Rh4DG410800

Belongs to the BCP1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0003878
Physical Location & Seq
Forward (+)
62255697 .. 62257692
1996 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG410800.1

Sequence Viewer

Length: 978 bp
ATGCCCCGTAGGCCGATGAGGCATCGTGGACTGGTGATATCGCGTCCTCTGACCTTTTCCCAATTTGCTCGTCAATCGGCCGCTAGGGTTGCCTCTGTTTATACTGCCAAGCGTCAAATGCACACCGCAGAAGTCCTTCAAAAATCACCGCCAAACTCCACAGGTAATAAATCAGTAAAGAATAAGTTGAAAGCCAAGAAGGAACAGTCTGAATCTTCTGAAGAAGAAGAGTTCGATGGAAATGTTCAAGTAGATTTTGCATTCTTTGATCCAAAAGCCGATGACTTTCATGGAGTGAAGACCTTGCTGCAGACCTACCTTGATGATAAAGAGTGGGATTTGAGTGGTTTTGTAGACTTAATTTTGGAACAGACCACTGTAGGGTCTGTTGTTAAAATAGAGGATGACGAAGATAATGGAATTTTTGCTCTTGTTACCGCCCTTAACTTGGGGAGATACAAGGACCAGAAATGTATGACAGAGATTAAGGAGTTTCTCCTGAAAGTTTCTCAGGAGGATGTAATAGATGACCTGAGATCACTTTTGGGAAAGGAAGCACATAGTGTTGGTCTGTTGGTCTCTCAACGTGTGACAAATTTACCTCCACAGCTCTTGCCGCCTCTTTATGACGGCCTCTTTAACGAAGTCTCTTGGGCTACTGAAGATGAGCCAACAGAGGAGCTCAAGAATTCCTTTCGATTTAAGTTTTATATAATAGTCACTAAATTTTACAAGCTCAAAACTGCTGGCCAGAAAAGGAAGCATAATGTTAATGAAGAGGCAATAATATATTTAAAGCCAGAAGATGAAATATTTCACAAGCTCAGCTCCTGGTCCTTTGAATTTTCTTTGAACTCTCCGCAGATTGCACCTCATGAGCTAAGAAACTATCAGCAAACGGGGTTAGTCATGTCTGTTAAAGCAGACAAGATCTCTACGTTCCAACAACAGCTGCAATCTTTAATCGAGGAACCTTGA

Protein Analysis

325

Amino Acids

37.24

Weight (kDa)

5.76

Isoelectric Point (pI)

