Rh3CG037300

EF-hand domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0013796
Physical Location & Seq
Reverse (-)
2526359 .. 2528326
1968 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG037300.1

Sequence Viewer

Length: 342 bp
ATGAAACAAGGTGCCAATAAGGGAGACGTTCTAAGTGAAGAACAGATTGCAGAGTTTCAGGAAGCGTTCTGTCTGTTTGACAAGGATGGAGATGGATGCATTACAATCGAAGAACTTGCCACCGCAATTAAATCAGTGGATCAAAATCCGACGGCAGAAGAATTGCAGAACATGATAAGCGAAGTTGATATTGACGGCAACGGAACCATAGAATTTGGGGAGTTCCTCAATGTCATGGTGACGAAAATGAAGGAAAATGACGCGGACGAGGAATTGAAAGAAGCTTTCAAAGTGTTCGATAAGGATCAAGATGGCTACATTTCACCTAAAGAGGTTCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
EF-hand_1

Protein Analysis

113

Amino Acids

12.6

Weight (kDa)

4.05

Isoelectric Point (pI)

40.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AIF-1 PF21008 13 - 83 3.9e-06 Allograft inflammatory factor 1
EF-hand_1 PF00036 18 - 45 1.1e-08 EF hand domain
EF-hand_7 PF13499 18 - 79 4.2e-15 EF-hand domain pair
EF-hand_6 PF13405 18 - 45 8.9e-08 EF-hand domain
EF-hand_9 PF14658 22 - 81 3.9e-08 EF-hand domain
EF-hand_8 PF13833 31 - 80 6.4e-10 EF-hand domain pair
EF-hand_1 PF00036 54 - 80 3.9e-07 EF hand domain
EF-hand_1 PF00036 91 - 112 2.5e-07 EF hand domain
EF-hand_6 PF13405 91 - 113 7e-07 EF-hand domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013796)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g03000
malus_domestica MD04G1223900.v1.1
prunus_persica Prupe.6G342600_v2.0.a1 Prupe.6G342600_v2.0.a1
pyrus_communis pycom04g19730
rosa_chinensis RchiOBHm_Chr3g0451781
rosa_laevigata RLG00000025650
rosa_multiflora Rmu_sc0006510.1_g000021
rosa_roxburghii Rroxscaffold_164G00436320 Rroxscaffold_6G00428970
rosa_rugosa Rorug02G0636000 Rorug02G0636100 Rorug02G0636200.1
rosa_samantha Rh3AG037700 Rh3CG037300 Rh3DG038100
rosa_wichuraiana Rw3G002810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 11
AccII CGCG 1 cut(s) 263
AciI CCGC 2 cut(s) 123, 263
AclWI GGATC 2 cut(s) 147, 312
AcsI RAATTY 1 cut(s) 212
AgsI TTSAA 3 cut(s) 277, 289, 338
AluBI AGCT 1 cut(s) 284
AluI AGCT 1 cut(s) 284
Alw26I GTCTC 1 cut(s) 18
AlwI GGATC 2 cut(s) 147, 312
ApoI RAATTY 1 cut(s) 212
AsuHPI GGTGA 2 cut(s) 250, 315
BanI GGYRCC 1 cut(s) 11
BccI CCATC 3 cut(s) 80, 86, 305
BceAI ACGGC 2 cut(s) 168, 211
BcgI CGANNNNNNTGC 4 cut(s) 88, 98, 122, 132
BcoDI GTCTC 1 cut(s) 18
BmiI GGNNCC 2 cut(s) 13, 205
BmsI GCATC 1 cut(s) 86
BsaBI GATNNNNATC 2 cut(s) 144, 303
Bse8I GATNNNNATC 2 cut(s) 144, 303
BseGI GGATG 2 cut(s) 91, 101
BseJI GATNNNNATC 2 cut(s) 144, 303
