Prupe.6G358000_v2.0.a1

Protein LUTEIN DEFICIENT 5

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Reverse (-)
30311904 .. 30317527
5624 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G358000.1

Sequence Viewer

Length: 1842 bp
ATGGCTGCCACTATTCCTCTGCTTCAGTTCGTCCCCACCAAAACCTTCCAAGCCAAGATTCACTCGAACAGACTCAGACCCACCAAGCAGAGAGGAACTTTTGGTTTATCTATGGTTACATGCTCTTCTTCTAATGGAAGAGAGCCTGATTCTGTGGATGGTGTGAAGAGCGTGGAGCGGTTGCTTGAAGAGAAAAGGCGAGCTGAGCTGTCTGCTCGGATTGCCTCAGGAGAATTCACTGTCGAGAAAACTGGTTATCCATCTCAATTGAAGAACGGTTTGTCGAAGTTGGGTGTTCCTCGGGAGATTCTAGATTTTTTATTCAGTTGGGCTGATGCACATGATGGCTCTCCCAAAATTCCAGAGGCAAAAGGTGCAATTGGTGCCATTCAAAGTGAGGCCTTTTTCATCCCACTATATGAGCTTTACCTCACTTATGGTGGAATTTACAGGCTGACCTTTGGACCAAAGTCCTTTTTGATCGTTTCTGATCCTTCCATTGCCAAACATATATTAAGGGATAATTCAAAGGCTTATTCAAAGGGAATCTTGGCTGAAATTCTAGAGTTTGTCATGGGGAAAGGACTCATCCCAGCAGACGGTGAAATATGGCGTGTTCGACGACGTGCTATAGTCCCCGCATTGCATCAGAAGTATGTAGCAGCTATGATTAATCTCTTTGGAGAAGCTACAGAGAGGCTTTGCCAAAAGCTAGATGCTGCCGCATCTGATGGGGAAGATGTAGAGATGGAGTCACTTTTCTCCCGTTTGACACTGGACATCATTGGCAAGGCACTTTTTAATTATGATTTTGATTCATTAACAAATGACACTGGGATAGTTGAGGCTGTGTACACTGTCCTGAGAGAAGCAGAAGATCGTAGTGTTGCACCAATACCAGTATGGGAAATCCCAATATGGAAAGACATTTCACCACGACAAAGAAAGGTCGCAACAGCCCTCAAACTAATCAATACTACGCTGGATGATTTGATAGCAATTTGCAAGAGGATGGTAGACGAAGAAGAGCTACAGTTTCATGAGGAGTATATGAATGAACAAGATCCTAGTATTCTCCATTTCCTTTTGGCGTCTGGGGATGATGTTTCTAGCAAGCAACTCCGTGATGACTTGATGACAATGCTTATAGCTGGGCATGAAACATCAGCTGCAGTTTTAACATGGACCTTTTATCTTCTTTCCACGGAGCCTAGCGTCATGTCGAAGCTCCAAGAGGAGGCTGATTCCGTTCTAGGAGATAGATGTCCCACAATTGAAGATGTGAAGAAACTCAAGTATGCAACTCGTGTTATTAATGAGTCCTTGAGGCTTTACCCACAACCACCTGTGTTAATTCGTCGTTCTCTTGAGGATGACAGGCTTGGAGACTACTCTATTAAAAGGAATGAGGATATATTTATTTGTATTTGGAATCTGCATCGCAGTCCAAAACAATGGGATGATGCAGATAAGTTTAAGCCTGAAAGATGGCCATTAGATGGACCCAATCCAAATGAGACGAACCAAAATTTTCGTTACTTGCCCTTTGGTGGAGGACCACGGAAATGTGTAGGTGACATGTTTGCCACATACGAGACTGTGGTGGCACTTGCAATGCTTGTTCGAAGATTTAACTTTCAAATGGCACTTGGTGCTCCTGAGGTCAAGATGACTACGGGAGCAACAATTCACACCACAGAAGGTTTGAAGATGACAGTTACCAGGAGAATAAAACCTCCCATAGTGCCCACATTGGAGATGCCAACATTTGAAGTGGATACATCTGTAGGTGCTTCAAAAGGGGATTCTTTAGTTGGTAAAAAAGATAATGCTGTAAATTGA

