Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005379

Physical Location & Seq

Genomic Coordinates Reverse (-)

72806488 .. 72807746

Gene Structure 1259 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0611900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGAACGTCGTGGGAGCCGTCGCTAACAGCTTCGGCCTTGTCACAAACAGCTTCTATGAGCTCGAACCAGTCTTCGTCGACCACTGGAACACCGAGTCTTGGCCCAACTCATGGAATGTGGGACCACTCTGCCAGCTGAAACCTAAATCAGTACTCCAAGATGACAAGCCTGTCTGGATTGAATGGCTAGACAAGAAGAAGGTTGAAGGCAGCCGTCTTTTGTACGTGGCATTTGGAACTCAAGCGGTGATCTCATCGGAGCAGCTTCAAGAGATAGCAAACGCGTTGGAGAAGTCGGACGTCAACTTTCTGTGGGTGATAAGGAAGAAAGAGAGGTATACTTGGTGGGACTCGGAGTTCGAGGAGAGGGTGAGAGGGAGAGGGATGGTGGTCAGCGAGTGGGTTGACCAGACGGACATACTCAACCACGAGAGCGTGGAGGGTTTTTTGAGTCATTGCGGGTTGAATTCGACGATGGAGGCCATTTTCGCCGGAGTACCGATTCTGGCGTGGCTAATGATGGCGGAGCAGCCGCTGAATGCGAGGATGGTGGTGGAGGAGATAAATGTTGGTTTGAGAGTAGAGACGTGCGACGGGTCGGTTAGGGGGTTTGTGAAGGCTGAAGGGTTTGAGAAGATGGTGAAGAAGTTGATGGAGGGGGAGGAGGGTGAGGTGGTGAGGAAGAAGGTGAAGGAGGTTGGTGAGGTGGCGAGGAAGGCGGTGGAGGAGGGCGGGTCCTCGTGGCGGACGTTGGGGTTGCTCATTGATGAGGTATGCAGTAAAGAAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0010291 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016122 GO:0016123 GO:0016491 GO:0031967 GO:0031975 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0055114 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

263

Amino Acids

29.82

Weight (kDa)

4.92

Isoelectric Point (pI)