Bsh1236I CGCG 1 cut(s) 263
BshNI GGYRCC 1 cut(s) 11
BsmAI GTCTC 1 cut(s) 18
BsmBI CGTCTC 1 cut(s) 18
Bsp143I GATC 2 cut(s) 139, 304
BspACI CCGC 2 cut(s) 123, 263
BspFNI CGCG 1 cut(s) 263
BspLI GGNNCC 2 cut(s) 13, 205
BspPI GGATC 2 cut(s) 147, 312
BspT107I GGYRCC 1 cut(s) 11
BssMI GATC 2 cut(s) 139, 304
BstDEI CTNAG 1 cut(s) 32
BstF5I GGATG 2 cut(s) 91, 101
BstFNI CGCG 1 cut(s) 263
BstKTI GATC 2 cut(s) 142, 307
BstMAI GTCTC 1 cut(s) 18
BstMBI GATC 2 cut(s) 139, 304
BstUI CGCG 1 cut(s) 263
BtsCI GGATG 2 cut(s) 91, 101
BtsIMutI CAGTG 1 cut(s) 141
CseI GACGC 1 cut(s) 269
CviAII CATG 2 cut(s) 172, 235
CviJI RGCY 2 cut(s) 284, 315
CviKI_1 RGCY 2 cut(s) 284, 315
DdeI CTNAG 1 cut(s) 32
DpnI GATC 2 cut(s) 141, 306
DpnII GATC 2 cut(s) 139, 304
EcoT22I ATGCAT 1 cut(s) 101
Esp3I CGTCTC 1 cut(s) 18
FaeI CATG 2 cut(s) 175, 238
FaiI YATR 3 cut(s) 173, 209, 236
FatI CATG 2 cut(s) 171, 234
FokI GGATG 2 cut(s) 98, 108
HgaI GACGC 1 cut(s) 269
Hin1II CATG 2 cut(s) 175, 238
HindIII AAGCTT 1 cut(s) 282
HphI GGTGA 2 cut(s) 250, 315
Hpy188I TCNGA 1 cut(s) 150
Hpy188III TCNNGA 2 cut(s) 59, 308
Hpy99I CGWCG 1 cut(s) 154
HpyAV CCTTC 1 cut(s) 244
HpyCH4IV ACGT 1 cut(s) 27
HpyCH4V TGCA 3 cut(s) 50, 99, 166
HpyF3I CTNAG 1 cut(s) 32
HpySE526I ACGT 1 cut(s) 27
Hsp92II CATG 2 cut(s) 175, 238
Kzo9I GATC 2 cut(s) 139, 304
LpnPI CCDG 1 cut(s) 44
LweI GCATC 1 cut(s) 86
MaeII ACGT 1 cut(s) 27
MaeIII GTNAC 1 cut(s) 238
MalI GATC 2 cut(s) 141, 306
MboI GATC 2 cut(s) 139, 304
MboII GAAGA 3 cut(s) 50, 122, 170
MluCI AATT 4 cut(s) 126, 161, 212, 272
MmeI TCCRAC 1 cut(s) 173
MnlI CCTC 3 cut(s) 236, 262, 325
Mph1103I ATGCAT 1 cut(s) 101
MseI TTAA 1 cut(s) 129
MvnI CGCG 1 cut(s) 263
NdeII GATC 2 cut(s) 139, 304
NlaIII CATG 2 cut(s) 175, 238
NlaIV GGNNCC 2 cut(s) 13, 205
NmuCI GTSAC 1 cut(s) 238
NsiI ATGCAT 1 cut(s) 101
PspN4I GGNNCC 2 cut(s) 13, 205
SaqAI TTAA 1 cut(s) 129
Sau3AI GATC 2 cut(s) 139, 304
SetI ASST 5 cut(s) 13, 30, 286, 328, 336
SfaNI GCATC 1 cut(s) 86
SgeI CNNG 9 cut(s) 20, 71, 94, 128, 184, 247, 274, 280, 320
Sse9I AATT 4 cut(s) 126, 161, 212, 272
SsiI CCGC 2 cut(s) 123, 263
TaiI ACGT 1 cut(s) 30
TaqI TCGA 2 cut(s) 108, 297
TasI AATT 4 cut(s) 126, 161, 212, 272
Tru1I TTAA 1 cut(s) 129
Tru9I TTAA 1 cut(s) 129
TscAI CASTG 1 cut(s) 141
TseFI GTSAC 1 cut(s) 238
Tsp45I GTSAC 1 cut(s) 238
TspDTI ATGAA 2 cut(s) 17, 263
TspGWI ACGGA 1 cut(s) 216
TspRI CASTG 1 cut(s) 141
XapI RAATTY 1 cut(s) 212
Zsp2I ATGCAT 1 cut(s) 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.