Protein Analysis

614

Amino Acids

68.71

Weight (kDa)

5.79

Isoelectric Point (pI)

43.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 383
AccB7I CCANNNNNTGG 1 cut(s) 1499
AccBSI CCGCTC 1 cut(s) 178
AccI GTMKAC 1 cut(s) 1017
AciI CCGC 3 cut(s) 178, 639, 723
AclWI GGATC 2 cut(s) 485, 1058
AcoI YGGCCR 1 cut(s) 1490
AcsI RAATTY 5 cut(s) 233, 357, 444, 558, 1528
AcuI CTGAAG 1 cut(s) 8
AcyI GRCGYC 1 cut(s) 1091
AdeI CACNNNGTG 1 cut(s) 1652
AfaI GTAC 1 cut(s) 854
AfiI CCNNNNNNNGG 4 cut(s) 599, 1237, 1499, 1550
AflIII ACRYGT 1 cut(s) 1578
AjiI CACGTC 1 cut(s) 626
AjnI CCWGG 1 cut(s) 1721
AjuI GAANNNNNNNTTGG 2 cut(s) 42, 74
Alw21I GWGCWC 1 cut(s) 1657
Alw26I GTCTC 3 cut(s) 1380, 1511, 1589
AlwI GGATC 2 cut(s) 485, 1058
Ama87I CYCGRG 1 cut(s) 300
AoxI GGCC 2 cut(s) 399, 1490
ApeKI GCWGC 4 cut(s) 5, 662, 719, 1169
ApoI RAATTY 5 cut(s) 233, 357, 444, 558, 1528
AseI ATTAAT 2 cut(s) 672, 1314
AspS9I GGNCC 4 cut(s) 464, 1185, 1502, 1556
AsuHPI GGTGA 3 cut(s) 614, 924, 1586
AsuII TTCGAA 1 cut(s) 1624
AvaI CYCGRG 1 cut(s) 300
AvaII GGWCC 4 cut(s) 464, 1185, 1502, 1556
AxyI CCTNAGG 2 cut(s) 226, 1659
BaeGI GKGCMC 1 cut(s) 1749
BaeI ACNNNNGTAYC 2 cut(s) 1770, 1803
BalI TGGCCA 1 cut(s) 1492
BanI GGYRCC 1 cut(s) 383
BarI GAAGNNNNNNTAC 2 cut(s) 1014, 1046
BauI CACGAG 1 cut(s) 1305
Bbv12I GWGCWC 1 cut(s) 1657
BbvI GCAGC 3 cut(s) 674, 706, 1156
BccI CCATC 8 cut(s) 152, 268, 338, 725, 742, 1006, 1482, 1493
BciT130I CCWGG 1 cut(s) 1723
BciVI GTATCC 1 cut(s) 1771
BcoDI GTCTC 3 cut(s) 1380, 1511, 1589
BfaI CTAG 7 cut(s) 311, 563, 713, 1068, 1110, 1212, 1253
BfmI CTRYAG 5 cut(s) 630, 690, 1031, 1170, 1785
BfuI GTATCC 1 cut(s) 1771
BisI GCNGC 5 cut(s) 6, 663, 720, 723, 1170
BlpI GCTNAGC 1 cut(s) 204
BlsI GCNGC 5 cut(s) 7, 664, 721, 724, 1171
Bme1390I CCNGG 1 cut(s) 1723
Bme18I GGWCC 4 cut(s) 464, 1185, 1502, 1556
BmeT110I CYCGRG 1 cut(s) 300
BmgBI CACGTC 1 cut(s) 626
BmgT120I GGNCC 4 cut(s) 464, 1185, 1502, 1556
BmiI GGNNCC 3 cut(s) 385, 1209, 1504
BmrFI CCNGG 1 cut(s) 1723
BmrI ACTGGG 1 cut(s) 843
BmsI GCATC 7 cut(s) 325, 655, 706, 734, 1447, 1453, 1749
BmuI ACTGGG 1 cut(s) 843
BoxI GACNNNNGTC 1 cut(s) 469
Bpu1102I GCTNAGC 1 cut(s) 204
