI CTNAG 1 cut(s) 374
BstDSI CCRYGG 1 cut(s) 315
BstENI CCTNNNNNAGG 1 cut(s) 377
BstF5I GGATG 2 cut(s) 124, 407
BstFNI CGCG 1 cut(s) 68
BstH2I RGCGCY 1 cut(s) 15
BstHHI GCGC 2 cut(s) 14, 109
BstKTI GATC 3 cut(s) 213, 256, 330
BstMAI GTCTC 1 cut(s) 296
BstMBI GATC 3 cut(s) 210, 253, 327
BstMWI GCNNNNNNNGC 2 cut(s) 113, 129
BstSCI CCNGG 2 cut(s) 150, 175
BstUI CGCG 1 cut(s) 68
BstV1I GCAGC 3 cut(s) 99, 208, 378
BstV2I GAAGAC 1 cut(s) 69
BstXI CCANNNNNNTGG 1 cut(s) 58
Bsu36I CCTNAGG 1 cut(s) 374
BtgI CCRYGG 1 cut(s) 315
BtsCI GGATG 2 cut(s) 124, 407
Cac8I GCNNGC 1 cut(s) 312
CciI TCATGA 1 cut(s) 277
CfoI GCGC 2 cut(s) 14, 109
Cfr10I RCCGGY 1 cut(s) 340
CseI GACGC 1 cut(s) 74
Csp6I GTAC 1 cut(s) 187
CviAII CATG 6 cut(s) 26, 224, 278, 307, 362, 392
CviJI RGCY 7 cut(s) 132, 148, 169, 199, 369, 386, 401
CviKI_1 RGCY 7 cut(s) 132, 148, 169, 199, 369, 386, 401
CviQI GTAC 1 cut(s) 187
DdeI CTNAG 1 cut(s) 374
DpnI GATC 3 cut(s) 212, 255, 329
DpnII GATC 3 cut(s) 210, 253, 327
DriI GACNNNNNGTC 1 cut(s) 70
Eam1105I GACNNNNNGTC 1 cut(s) 70
Eco130I CCWWGG 1 cut(s) 201
Eco31I GGTCTC 1 cut(s) 296
Eco47III AGCGCT 1 cut(s) 13
Eco81I CCTNAGG 1 cut(s) 374
EcoNI CCTNNNNNAGG 1 cut(s) 377
EcoT14I CCWWGG 1 cut(s) 201
ErhI CCWWGG 1 cut(s) 201
FaeI CATG 6 cut(s) 29, 227, 281, 310, 365, 395
FaiI YATR 7 cut(s) 27, 182, 225, 279, 308, 363, 393
FalI AAGNNNNNCTT 2 cut(s) 116, 148
FaqI GGGAC 1 cut(s) 274
FatI CATG 6 cut(s) 25, 223, 277, 306, 361, 391
Fnu4HI GCNGC 4 cut(s) 88, 197, 367, 384
FokI GGATG 2 cut(s) 131, 394
Fsp4HI GCNGC 4 cut(s) 88, 197, 367, 384
FspBI CTAG 1 cut(s) 415
GlaI GCGC 2 cut(s) 13, 108
GluI GCNGC 4 cut(s) 88, 197, 367, 384
HaeII RGCGCY 1 cut(s) 15
HapII CCGG 3 cut(s) 151, 176, 341
HgaI GACGC 1 cut(s) 74
HhaI GCGC 2 cut(s) 14, 109
Hin1I GRCGYC 1 cut(s) 71
Hin1II CATG 6 cut(s) 29, 227, 281, 310, 365, 395
Hin6I GCGC 2 cut(s) 12, 107
HinP1I GCGC 2 cut(s) 12, 107
HinfI GANTC 1 cut(s) 54
HpaII CCGG 3 cut(s) 151, 176, 341
Hpy188I TCNGA 1 cut(s) 332
Hpy188III TCNNGA 1 cut(s) 278
Hpy99I CGWCG 2 cut(s) 73, 76
