EF-hand domain
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_6g03000 |
| malus_domestica | MD04G1223900.v1.1 |
| prunus_persica | Prupe.6G342600_v2.0.a1 Prupe.6G342600_v2.0.a1 |
| pyrus_communis | pycom04g19730 |
| rosa_chinensis | RchiOBHm_Chr3g0451781 |
| rosa_laevigata | RLG00000025650 |
| rosa_multiflora | Rmu_sc0006510.1_g000021 |
| rosa_roxburghii | Rroxscaffold_164G00436320 Rroxscaffold_6G00428970 |
| rosa_rugosa | Rorug02G0636000 Rorug02G0636100 Rorug02G0636200.1 |
| rosa_samantha | Rh3AG037700 Rh3CG037300 Rh3DG038100 |
| rosa_wichuraiana | Rw3G002810 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 2 cut(s) | 144, 309 |
| AcsI | RAATTY | 2 cut(s) | 243, 437 |
| AgsI | TTSAA | 2 cut(s) | 107, 286 |
| AluBI | AGCT | 3 cut(s) | 62, 160, 281 |
| AluI | AGCT | 3 cut(s) | 62, 160, 281 |
| AlwI | GGATC | 2 cut(s) | 144, 309 |
| ApeKI | GCWGC | 2 cut(s) | 93, 160 |
| ApoI | RAATTY | 2 cut(s) | 243, 437 |
| AseI | ATTAAT | 1 cut(s) | 348 |
| AspLEI | GCGC | 1 cut(s) | 124 |
| AsuHPI | GGTGA | 2 cut(s) | 312, 425 |
| BbsI | GAAGAC | 1 cut(s) | 62 |
| BbvI | GCAGC | 2 cut(s) | 80, 147 |
| BccI | CCATC | 6 cut(s) | 77, 83, 185, 302, 404, 410 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 167, 201 |
| BclI | TGATCA | 2 cut(s) | 3, 390 |
| BfmI | CTRYAG | 1 cut(s) | 161 |
| BisI | GCNGC | 2 cut(s) | 94, 161 |
| BlsI | GCNGC | 2 cut(s) | 95, 162 |
| BmiI | GGNNCC | 1 cut(s) | 202 |
| BmrI | ACTGGG | 1 cut(s) | 122 |
| BmsI | GCATC | 3 cut(s) | 175, 235, 253 |
| BmuI | ACTGGG | 1 cut(s) | 122 |
| BpiI | GAAGAC | 1 cut(s) | 62 |
| Bsa29I | ATCGAT | 1 cut(s) | 183 |
| BsaBI | GATNNNNATC | 1 cut(s) | 141 |
| Bse1I | ACTGG | 1 cut(s) | 117 |
| Bse8I | GATNNNNATC | 1 cut(s) | 141 |
| BseCI | ATCGAT | 1 cut(s) | 183 |
| BseGI | GGATG | 5 cut(s) | 88, 142, 268, 313, 415 |
| BseJI | GATNNNNATC | 1 cut(s) | 141 |
| BseMII | CTCAG | 1 cut(s) | 39 |
| BseNI | ACTGG | 1 cut(s) | 117 |
| BseXI | GCAGC | 2 cut(s) | 80, 147 |
| BshVI | ATCGAT | 1 cut(s) | 183 |
| BslFI | GGGAC | 1 cut(s) | 130 |
| BsmFI | GGGAC | 1 cut(s) | 130 |
| Bsp143I | GATC | 4 cut(s) | 3, 136, 301, 390 |
| BspCNI | CTCAG | 1 cut(s) | 40 |
| BspDI | ATCGAT | 1 cut(s) | 183 |
| BspLI | GGNNCC | 1 cut(s) | 202 |
| BspMAI | CTGCAG | 1 cut(s) | 165 |
| BspPI | GGATC | 2 cut(s) | 144, 309 |
| BspQI | GCTCTTC | 1 cut(s) | 150 |
| BsrI | ACTGG | 1 cut(s) | 117 |
| BssMI | GATC | 4 cut(s) | 3, 136, 301, 390 |
| Bst6I | CTCTTC | 2 cut(s) | 150, 369 |
| BstDEI | CTNAG | 2 cut(s) | 48, 421 |
| BstF5I | GGATG | 5 cut(s) | 88, 142, 268, 313, 415 |
| BstHHI | GCGC | 1 cut(s) | 124 |
| BstKTI | GATC | 4 cut(s) | 6, 139, 304, 393 |
| BstMBI | GATC | 4 cut(s) | 3, 136, 301, 390 |
| BstNSI | RCATGY | 1 cut(s) | 341 |
| BstSFI | CTRYAG | 1 cut(s) | 161 |
| BstV1I | GCAGC | 2 cut(s) | 80, 147 |
| BstV2I | GAAGAC | 1 cut(s) | 62 |
| Bsu15I | ATCGAT | 1 cut(s) | 183 |
| BsuTUI | ATCGAT | 1 cut(s) | 183 |
| BtsCI | GGATG | 5 cut(s) | 88, 142, 268, 313, 415 |
| CfoI | GCGC | 1 cut(s) | 124 |
