Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003878

Physical Location & Seq

Genomic Coordinates Forward (+)

72800029 .. 72801608

Gene Structure 1580 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0611800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 219 bp

ATGGAGAAGGATCAGAAGGTAGCAACTGAAGACCCCAAGGTGGATTTGTTCGAGGACGATGACGAGTTTGAAGAGTTTAACATCAATCAAGAGTGGGACGAGAAAGAAGAAGGAAAAGAAGCACTGCAGCAATGGGAGGATGATTGGGATGATGATGATGTCAATGACGACTTCTCTGTGCAGCTGAAGAAAGAACTGGAGAGCAACACCGGGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BCIP

Protein Analysis

72

Amino Acids

8.64

Weight (kDa)

4.05

Isoelectric Point (pI)

33.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DSS1_SEM1	PF05160	10 - 67	5e-18	DSS1/SEM1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003878)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44510
fragaria_vesca	FvH4_4g34100 FvH4_4g34100 FvH4_4g34100 FvH4_4g34100 FvH4_4g34100 FvH4_4g34100 FvH4_4g34100 FvH4_4g34100
malus_domestica	MD16G1023100.v1.1
prunus_persica	Prupe.1G329700_v2.0.a1 Prupe.1G329700_v2.0.a1 Prupe.8G002300_v2.0.a1 Prupe.8G002300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0448371 RchiOBHm_Chr4g0443611
rosa_laevigata	RLG00000005910 RLG00000025919
rosa_multiflora	Rmu_sc0001118.1_g000015
rosa_roxburghii	Rroxscaffold_5G00384160 Rroxscaffold_6G00426570
rosa_rugosa	Rorug02G0611800
rosa_samantha	Rh3AG011000 Rh3BG010800 Rh3CG010500 Rh3DG011200 Rh4AG403500 Rh4AG405500 Rh4BG416500 Rh4CG431000 Rh4DG410800 Rh4DG412100
rosa_wichuraiana	Rw3G000860 Rw4G034810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	18
AcuI	CTGAAG	2 cut(s)	48, 206
AfiI	CCNNNNNNNGG	1 cut(s)	40
AgsI	TTSAA	1 cut(s)	71
AluBI	AGCT	1 cut(s)	184
AluI	AGCT	1 cut(s)	184
AlwI	GGATC	1 cut(s)	18
ApeKI	GCWGC	2 cut(s)	127, 181
AsuC2I	CCSGG	1 cut(s)	211
BbsI	GAAGAC	1 cut(s)	36
BbvI	GCAGC	2 cut(s)	139, 193
BcnI	CCSGG	1 cut(s)	211
BfmI	CTRYAG	1 cut(s)	125
BisI	GCNGC	2 cut(s)	128, 182
BlsI	GCNGC	2 cut(s)	129, 183
Bme1390I	CCNGG	1 cut(s)	211
BmrFI	CCNGG	1 cut(s)	211
BpiI	GAAGAC	1 cut(s)	36
BpmI	CTGGAG	1 cut(s)	218
BpuMI	CCSGG	1 cut(s)	211
BsaJI	CCNNGG	1 cut(s)	36
Bsc4I	CCNNNNNNNGG	1 cut(s)	40
Bse1I	ACTGG	1 cut(s)	201
Bse3DI	GCAATG	1 cut(s)	137
BseDI	CCNNGG	1 cut(s)	36