Bpu14I TTCGAA 1 cut(s) 1624
BpuEI CTTGAG 3 cut(s) 1277, 1345, 1388
BsaHI GRCGYC 1 cut(s) 1091
BsaJI CCNNGG 3 cut(s) 299, 1203, 1559
Bsc4I CCNNNNNNNGG 4 cut(s) 599, 1237, 1499, 1550
Bse1I ACTGG 4 cut(s) 256, 780, 838, 899
Bse21I CCTNAGG 2 cut(s) 226, 1659
Bse3DI GCAATG 3 cut(s) 498, 641, 1620
BseBI CCWGG 1 cut(s) 1723
BseDI CCNNGG 3 cut(s) 299, 1203, 1559
BseGI GGATG 8 cut(s) 163, 408, 588, 991, 1017, 1105, 1378, 1465
BseLI CCNNNNNNNGG 4 cut(s) 599, 1237, 1499, 1550
BseMI GCAATG 3 cut(s) 498, 641, 1620
BseMII CTCAG 5 cut(s) 88, 195, 240, 854, 1650
BseNI ACTGG 4 cut(s) 256, 780, 838, 899
BseRI GAGGAG 2 cut(s) 1058, 1250
BseSI GKGCMC 1 cut(s) 1749
BseXI GCAGC 3 cut(s) 674, 706, 1156
BseYI CCCAGC 2 cut(s) 592, 1151
BshFI GGCC 2 cut(s) 401, 1492
BshNI GGYRCC 1 cut(s) 383
BsiHKAI GWGCWC 1 cut(s) 1657
BsiHKCI CYCGRG 1 cut(s) 300
BslFI GGGAC 3 cut(s) 17, 620, 1251
BslI CCNNNNNNNGG 4 cut(s) 599, 1237, 1499, 1550
BsmAI GTCTC 3 cut(s) 1380, 1511, 1589
BsmBI CGTCTC 1 cut(s) 1511
BsmFI GGGAC 3 cut(s) 17, 620, 1251
BsnI GGCC 2 cut(s) 401, 1492
BsoBI CYCGRG 1 cut(s) 300
Bsp119I TTCGAA 1 cut(s) 1624
Bsp1286I GDGCHC 2 cut(s) 1657, 1749
Bsp1407I TGTACA 1 cut(s) 852
Bsp143I GATC 4 cut(s) 480, 490, 877, 1063
Bsp1720I GCTNAGC 1 cut(s) 204
BspACI CCGC 3 cut(s) 178, 639, 723
BspANI GGCC 2 cut(s) 401, 1492
BspCNI CTCAG 5 cut(s) 87, 196, 239, 855, 1651
BspHI TCATGA 1 cut(s) 1039
BspLI GGNNCC 3 cut(s) 385, 1209, 1504
BspMAI CTGCAG 1 cut(s) 1174
BspPI GGATC 2 cut(s) 485, 1058
BspQI GCTCTTC 3 cut(s) 130, 161, 1020
BspT104I TTCGAA 1 cut(s) 1624
BspT107I GGYRCC 1 cut(s) 383
BsrBI CCGCTC 1 cut(s) 178
BsrDI GCAATG 3 cut(s) 498, 641, 1620
BsrGI TGTACA 1 cut(s) 852
BsrI ACTGG 4 cut(s) 256, 780, 838, 899
BssECI CCNNGG 3 cut(s) 299, 1203, 1559
BssMI GATC 4 cut(s) 480, 490, 877, 1063
BssNI GRCGYC 1 cut(s) 1091
BssSI CACGAG 1 cut(s) 1305
Bst2BI CACGAG 1 cut(s) 1305
Bst2UI CCWGG 1 cut(s) 1723
Bst4CI ACNGT 7 cut(s) 241, 278, 602, 859, 1035, 1600, 1717
Bst6I CTCTTC 5 cut(s) 130, 133, 161, 183, 1020
BstACI GRCGYC 1 cut(s) 1091
BstAPI GCANNNNNTGC 3 cut(s) 374, 383, 1652
BstAUI TGTACA 1 cut(s) 852
BstBI TTCGAA 1 cut(s) 1624