| ClaI | ATCGAT | 1 cut(s) | 183 |
| CviAII | CATG | 4 cut(s) | 16, 79, 232, 338 |
| CviJI | RGCY | 6 cut(s) | 62, 93, 160, 281, 312, 420 |
| CviKI_1 | RGCY | 6 cut(s) | 62, 93, 160, 281, 312, 420 |
| DdeI | CTNAG | 2 cut(s) | 48, 421 |
| DpnI | GATC | 4 cut(s) | 5, 138, 303, 392 |
| DpnII | GATC | 4 cut(s) | 3, 136, 301, 390 |
| Eam1104I | CTCTTC | 2 cut(s) | 150, 369 |
| EarI | CTCTTC | 2 cut(s) | 150, 369 |
| FaeI | CATG | 4 cut(s) | 19, 82, 235, 341 |
| FaiI | YATR | 7 cut(s) | 17, 80, 170, 206, 233, 339, 432 |
| FaqI | GGGAC | 1 cut(s) | 130 |
| FatI | CATG | 4 cut(s) | 15, 78, 231, 337 |
| FbaI | TGATCA | 2 cut(s) | 3, 390 |
| Fnu4HI | GCNGC | 2 cut(s) | 94, 161 |
| FokI | GGATG | 5 cut(s) | 95, 129, 275, 320, 422 |
| Fsp4HI | GCNGC | 2 cut(s) | 94, 161 |
| GlaI | GCGC | 1 cut(s) | 123 |
| GluI | GCNGC | 2 cut(s) | 94, 161 |
| HhaI | GCGC | 1 cut(s) | 124 |
| Hin1II | CATG | 4 cut(s) | 19, 82, 235, 341 |
| Hin6I | GCGC | 1 cut(s) | 122 |
| HinP1I | GCGC | 1 cut(s) | 122 |
| HindIII | AAGCTT | 2 cut(s) | 60, 279 |
| HphI | GGTGA | 2 cut(s) | 312, 425 |
| Hpy188I | TCNGA | 1 cut(s) | 395 |
| Hpy188III | TCNNGA | 4 cut(s) | 56, 74, 248, 305 |
| HpyCH4V | TGCA | 4 cut(s) | 96, 163, 226, 266 |
| HpyF3I | CTNAG | 2 cut(s) | 48, 421 |
| Hsp92II | CATG | 4 cut(s) | 19, 82, 235, 341 |
| HspAI | GCGC | 1 cut(s) | 122 |
| Ksp22I | TGATCA | 2 cut(s) | 3, 390 |
| Kzo9I | GATC | 4 cut(s) | 3, 136, 301, 390 |
| LguI | GCTCTTC | 1 cut(s) | 150 |
| LpnPI | CCDG | 4 cut(s) | 41, 98, 233, 290 |
| Lsp1109I | GCAGC | 2 cut(s) | 80, 147 |
| LweI | GCATC | 3 cut(s) | 175, 235, 253 |
| MalI | GATC | 4 cut(s) | 5, 138, 303, 392 |
| MboI | GATC | 4 cut(s) | 3, 136, 301, 390 |
| MboII | GAAGA | 5 cut(s) | 62, 119, 164, 167, 386 |
| MluCI | AATT | 4 cut(s) | 243, 269, 427, 437 |
| MnlI | CCTC | 4 cut(s) | 16, 250, 327, 370 |
| MseI | TTAA | 2 cut(s) | 29, 348 |
| NdeII | GATC | 4 cut(s) | 3, 136, 301, 390 |
| NlaIII | CATG | 4 cut(s) | 19, 82, 235, 341 |
| NlaIV | GGNNCC | 1 cut(s) | 202 |
| NspI | RCATGY | 1 cut(s) | 341 |
| PciSI | GCTCTTC | 1 cut(s) | 150 |
| PkrI | GCNGC | 2 cut(s) | 95, 162 |
| PshBI | ATTAAT | 1 cut(s) | 348 |
| PspN4I | GGNNCC | 1 cut(s) | 202 |
| PstI | CTGCAG | 1 cut(s) | 165 |
| SapI | GCTCTTC | 1 cut(s) | 150 |
| SaqAI | TTAA | 2 cut(s) | 29, 348 |
| SatI | GCNGC | 2 cut(s) | 94, 161 |
| Sau3AI | GATC | 4 cut(s) | 3, 136, 301, 390 |
| SetI | ASST | 7 cut(s) | 27, 64, 162, 261, 283, 325, 381 |
| SfaNI | GCATC | 3 cut(s) | 175, 235, 253 |
| SfcI | CTRYAG | 1 cut(s) | 161 |
| Sse9I | AATT | 4 cut(s) | 243, 269, 427, 437 |
| TaqI | TCGA | 1 cut(s) | 183 |
| TasI | AATT | 4 cut(s) | 243, 269, 427, 437 |
| Tru1I | TTAA | 2 cut(s) | 29, 348 |
| Tru9I | TTAA | 2 cut(s) | 29, 348 |
| TseI | GCWGC | 2 cut(s) | 93, 160 |
| TspDTI | ATGAA | 1 cut(s) | 450 |
| TspGWI | ACGGA | 1 cut(s) | 164 |
| VspI | ATTAAT | 1 cut(s) | 348 |
| XapI | RAATTY | 2 cut(s) | 243, 437 |
| XceI | RCATGY | 1 cut(s) | 341 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 109 |