57.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BCCIP PF13862 82 - 272 1.4e-58 BCCIP
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 354
AccII CGCG 1 cut(s) 43
AciI CCGC 6 cut(s) 81, 126, 149, 438, 617, 860
AclWI GGATC 1 cut(s) 263
AcoI YGGCCR 2 cut(s) 78, 748
AcsI RAATTY 5 cut(s) 420, 595, 688, 725, 842
AcuI CTGAAG 2 cut(s) 240, 681
AdeI CACNNNGTG 1 cut(s) 563
AfiI CCNNNNNNNGG 2 cut(s) 381, 448
AflIII ACRYGT 1 cut(s) 586
AgsI TTSAA 5 cut(s) 140, 190, 248, 842, 853
AjnI CCWGG 1 cut(s) 830
AluBI AGCT 7 cut(s) 610, 682, 736, 823, 828, 880, 952
AluI AGCT 7 cut(s) 610, 682, 736, 823, 828, 880, 952
Alw21I GWGCWC 1 cut(s) 684
Alw26I GTCTC 2 cut(s) 583, 652
AlwI GGATC 1 cut(s) 263
AlwNI CAGNNNCTG 1 cut(s) 831
AoxI GGCC 4 cut(s) 11, 78, 631, 748
ApeKI GCWGC 2 cut(s) 307, 952
ApoI RAATTY 5 cut(s) 420, 595, 688, 725, 842
Asp700I GAANNNNTTC 2 cut(s) 135, 813
AspS9I GGNCC 2 cut(s) 463, 834
AsuHPI GGTGA 2 cut(s) 46, 138
AvaII GGWCC 2 cut(s) 463, 834
BalI TGGCCA 1 cut(s) 750
BanII GRGCYC 1 cut(s) 684
BbsI GAAGAC 1 cut(s) 305
Bbv12I GWGCWC 1 cut(s) 684
BbvI GCAGC 2 cut(s) 294, 939
BccI CCATC 1 cut(s) 230
BceAI ACGGC 1 cut(s) 646
BciT130I CCWGG 1 cut(s) 832
BcoDI GTCTC 2 cut(s) 583, 652
BfaI CTAG 1 cut(s) 84
BfmI CTRYAG 2 cut(s) 308, 378
BglI GCCNNNNNGGC 2 cut(s) 10, 19
BglII AGATCT 1 cut(s) 930
BisI GCNGC 4 cut(s) 81, 308, 617, 953
BlpI GCTNAGC 1 cut(s) 824
BlsI GCNGC 4 cut(s) 82, 309, 618, 954
Bme1390I CCNGG 1 cut(s) 832
Bme18I GGWCC 2 cut(s) 463, 834
BmgT120I GGNCC 2 cut(s) 463, 834
BmiI GGNNCC 1 cut(s) 972
BmrFI CCNGG 1 cut(s) 832
BmsI GCATC 1 cut(s) 31
BpiI GAAGAC 1 cut(s) 305
Bpu1102I GCTNAGC 1 cut(s) 824
BpuEI CTTGAG 1 cut(s) 668
BsaI GGTCTC 1 cut(s) 583
Bsc4I CCNNNNNNNGG 2 cut(s) 381, 448
Bse1I ACTGG 1 cut(s) 36
BseBI CCWGG 1 cut(s) 832
BseGI GGATG 2 cut(s) 409, 523
BseLI CCNNNNNNNGG 2 cut(s) 381, 448
BseMII CTCAG 3 cut(s) 524, 524, 838
BseNI ACTGG 1 cut(s) 36
BseRI GAGGAG 1 cut(s) 692
BseX3I CGGCCG 1 cut(s) 78
BseXI GCAGC 2 cut(s) 294, 939
Bsh1236I CGCG 1 cut(s) 43
Bsh1285I CGRYCG 1 cut(s) 81
BshFI GGCC 4 cut(s) 13, 80, 633, 750
BsiEI CGRYCG 1 cut(s) 81
BsiHKAI GWGCWC 1 cut(s) 684
BslI CCNNNNNNNGG 2 cut(s) 381, 448
BsmAI GTCTC 2 cut(s) 583, 652
BsmI GAATGC 1 cut(s) 260
BsnI GGCC 4 cut(s) 13, 80, 633, 750
Bso31I GGTCTC 1 cut(s) 583
Bsp1286I GDGCHC 1 cut(s) 684
Bsp143I GATC 3 cut(s) 268, 536, 930
Bsp1720I GCTNAGC 1 cut(s) 824
BspACI CCGC 6 cut(s) 81, 126, 149, 438, 617, 860
BspANI GGCC 4 cut(s) 13, 80, 633, 750
BspCNI CTCAG 3 cut(s) 523, 525, 837
BspFNI CGCG 1 cut(s) 43
BspHI TCATGA 1 cut(s) 874