HpyAV CCTTC 1 cut(s) 373
HpyCH4III ACNGT 1 cut(s) 46
HpyCH4IV ACGT 3 cut(s) 71, 189, 216
HpyCH4V TGCA 2 cut(s) 87, 223
HpyF10VI GCNNNNNNNGC 2 cut(s) 113, 129
HpyF3I CTNAG 1 cut(s) 374
HpySE526I ACGT 3 cut(s) 71, 189, 216
Hsp92I GRCGYC 1 cut(s) 71
Hsp92II CATG 6 cut(s) 29, 227, 281, 310, 365, 395
HspAI GCGC 2 cut(s) 12, 107
Kzo9I GATC 3 cut(s) 210, 253, 327
LmnI GCTCC 1 cut(s) 153
LpnPI CCDG 6 cut(s) 64, 141, 164, 189, 305, 354
Lsp1109I GCAGC 3 cut(s) 99, 208, 378
LweI GCATC 3 cut(s) 103, 217, 238
MaeI CTAG 1 cut(s) 415
MaeII ACGT 3 cut(s) 71, 189, 216
MaeIII GTNAC 1 cut(s) 46
MalI GATC 3 cut(s) 212, 255, 329
MboI GATC 3 cut(s) 210, 253, 327
MboII GAAGA 2 cut(s) 14, 74
MhlI GDGCHC 1 cut(s) 8
MnlI CCTC 5 cut(s) 122, 132, 317, 326, 380
MseI TTAA 2 cut(s) 237, 285
MspI CCGG 3 cut(s) 151, 176, 341
MspR9I CCNGG 2 cut(s) 152, 177
MvnI CGCG 1 cut(s) 68
MwoI GCNNNNNNNGC 2 cut(s) 113, 129
NciI CCSGG 2 cut(s) 152, 177
NdeII GATC 3 cut(s) 210, 253, 327
NlaIII CATG 6 cut(s) 29, 227, 281, 310, 365, 395
PagI TCATGA 1 cut(s) 277
PcsI WCGNNNNNNNCGW 1 cut(s) 213
PfeI GAWTC 1 cut(s) 54
PkrI GCNGC 4 cut(s) 89, 198, 368, 385
Ppu21I YACGTR 1 cut(s) 190
Psp1406I AACGTT 1 cut(s) 216
RsaI GTAC 1 cut(s) 188
RsaNI GTAC 1 cut(s) 187
SaqAI TTAA 2 cut(s) 237, 285
SatI GCNGC 4 cut(s) 88, 197, 367, 384
Sau3AI GATC 3 cut(s) 210, 253, 327
ScrFI CCNGG 2 cut(s) 152, 177
SduI GDGCHC 1 cut(s) 8
SetI ASST 7 cut(s) 74, 150, 171, 192, 219, 337, 403
SfaNI GCATC 3 cut(s) 103, 217, 238
SmlI CTYRAG 1 cut(s) 356
SmoI CTYRAG 1 cut(s) 356
SsiI CCGC 3 cut(s) 116, 251, 383
SspMI CTAG 1 cut(s) 415
StyD4I CCNGG 2 cut(s) 150, 175
StyI CCWWGG 1 cut(s) 201
TaaI ACNGT 1 cut(s) 46
TaiI ACGT 3 cut(s) 74, 192, 219
TaqI TCGA 2 cut(s) 137, 403
TauI GCSGC 1 cut(s) 386
TfiI GAWTC 1 cut(s) 54
Tru1I TTAA 2 cut(s) 237, 285
Tru9I TTAA 2 cut(s) 237, 285
TseI GCWGC 3 cut(s) 87, 196, 366
TspDTI ATGAA 2 cut(s) 14, 408
XagI CCTNNNNNAGG 1 cut(s) 377
XcmI CCANNNNNNNNNTGG 1 cut(s) 313
XspI CTAG 1 cut(s) 415
ZraI GACGTC 1 cut(s) 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.