BstC8I GCNNGC 2 cut(s) 201, 1115
BstDEI CTNAG 5 cut(s) 74, 204, 226, 863, 1659
BstDSI CCRYGG 2 cut(s) 1203, 1559
BstF5I GGATG 8 cut(s) 163, 408, 588, 991, 1017, 1105, 1378, 1465
BstKTI GATC 4 cut(s) 483, 493, 880, 1066
BstMAI GTCTC 3 cut(s) 1380, 1511, 1589
BstMBI GATC 4 cut(s) 480, 490, 877, 1063
BstMWI GCNNNNNNNGC 5 cut(s) 205, 221, 374, 383, 1652
BstNI CCWGG 1 cut(s) 1723
BstNSI RCATGY 2 cut(s) 123, 1582
BstPAI GACNNNNGTC 1 cut(s) 469
BstSCI CCNGG 1 cut(s) 1721
BstSFI CTRYAG 5 cut(s) 630, 690, 1031, 1170, 1785
BstSLI GKGCMC 1 cut(s) 1749
BstV1I GCAGC 3 cut(s) 674, 706, 1156
BstX2I RGATCY 1 cut(s) 1063
BstXI CCANNNNNNTGG 1 cut(s) 1455
BstYI RGATCY 1 cut(s) 1063
Bsu36I CCTNAGG 2 cut(s) 226, 1659
BsuI GTATCC 1 cut(s) 1771
BsuRI GGCC 2 cut(s) 401, 1492
BtgI CCRYGG 2 cut(s) 1203, 1559
BtgZI GCGATG 1 cut(s) 1424
BtrI CACGTC 1 cut(s) 626
BtsCI GGATG 8 cut(s) 163, 408, 588, 991, 1017, 1105, 1378, 1465
BtsIMutI CAGTG 4 cut(s) 237, 773, 831, 855
Cac8I GCNNGC 2 cut(s) 201, 1115
CciI TCATGA 1 cut(s) 1039
Cfr13I GGNCC 4 cut(s) 464, 1185, 1502, 1556
CseI GACGC 2 cut(s) 1080, 1204
Csp6I GTAC 1 cut(s) 853
CviAII CATG 8 cut(s) 120, 341, 574, 1040, 1157, 1182, 1219, 1579
CviQI GTAC 1 cut(s) 853
DdeI CTNAG 5 cut(s) 74, 204, 226, 863, 1659
DpnI GATC 4 cut(s) 482, 492, 879, 1065
DpnII GATC 4 cut(s) 480, 490, 877, 1063
DraIII CACNNNGTG 1 cut(s) 1652
EaeI YGGCCR 1 cut(s) 1490
Eam1104I CTCTTC 5 cut(s) 130, 133, 161, 183, 1020
EarI CTCTTC 5 cut(s) 130, 133, 161, 183, 1020
Eco147I AGGCCT 1 cut(s) 401
Eco47I GGWCC 4 cut(s) 464, 1185, 1502, 1556
Eco57I CTGAAG 1 cut(s) 8
Eco81I CCTNAGG 2 cut(s) 226, 1659
Eco88I CYCGRG 1 cut(s) 300
EcoRI GAATTC 1 cut(s) 233
EcoRII CCWGG 1 cut(s) 1721
Esp3I CGTCTC 1 cut(s) 1511
FaeI CATG 8 cut(s) 123, 344, 577, 1043, 1160, 1185, 1222, 1582
FalI AAGNNNNNCTT 2 cut(s) 533, 565
FaqI GGGAC 3 cut(s) 17, 620, 1251
FatI CATG 8 cut(s) 119, 340, 573, 1039, 1156, 1181, 1218, 1578
FauI CCCGC 1 cut(s) 646
FblI GTMKAC 1 cut(s) 1017
Fnu4HI GCNGC 5 cut(s) 6, 663, 720, 723, 1170
FokI GGATG 8 cut(s) 170, 395, 575, 998, 1024, 1112, 1385, 1472
Fsp4HI GCNGC 5 cut(s) 6, 663, 720, 723, 1170
FspBI CTAG 7 cut(s) 311, 563, 713, 1068, 1110, 1212, 1253