BspLI GGNNCC 1 cut(s) 972
BspMAI CTGCAG 1 cut(s) 312
BspPI GGATC 1 cut(s) 263
BspTNI GGTCTC 1 cut(s) 583
BsrI ACTGG 1 cut(s) 36
BssMI GATC 3 cut(s) 268, 536, 930
Bst2UI CCWGG 1 cut(s) 832
Bst4CI ACNGT 2 cut(s) 207, 379
Bst6I CTCTTC 2 cut(s) 222, 771
BstC8I GCNNGC 1 cut(s) 748
BstDEI CTNAG 4 cut(s) 510, 533, 824, 881
BstF5I GGATG 2 cut(s) 409, 523
BstFNI CGCG 1 cut(s) 43
BstKTI GATC 3 cut(s) 271, 539, 933
BstMAI GTCTC 2 cut(s) 583, 652
BstMBI GATC 3 cut(s) 268, 536, 930
BstMCI CGRYCG 1 cut(s) 81
BstMWI GCNNNNNNNGC 5 cut(s) 10, 19, 89, 118, 616
BstNI CCWGG 1 cut(s) 832
BstSCI CCNGG 1 cut(s) 830
BstSFI CTRYAG 2 cut(s) 308, 378
BstUI CGCG 1 cut(s) 43
BstV1I GCAGC 2 cut(s) 294, 939
BstV2I GAAGAC 1 cut(s) 305
BstX2I RGATCY 1 cut(s) 930
BstYI RGATCY 1 cut(s) 930
BstZI CGGCCG 1 cut(s) 78
BsuRI GGCC 4 cut(s) 13, 80, 633, 750
BtsCI GGATG 2 cut(s) 409, 523
BtsIMutI CAGTG 1 cut(s) 375
Cac8I GCNNGC 1 cut(s) 748
CaiI CAGNNNCTG 1 cut(s) 831
CciI TCATGA 1 cut(s) 874
Cfr13I GGNCC 2 cut(s) 463, 834
CseI GACGC 2 cut(s) 32, 101
CspCI CAANNNNNGTGG 2 cut(s) 594, 629
CviAII CATG 3 cut(s) 290, 875, 910
DdeI CTNAG 4 cut(s) 510, 533, 824, 881
DpnI GATC 3 cut(s) 270, 538, 932
DpnII GATC 3 cut(s) 268, 536, 930
DraI TTTAAA 1 cut(s) 795
DraIII CACNNNGTG 1 cut(s) 563
EaeI YGGCCR 2 cut(s) 78, 748
EagI CGGCCG 1 cut(s) 78
Eam1104I CTCTTC 2 cut(s) 222, 771
EarI CTCTTC 2 cut(s) 222, 771
Ecl136II GAGCTC 1 cut(s) 682
EclXI CGGCCG 1 cut(s) 78
Eco24I GRGCYC 1 cut(s) 684
Eco31I GGTCTC 1 cut(s) 583
Eco32I GATATC 1 cut(s) 39
Eco47I GGWCC 2 cut(s) 463, 834
Eco52I CGGCCG 1 cut(s) 78
Eco53kI GAGCTC 1 cut(s) 682
Eco57I CTGAAG 2 cut(s) 240, 681
EcoICRI GAGCTC 1 cut(s) 682
EcoRI GAATTC 1 cut(s) 688
EcoRII CCWGG 1 cut(s) 830
EcoRV GATATC 1 cut(s) 39
EcoT38I GRGCYC 1 cut(s) 684
FaeI CATG 3 cut(s) 293, 878, 913
FalI AAGNNNNNCTT 2 cut(s) 677, 709
FatI CATG 3 cut(s) 289, 874, 909
FblI GTMKAC 1 cut(s) 354
Fnu4HI GCNGC 4 cut(s) 81, 308, 617, 953
FokI GGATG 2 cut(s) 416, 530
FriOI GRGCYC 1 cut(s) 684
Fsp4HI GCNGC 4 cut(s) 81, 308, 617, 953
FspBI CTAG 1 cut(s) 84
GluI GCNGC 4 cut(s) 81, 308, 617, 953
HaeIII GGCC 4 cut(s) 13, 80, 633, 750
HgaI GACGC 2 cut(s) 32, 101
Hin1II CATG 3 cut(s) 293, 878, 913
HinfI GANTC 1 cut(s) 212
HphI GGTGA 2 cut(s) 46, 138
Hpy166II GTNNAC 2 cut(s) 29, 355
Hpy188I TCNGA 3 cut(s) 51, 211, 220
Hpy188III TCNNGA 4 cut(s) 499, 512, 685, 875
Hpy8I GTNNAC 2 cut(s) 29, 355
HpyAV CCTTC 2 cut(s) 146, 193
HpyCH4III ACNGT 2 cut(s) 207, 379
HpyCH4IV ACGT 2 cut(s) 586, 938
HpyCH4V TGCA 5 cut(s) 121, 260, 310, 869, 955