29.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	74 - 187	7.3e-16	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005379)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31800
fragaria_vesca	FvH4_6g00890 FvH4_6g00890 FvH4_6g00890 FvH4_6g00890 FvH4_6g00890 FvH4_6g00890 FvH4_6g00890
malus_domestica	MD04G1239800.v1.1 MD12G1257000.v1.1
prunus_persica	Prupe.6G358000_v2.0.a1 Prupe.6G358000_v2.0.a1 Prupe.6G358000_v2.0.a1 Prupe.6G358000_v2.0.a1
pyrus_communis	pycom04g21180 pycom12g23570
rosa_chinensis	RchiOBHm_Chr3g0448381
rosa_laevigata	RLG00000025918
rosa_multiflora	Rmu_co8392743.1_g000001 Rmu_sc0008044.1_g000006
rosa_roxburghii	Rroxscaffold_6G00426210 Rroxscaffold_6G00426580
rosa_rugosa	Rorug02G0611800 Rorug02G0611900
rosa_samantha	Rh3AG011100 Rh3BG010900 Rh3CG010600 Rh3DG011300
rosa_wichuraiana	Rw3G000870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	170
AatII	GACGTC	1 cut(s)	303
AccB7I	CCANNNNNTGG	1 cut(s)	111
AccI	GTMKAC	2 cut(s)	78, 338
AccII	CGCG	1 cut(s)	284
AciI	CCGC	7 cut(s)	245, 459, 524, 533, 719, 732, 745
AcsI	RAATTY	1 cut(s)	466
AcuI	CTGAAG	1 cut(s)	642
AcyI	GRCGYC	1 cut(s)	300
AfaI	GTAC	3 cut(s)	153, 224, 498
AfiI	CCNNNNNNNGG	3 cut(s)	99, 111, 744
AflIII	ACRYGT	1 cut(s)	282
AgsI	TTSAA	4 cut(s)	182, 206, 269, 466
AjiI	CACGTC	1 cut(s)	588
AloI	GAACNNNNNNTCC	2 cut(s)	341, 373
AluBI	AGCT	5 cut(s)	30, 51, 61, 136, 265
AluI	AGCT	5 cut(s)	30, 51, 61, 136, 265
Alw21I	GWGCWC	1 cut(s)	63
Alw26I	GTCTC	1 cut(s)	578
AlwNI	CAGNNNCTG	1 cut(s)	535
AoxI	GGCC	3 cut(s)	34, 101, 480
ApeKI	GCWGC	3 cut(s)	210, 262, 529
ApoI	RAATTY	1 cut(s)	466
ArsI	GACNNNNNNTTYG	2 cut(s)	341, 373
AspS9I	GGNCC	3 cut(s)	102, 122, 735
AsuHPI	GGTGA	8 cut(s)	259, 328, 382, 652, 680, 688, 700, 713
AvaII	GGWCC	2 cut(s)	122, 735
BanII	GRGCYC	1 cut(s)	63
BauI	CACGAG	2 cut(s)	428, 739
BbsI	GAAGAC	1 cut(s)	64
Bbv12I	GWGCWC	1 cut(s)	63
BbvI	GCAGC	3 cut(s)	222, 274, 541
BccI	CCATC	6 cut(s)	379, 469, 514, 541, 631, 646
BceAI	ACGGC	2 cut(s)	2, 198
BcoDI	GTCTC	1 cut(s)	578
BfaI	CTAG	2 cut(s)	188, 790
BisI	GCNGC	4 cut(s)	211, 263, 530, 533
BlsI	GCNGC	4 cut(s)	212, 264, 531, 534
BmcAI	AGTACT	1 cut(s)	153
Bme18I	GGWCC	2 cut(s)	122, 735
BmgBI	CACGTC	1 cut(s)	588
BmgT120I	GGNCC	3 cut(s)	102, 122, 735
BmiI	GGNNCC	3 cut(s)	16, 123, 736
BpiI	GAAGAC	1 cut(s)	64
BpuEI	CTTGAG	1 cut(s)	225
BsaAI	YACGTR	1 cut(s)	226
BsaHI	GRCGYC	1 cut(s)	300
BsaXI	ACNNNNNCTCC	2 cut(s)	719, 749
Bsc4I	CCNNNNNNNGG	3 cut(s)	99, 111, 744
Bse1I	ACTGG	2 cut(s)	68, 89
Bse3DI	GCAATG	1 cut(s)	454
BseGI	GGATG	2 cut(s)	390, 552
BseLI	CCNNNNNNNGG	3 cut(s)	99, 111, 744
BseMI	GCAATG	1 cut(s)	454
BseNI	ACTGG	2 cut(s)	68, 89
BseRI	GAGGAG	4 cut(s)	377, 572, 677, 740