GluI GCNGC 5 cut(s) 6, 663, 720, 723, 1170
GsaI CCCAGC 2 cut(s) 596, 1155
HaeIII GGCC 2 cut(s) 401, 1492
HgaI GACGC 2 cut(s) 1080, 1204
Hin1I GRCGYC 1 cut(s) 1091
Hin1II CATG 8 cut(s) 123, 344, 577, 1043, 1160, 1185, 1222, 1582
HphI GGTGA 3 cut(s) 614, 924, 1586
Hpy166II GTNNAC 3 cut(s) 853, 855, 1018
Hpy188I TCNGA 5 cut(s) 77, 219, 490, 651, 730
Hpy8I GTNNAC 3 cut(s) 853, 855, 1018
Hpy99I CGWCG 3 cut(s) 624, 627, 1362
HpyAV CCTTC 3 cut(s) 55, 504, 1694
HpyCH4III ACNGT 7 cut(s) 241, 278, 602, 859, 1035, 1600, 1717
HpyCH4IV ACGT 1 cut(s) 625
HpyF10VI GCNNNNNNNGC 5 cut(s) 205, 221, 374, 383, 1652
HpyF3I CTNAG 5 cut(s) 74, 204, 226, 863, 1659
HpySE526I ACGT 1 cut(s) 625
Hsp92I GRCGYC 1 cut(s) 1091
Hsp92II CATG 8 cut(s) 123, 344, 577, 1043, 1160, 1185, 1222, 1582
Kzo9I GATC 4 cut(s) 480, 490, 877, 1063
LguI GCTCTTC 3 cut(s) 130, 161, 1020
LmnI GCTCC 5 cut(s) 175, 1207, 1233, 1660, 1679
Lsp1109I GCAGC 3 cut(s) 674, 706, 1156
LweI GCATC 7 cut(s) 325, 655, 706, 734, 1447, 1453, 1749
MaeI CTAG 7 cut(s) 311, 563, 713, 1068, 1110, 1212, 1253
MaeII ACGT 1 cut(s) 625
MaeIII GTNAC 5 cut(s) 115, 753, 1535, 1574, 1717
MalI GATC 4 cut(s) 482, 492, 879, 1065
MbiI CCGCTC 1 cut(s) 178
MboI GATC 4 cut(s) 480, 490, 877, 1063
MfeI CAATTG 3 cut(s) 266, 378, 1272
MflI RGATCY 1 cut(s) 1063
MhlI GDGCHC 2 cut(s) 1657, 1749
MlsI TGGCCA 1 cut(s) 1492
MluNI TGGCCA 1 cut(s) 1492
MlyI GAGTC 4 cut(s) 66, 579, 761, 1328
Mox20I TGGCCA 1 cut(s) 1492
MscI TGGCCA 1 cut(s) 1492
MslI CAYNNNNRTG 1 cut(s) 1564
Msp20I TGGCCA 1 cut(s) 1492
MspA1I CMGCKG 1 cut(s) 1169
MspR9I CCNGG 1 cut(s) 1723
MunI CAATTG 3 cut(s) 266, 378, 1272
MvaI CCWGG 1 cut(s) 1723
MwoI GCNNNNNNNGC 5 cut(s) 205, 221, 374, 383, 1652
NdeII GATC 4 cut(s) 480, 490, 877, 1063
NlaIII CATG 8 cut(s) 123, 344, 577, 1043, 1160, 1185, 1222, 1582
NlaIV GGNNCC 3 cut(s) 385, 1209, 1504
NmuCI GTSAC 2 cut(s) 753, 1574
NspI RCATGY 2 cut(s) 123, 1582
NspV TTCGAA 1 cut(s) 1624
PagI TCATGA 1 cut(s) 1039
PceI AGGCCT 1 cut(s) 401
PciI ACATGT 1 cut(s) 1578
PciSI GCTCTTC 3 cut(s) 130, 161, 1020
PfeI GAWTC 8 cut(s) 58, 149, 307, 546, 815, 1244, 1432, 1805
PflMI CCANNNNNTGG 1 cut(s) 1499