BseGI	GGATG	2 cut(s)	145, 154
BseLI	CCNNNNNNNGG	1 cut(s)	40
BseMI	GCAATG	1 cut(s)	137
BseNI	ACTGG	1 cut(s)	201
BseXI	GCAGC	2 cut(s)	139, 193
BsgI	GTGCAG	1 cut(s)	200
BsiSI	CCGG	1 cut(s)	210
BslFI	GGGAC	1 cut(s)	110
BslI	CCNNNNNNNGG	1 cut(s)	40
BsmFI	GGGAC	1 cut(s)	110
Bsp143I	GATC	1 cut(s)	10
BspMAI	CTGCAG	1 cut(s)	129
BspPI	GGATC	1 cut(s)	18
BsrDI	GCAATG	1 cut(s)	137
BsrI	ACTGG	1 cut(s)	201
BssECI	CCNNGG	1 cut(s)	36
BssMI	GATC	1 cut(s)	10
BssT1I	CCWWGG	1 cut(s)	36
Bst6I	CTCTTC	1 cut(s)	66
BstF5I	GGATG	2 cut(s)	145, 154
BstKTI	GATC	1 cut(s)	13
BstMBI	GATC	1 cut(s)	10
BstSCI	CCNGG	1 cut(s)	209
BstSFI	CTRYAG	1 cut(s)	125
BstV1I	GCAGC	2 cut(s)	139, 193
BstV2I	GAAGAC	1 cut(s)	36
BtsCI	GGATG	2 cut(s)	145, 154
BtsI	GCAGTG	1 cut(s)	122
BtsIMutI	CAGTG	1 cut(s)	122
CviJI	RGCY	1 cut(s)	184
CviKI_1	RGCY	1 cut(s)	184
DpnI	GATC	1 cut(s)	12
DpnII	GATC	1 cut(s)	10
Eam1104I	CTCTTC	1 cut(s)	66
EarI	CTCTTC	1 cut(s)	66
Eco130I	CCWWGG	1 cut(s)	36
Eco57I	CTGAAG	2 cut(s)	48, 206
EcoT14I	CCWWGG	1 cut(s)	36
ErhI	CCWWGG	1 cut(s)	36
FaqI	GGGAC	1 cut(s)	110
Fnu4HI	GCNGC	2 cut(s)	128, 182
FokI	GGATG	2 cut(s)	152, 161
Fsp4HI	GCNGC	2 cut(s)	128, 182
GluI	GCNGC	2 cut(s)	128, 182
GsuI	CTGGAG	1 cut(s)	218
HapII	CCGG	1 cut(s)	210
HpaII	CCGG	1 cut(s)	210
Hpy188I	TCNGA	1 cut(s)	15
Hpy188III	TCNNGA	1 cut(s)	89
HpyAV	CCTTC	2 cut(s)	10, 104
HpyCH4V	TGCA	2 cut(s)	127, 181
Kzo9I	GATC	1 cut(s)	10
LpnPI	CCDG	1 cut(s)	182
Lsp1109I	GCAGC	2 cut(s)	139, 193
MalI	GATC	1 cut(s)	12
MboI	GATC	1 cut(s)	10
MboII	GAAGA	4 cut(s)	41, 83, 119, 199
MnlI	CCTC	2 cut(s)	46, 130
MseI	TTAA	1 cut(s)	78
MspA1I	CMGCKG	1 cut(s)	184
MspI	CCGG	1 cut(s)	210
MspR9I	CCNGG	1 cut(s)	211
NciI	CCSGG	1 cut(s)	211
NdeII	GATC	1 cut(s)	10
PkrI	GCNGC	2 cut(s)	129, 183
PstI	CTGCAG	1 cut(s)	129
PvuII	CAGCTG	1 cut(s)	184
SaqAI	TTAA	1 cut(s)	78
SatI	GCNGC	2 cut(s)	128, 182
Sau3AI	GATC	1 cut(s)	10
ScrFI	CCNGG	1 cut(s)	211
SetI	ASST	3 cut(s)	21, 42, 186
SfcI	CTRYAG	1 cut(s)	125
SgeI	CNNG	6 cut(s)	49, 64, 76, 101, 112, 209
StyD4I	CCNGG	1 cut(s)	209
StyI	CCWWGG	1 cut(s)	36
TaqI	TCGA	1 cut(s)	51
Tru1I	TTAA	1 cut(s)	78
Tru9I	TTAA	1 cut(s)	78
TscAI	CASTG	1 cut(s)	129
TseI	GCWGC	2 cut(s)	127, 181
TspRI	CASTG	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.