BseXI	GCAGC	3 cut(s)	222, 274, 541
Bsh1236I	CGCG	1 cut(s)	284
BshFI	GGCC	3 cut(s)	36, 103, 482
BsiHKAI	GWGCWC	1 cut(s)	63
BsiSI	CCGG	1 cut(s)	492
BslFI	GGGAC	2 cut(s)	135, 362
BslI	CCNNNNNNNGG	3 cut(s)	99, 111, 744
BsmAI	GTCTC	1 cut(s)	578
BsmBI	CGTCTC	1 cut(s)	578
BsmFI	GGGAC	2 cut(s)	135, 362
BsmI	GAATGC	1 cut(s)	544
BsnI	GGCC	3 cut(s)	36, 103, 482
Bsp1286I	GDGCHC	1 cut(s)	63
Bsp143I	GATC	1 cut(s)	249
BspACI	CCGC	7 cut(s)	245, 459, 524, 533, 719, 732, 745
BspANI	GGCC	3 cut(s)	36, 103, 482
BspFNI	CGCG	1 cut(s)	284
BspLI	GGNNCC	3 cut(s)	16, 123, 736
BsrDI	GCAATG	1 cut(s)	454
BsrI	ACTGG	2 cut(s)	68, 89
BssMI	GATC	1 cut(s)	249
BssNAI	GTATAC	1 cut(s)	339
BssNI	GRCGYC	1 cut(s)	300
BssSI	CACGAG	2 cut(s)	428, 739
Bst1107I	GTATAC	1 cut(s)	339
Bst2BI	CACGAG	2 cut(s)	428, 739
BstACI	GRCGYC	1 cut(s)	300
BstBAI	YACGTR	1 cut(s)	226
BstC8I	GCNNGC	1 cut(s)	134
BstF5I	GGATG	2 cut(s)	390, 552
BstFNI	CGCG	1 cut(s)	284
BstKTI	GATC	1 cut(s)	252
BstMAI	GTCTC	1 cut(s)	578
BstMBI	GATC	1 cut(s)	249
BstMWI	GCNNNNNNNGC	2 cut(s)	488, 716
BstUI	CGCG	1 cut(s)	284
BstV1I	GCAGC	3 cut(s)	222, 274, 541
BstV2I	GAAGAC	1 cut(s)	64
BstZ17I	GTATAC	1 cut(s)	339
BsuRI	GGCC	3 cut(s)	36, 103, 482
BtrI	CACGTC	1 cut(s)	588
BtsCI	GGATG	2 cut(s)	390, 552
BtsIMutI	CAGTG	1 cut(s)	82
Cac8I	GCNNGC	1 cut(s)	134
CaiI	CAGNNNCTG	1 cut(s)	535
Cfr13I	GGNCC	3 cut(s)	102, 122, 735
Csp6I	GTAC	3 cut(s)	152, 223, 497
CviAII	CATG	1 cut(s)	111
CviQI	GTAC	3 cut(s)	152, 223, 497
DpnI	GATC	1 cut(s)	251
DpnII	GATC	1 cut(s)	249
DrdI	GACNNNNNNGTC	1 cut(s)	170
DseDI	GACNNNNNNGTC	1 cut(s)	170
EciI	GGCGGA	2 cut(s)	539, 760
Ecl136II	GAGCTC	1 cut(s)	61
Eco24I	GRGCYC	1 cut(s)	63
Eco47I	GGWCC	2 cut(s)	122, 735
Eco53kI	GAGCTC	1 cut(s)	61
Eco57I	CTGAAG	1 cut(s)	642
EcoICRI	GAGCTC	1 cut(s)	61
EcoO109I	RGGNCCY	1 cut(s)	735
EcoRI	GAATTC	1 cut(s)	466
EcoT38I	GRGCYC	1 cut(s)	63
Esp3I	CGTCTC	1 cut(s)	578
FaeI	CATG	1 cut(s)	114
FaiI	YATR	5 cut(s)	57, 112, 339, 419, 775
FaqI	GGGAC	2 cut(s)	135, 362
FatI	CATG	1 cut(s)	110
FauI	CCCGC	2 cut(s)	452, 725
FblI	GTMKAC	2 cut(s)	78, 338
Fnu4HI	GCNGC	4 cut(s)	211, 263, 530, 533
FokI	GGATG	2 cut(s)	397, 559
FriOI	GRGCYC	1 cut(s)	63
Fsp4HI	GCNGC	4 cut(s)	211, 263, 530, 533
FspBI	CTAG	2 cut(s)	188, 790
GluI	GCNGC	4 cut(s)	211, 263, 530, 533
HaeIII	GGCC	3 cut(s)	36, 103, 482
HapII	CCGG	1 cut(s)	492
Hin1I	GRCGYC	1 cut(s)	300
Hin1II	CATG	1 cut(s)	114
HincII	GTYRAC	3 cut(s)	79, 304, 406
HindII	GTYRAC	3 cut(s)	79, 304, 406
HinfI	GANTC	4 cut(s)	95, 350, 451, 502
HpaII	CCGG	1 cut(s)	492
HphI	GGTGA	8 cut(s)	259, 328, 382, 652, 680, 688, 700, 713
Hpy166II	GTNNAC	4 cut(s)	79, 304, 339, 406
Hpy188I	TCNGA	3 cut(s)	259, 298, 355
Hpy188III	TCNNGA	2 cut(s)	175, 269
Hpy8I	GTNNAC	4 cut(s)	79, 304, 339, 406