PkrI GCNGC 5 cut(s) 7, 664, 721, 724, 1171
PleI GAGTC 4 cut(s) 66, 579, 760, 1327
PpsI GAGTC 4 cut(s) 66, 579, 760, 1327
PscI ACATGT 1 cut(s) 1578
PshAI GACNNNNGTC 1 cut(s) 469
PshBI ATTAAT 2 cut(s) 672, 1314
Psp6I CCWGG 1 cut(s) 1721
PspFI CCCAGC 2 cut(s) 592, 1151
PspGI CCWGG 1 cut(s) 1721
PspN4I GGNNCC 3 cut(s) 385, 1209, 1504
PspPI GGNCC 4 cut(s) 464, 1185, 1502, 1556
PstI CTGCAG 1 cut(s) 1174
PsuI RGATCY 1 cut(s) 1063
PvuII CAGCTG 1 cut(s) 1169
RsaI GTAC 1 cut(s) 854
RsaNI GTAC 1 cut(s) 853
RseI CAYNNNNRTG 1 cut(s) 1564
SapI GCTCTTC 3 cut(s) 130, 161, 1020
SatI GCNGC 5 cut(s) 6, 663, 720, 723, 1170
Sau3AI GATC 4 cut(s) 480, 490, 877, 1063
Sau96I GGNCC 4 cut(s) 464, 1185, 1502, 1556
SchI GAGTC 4 cut(s) 66, 579, 761, 1328
ScrFI CCNGG 1 cut(s) 1723
SduI GDGCHC 2 cut(s) 1657, 1749
SfaNI GCATC 7 cut(s) 325, 655, 706, 734, 1447, 1453, 1749
SfcI CTRYAG 5 cut(s) 630, 690, 1031, 1170, 1785
SfuI TTCGAA 1 cut(s) 1624
SinI GGWCC 4 cut(s) 464, 1185, 1502, 1556
SmiMI CAYNNNNRTG 1 cut(s) 1564
SmlI CTYRAG 3 cut(s) 1292, 1324, 1367
SmoI CTYRAG 3 cut(s) 1292, 1324, 1367
SseBI AGGCCT 1 cut(s) 401
SsiI CCGC 3 cut(s) 178, 639, 723
SspMI CTAG 7 cut(s) 311, 563, 713, 1068, 1110, 1212, 1253
StuI AGGCCT 1 cut(s) 401
StyD4I CCNGG 1 cut(s) 1721
TaaI ACNGT 7 cut(s) 241, 278, 602, 859, 1035, 1600, 1717
TaiI ACGT 1 cut(s) 628
TaqI TCGA 6 cut(s) 65, 243, 284, 619, 1223, 1624
TatI WGTACW 1 cut(s) 852
TauI GCSGC 1 cut(s) 725
TfiI GAWTC 8 cut(s) 58, 149, 307, 546, 815, 1244, 1432, 1805
TscAI CASTG 4 cut(s) 244, 780, 838, 862
TseFI GTSAC 2 cut(s) 753, 1574
TseI GCWGC 4 cut(s) 5, 662, 719, 1169
Tsp45I GTSAC 2 cut(s) 753, 1574
TspDTI ATGAA 6 cut(s) 397, 807, 1028, 1067, 1071, 1173
TspGWI ACGGA 4 cut(s) 1112, 1220, 1237, 1576
TspRI CASTG 4 cut(s) 244, 780, 838, 862
Van91I CCANNNNNTGG 1 cut(s) 1499
VpaK11BI GGWCC 4 cut(s) 464, 1185, 1502, 1556
VspI ATTAAT 2 cut(s) 672, 1314
XapI RAATTY 5 cut(s) 233, 357, 444, 558, 1528
XbaI TCTAGA 2 cut(s) 310, 562
XceI RCATGY 2 cut(s) 123, 1582
XcmI CCANNNNNNNNNTGG 1 cut(s) 900
XmiI GTMKAC 1 cut(s) 1017
XspI CTAG 7 cut(s) 311, 563, 713, 1068, 1110, 1212, 1253
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.