HpyF10VI GCNNNNNNNGC 5 cut(s) 10, 19, 89, 118, 616
HpyF3I CTNAG 4 cut(s) 510, 533, 824, 881
HpySE526I ACGT 2 cut(s) 586, 938
Hsp92II CATG 3 cut(s) 293, 878, 913
Kzo9I GATC 3 cut(s) 268, 536, 930
LmnI GCTCC 2 cut(s) 679, 833
Lsp1109I GCAGC 2 cut(s) 294, 939
LweI GCATC 1 cut(s) 31
MaeI CTAG 1 cut(s) 84
MaeII ACGT 2 cut(s) 586, 938
MaeIII GTNAC 3 cut(s) 433, 589, 718
MalI GATC 3 cut(s) 270, 538, 932
MboI GATC 3 cut(s) 268, 536, 930
MboII GAAGA 9 cut(s) 207, 233, 236, 239, 310, 422, 674, 788, 815
MflI RGATCY 1 cut(s) 930
MhlI GDGCHC 1 cut(s) 684
MlsI TGGCCA 1 cut(s) 750
MluCI AATT 7 cut(s) 62, 360, 420, 595, 688, 725, 842
MluNI TGGCCA 1 cut(s) 750
MmeI TCCRAC 1 cut(s) 967
Mox20I TGGCCA 1 cut(s) 750
MroXI GAANNNNTTC 2 cut(s) 135, 813
MscI TGGCCA 1 cut(s) 750
Msp20I TGGCCA 1 cut(s) 750
MspA1I CMGCKG 1 cut(s) 952
MspR9I CCNGG 1 cut(s) 832
Mva1269I GAATGC 1 cut(s) 260
MvaI CCWGG 1 cut(s) 832
MvnI CGCG 1 cut(s) 43
MwoI GCNNNNNNNGC 5 cut(s) 10, 19, 89, 118, 616
NdeII GATC 3 cut(s) 268, 536, 930
NlaIII CATG 3 cut(s) 293, 878, 913
NlaIV GGNNCC 1 cut(s) 972
NmuCI GTSAC 2 cut(s) 589, 718
PagI TCATGA 1 cut(s) 874
PctI GAATGC 1 cut(s) 260
PdmI GAANNNNTTC 2 cut(s) 135, 813
PfeI GAWTC 1 cut(s) 212
PkrI GCNGC 4 cut(s) 82, 309, 618, 954
Psp124BI GAGCTC 1 cut(s) 684
Psp6I CCWGG 1 cut(s) 830
PspGI CCWGG 1 cut(s) 830
PspN4I GGNNCC 1 cut(s) 972
PspPI GGNCC 2 cut(s) 463, 834
PstI CTGCAG 1 cut(s) 312
PstNI CAGNNNCTG 1 cut(s) 831
PsuI RGATCY 1 cut(s) 930
PvuII CAGCTG 1 cut(s) 952
SacI GAGCTC 1 cut(s) 684
SatI GCNGC 4 cut(s) 81, 308, 617, 953
Sau3AI GATC 3 cut(s) 268, 536, 930
Sau96I GGNCC 2 cut(s) 463, 834
ScrFI CCNGG 1 cut(s) 832
SduI GDGCHC 1 cut(s) 684
SfaNI GCATC 1 cut(s) 31
SfcI CTRYAG 2 cut(s) 308, 378
SinI GGWCC 2 cut(s) 463, 834
SmlI CTYRAG 1 cut(s) 683
SmoI CTYRAG 1 cut(s) 683
Sse9I AATT 7 cut(s) 62, 360, 420, 595, 688, 725, 842
SsiI CCGC 6 cut(s) 81, 126, 149, 438, 617, 860
SspI AATATT 1 cut(s) 813
SspMI CTAG 1 cut(s) 84
SstI GAGCTC 1 cut(s) 684
StyD4I CCNGG 1 cut(s) 830
TaaI ACNGT 2 cut(s) 207, 379
TaiI ACGT 2 cut(s) 589, 941
TaqI TCGA 3 cut(s) 234, 697, 966
TasI AATT 7 cut(s) 62, 360, 420, 595, 688, 725, 842
TauI GCSGC 2 cut(s) 83, 619
TfiI GAWTC 1 cut(s) 212
TscAI CASTG 1 cut(s) 382
TseFI GTSAC 2 cut(s) 589, 718
TseI GCWGC 2 cut(s) 307, 952
Tsp45I GTSAC 2 cut(s) 589, 718
TspDTI ATGAA 3 cut(s) 278, 789, 822
TspRI CASTG 1 cut(s) 382
VpaK11BI GGWCC 2 cut(s) 463, 834
XapI RAATTY 5 cut(s) 420, 595, 688, 725, 842
XmiI GTMKAC 1 cut(s) 354
XmnI GAANNNNTTC 2 cut(s) 135, 813
XspI CTAG 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.