Hpy99I	CGWCG	5 cut(s)	11, 23, 80, 475, 596
HpyAV	CCTTC	7 cut(s)	193, 200, 610, 617, 679, 685, 709
HpyCH4IV	ACGT	5 cut(s)	6, 225, 300, 587, 749
HpyCH4V	TGCA	1 cut(s)	777
HpyF10VI	GCNNNNNNNGC	2 cut(s)	488, 716
HpySE526I	ACGT	5 cut(s)	6, 225, 300, 587, 749
Hsp92I	GRCGYC	1 cut(s)	300
Hsp92II	CATG	1 cut(s)	114
Kzo9I	GATC	1 cut(s)	249
LmnI	GCTCC	3 cut(s)	14, 259, 526
LpnPI	CCDG	8 cut(s)	70, 81, 146, 160, 183, 422, 491, 505
Lsp1109I	GCAGC	3 cut(s)	222, 274, 541
MaeI	CTAG	2 cut(s)	188, 790
MaeII	ACGT	5 cut(s)	6, 225, 300, 587, 749
MaeIII	GTNAC	1 cut(s)	40
MalI	GATC	1 cut(s)	251
MboI	GATC	1 cut(s)	249
MboII	GAAGA	6 cut(s)	64, 208, 337, 646, 655, 694
MhlI	GDGCHC	1 cut(s)	63
MluCI	AATT	1 cut(s)	466
MluI	ACGCGT	1 cut(s)	282
MlyI	GAGTC	3 cut(s)	104, 344, 460
MmeI	TCCRAC	2 cut(s)	267, 276
MspA1I	CMGCKG	2 cut(s)	136, 535
MspI	CCGG	1 cut(s)	492
Mva1269I	GAATGC	1 cut(s)	544
MvnI	CGCG	1 cut(s)	284
MwoI	GCNNNNNNNGC	2 cut(s)	488, 716
NdeII	GATC	1 cut(s)	249
NlaIII	CATG	1 cut(s)	114
NlaIV	GGNNCC	3 cut(s)	16, 123, 736
NmuCI	GTSAC	1 cut(s)	40
PcsI	WCGNNNNNNNCGW	2 cut(s)	15, 746
PctI	GAATGC	1 cut(s)	544
PfeI	GAWTC	1 cut(s)	502
PflMI	CCANNNNNTGG	1 cut(s)	111
PkrI	GCNGC	4 cut(s)	212, 264, 531, 534
PleI	GAGTC	3 cut(s)	103, 344, 459
PpsI	GAGTC	3 cut(s)	103, 344, 459
Ppu21I	YACGTR	1 cut(s)	226
PpuMI	RGGWCCY	1 cut(s)	735
Psp124BI	GAGCTC	1 cut(s)	63
Psp5II	RGGWCCY	1 cut(s)	735
PspN4I	GGNNCC	3 cut(s)	16, 123, 736
PspPI	GGNCC	3 cut(s)	102, 122, 735
PspPPI	RGGWCCY	1 cut(s)	735
PstNI	CAGNNNCTG	1 cut(s)	535
PvuII	CAGCTG	1 cut(s)	136
RsaI	GTAC	3 cut(s)	153, 224, 498
RsaNI	GTAC	3 cut(s)	152, 223, 497
SacI	GAGCTC	1 cut(s)	63
SalI	GTCGAC	1 cut(s)	77
SatI	GCNGC	4 cut(s)	211, 263, 530, 533
Sau3AI	GATC	1 cut(s)	249
Sau96I	GGNCC	3 cut(s)	102, 122, 735
ScaI	AGTACT	1 cut(s)	153
SchI	GAGTC	3 cut(s)	104, 344, 460
SduI	GDGCHC	1 cut(s)	63
SinI	GGWCC	2 cut(s)	122, 735
SmlI	CTYRAG	1 cut(s)	240
SmoI	CTYRAG	1 cut(s)	240
Sse9I	AATT	1 cut(s)	466
SsiI	CCGC	7 cut(s)	245, 459, 524, 533, 719, 732, 745
SspMI	CTAG	2 cut(s)	188, 790
SstI	GAGCTC	1 cut(s)	63
TaiI	ACGT	5 cut(s)	9, 228, 303, 590, 752
TaqI	TCGA	4 cut(s)	63, 78, 360, 470
TasI	AATT	1 cut(s)	466
TatI	WGTACW	1 cut(s)	151
TauI	GCSGC	1 cut(s)	535
TfiI	GAWTC	1 cut(s)	502
TscAI	CASTG	1 cut(s)	89
TseFI	GTSAC	1 cut(s)	40
TseI	GCWGC	3 cut(s)	210, 262, 529
Tsp45I	GTSAC	1 cut(s)	40
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	428
TspRI	CASTG	1 cut(s)	89
Van91I	CCANNNNNTGG	1 cut(s)	111
VpaK11BI	GGWCC	2 cut(s)	122, 735
XapI	RAATTY	1 cut(s)	466
XmiI	GTMKAC	2 cut(s)	78, 338
XspI	CTAG	2 cut(s)	188, 790
ZraI	GACGTC	1 cut(s)	301
ZrmI	AGTACT	1 cut(s)	153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.