Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001118.1

Orthogroup ID

OG0003878

Physical Location & Seq

Genomic Coordinates Reverse (-)

102437 .. 104437

Gene Structure 2001 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001118.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

atgccccgtaggccgatgaggcatcgtggactggtgatatcgcgtcctctgaccttttcccaatttgctcgtcaatcggccgctagggttgcctctgtttatactgccaagcgtcaaatgcacaccgcagaagtccttcaaaaatcaccgccaaactccacaggtaataaatcagtaaagaataagttgaaagccaagaaggaacagtctgaatcttctgaagaacaagagttcgatggaaatgttcaagtagattttgcattctttgatccaaaagccgatgactttcatggagtgaagaccttgctgcagacctaccttgatgataaagagtgggatttgagtggttttgtagacttaattttggaacagaccactgtagggtctgttgttaaaatagaggatgacgaagataatggaatttttgctcttgttacggccctgaacttggggagatacaaggaccagaaatgtatgacacagattaaggagtttctcctgaaagtttctcaggaggatgtaatagatgacctgagatcacttttgggaaaggaagcacatagtgttggtctgttggtctctcaacgtgtgacaaatttacctccacagctcttgccgcctctttatgacggcctctttaacgaagtctcttgggctactgaagatgagccaacagaggagctcaagaattcgtttcgatttaagttttatataatagtcactaaattttacaagctcaaaactgctggccagaaaaggaagcataatgttaatgaagaggcaataatatatttaaagccagaagatgaaatatttcacaagctcagctcctggtcctttgaattttctttgaactctccgcagattgcacctcatgagctaagaaactatcagcaaacggggttagtcatgtctgttaaagcagacaagatctctacgttccaacaacagctgcaatctttaatcgaggaaccttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BCIP

Protein Analysis

325

Amino Acids

37.23

Weight (kDa)

6.04

Isoelectric Point (pI)

55.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003878)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44510
fragaria_vesca	FvH4_4g34100 FvH4_4g34100 FvH4_4g34100 FvH4_4g34100 FvH4_4g34100 FvH4_4g34100 FvH4_4g34100 FvH4_4g34100
malus_domestica	MD16G1023100.v1.1
prunus_persica	Prupe.1G329700_v2.0.a1 Prupe.1G329700_v2.0.a1 Prupe.8G002300_v2.0.a1 Prupe.8G002300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0448371 RchiOBHm_Chr4g0443611
rosa_laevigata	RLG00000005910 RLG00000025919
rosa_multiflora	Rmu_sc0001118.1_g000015
rosa_roxburghii	Rroxscaffold_5G00384160 Rroxscaffold_6G00426570
rosa_rugosa	Rorug02G0611800
rosa_samantha	Rh3AG011000 Rh3BG010800 Rh3CG010500 Rh3DG011200 Rh4AG403500 Rh4AG405500 Rh4BG416500 Rh4CG431000 Rh4DG410800 Rh4DG412100
rosa_wichuraiana	Rw3G000860 Rw4G034810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	354
AccII	CGCG	1 cut(s)	43
AciI	CCGC	5 cut(s)	81, 126, 149, 617, 860
AclWI	GGATC	1 cut(s)	263
AcoI	YGGCCR	2 cut(s)	78, 748
AcsI	RAATTY	5 cut(s)	420, 595, 688, 725, 842
AcuI	CTGAAG	2 cut(s)	240, 681
AdeI	CACNNNGTG	1 cut(s)	563
AfiI	CCNNNNNNNGG	2 cut(s)	381, 448
AflIII	ACRYGT	1 cut(s)	586
AgsI	TTSAA	5 cut(s)	140, 190, 248, 842, 853
AjnI	CCWGG	1 cut(s)	830
AluBI	AGCT	7 cut(s)	610, 682, 736, 823, 828, 880, 952
AluI	AGCT	7 cut(s)	610, 682, 736, 823, 828, 880, 952
Alw21I	GWGCWC	1 cut(s)	684
Alw26I	GTCTC	2 cut(s)	583, 652
AlwI	GGATC	1 cut(s)	263
AlwNI	CAGNNNCTG	1 cut(s)	831
AoxI	GGCC	5 cut(s)	11, 78, 438, 631, 748
ApeKI	GCWGC	2 cut(s)	307, 952
ApoI	RAATTY	5 cut(s)	420, 595, 688, 725, 842
Asp700I	GAANNNNTTC	2 cut(s)	135, 813
AspS9I	GGNCC	3 cut(s)	439, 463, 834
AsuHPI	GGTGA	2 cut(s)	46, 138
AvaII	GGWCC	2 cut(s)	463, 834
BalI	TGGCCA	1 cut(s)	750
BanII	GRGCYC	1 cut(s)	684
BbsI	GAAGAC	1 cut(s)	305
Bbv12I	GWGCWC	1 cut(s)	684
BbvI	GCAGC	2 cut(s)	294, 939
BccI	CCATC	1 cut(s)	230
BceAI	ACGGC	2 cut(s)	453, 646
BciT130I	CCWGG	1 cut(s)	832
BcoDI	GTCTC	2 cut(s)	583, 652
BfaI	CTAG	1 cut(s)	84
BfmI	CTRYAG	2 cut(s)	308, 378
BglI	GCCNNNNNGGC	2 cut(s)	10, 19
BglII	AGATCT	1 cut(s)	930
BisI	GCNGC	4 cut(s)	81, 308, 617, 953
BlpI	GCTNAGC	1 cut(s)	824
BlsI	GCNGC	4 cut(s)	82, 309, 618, 954
Bme1390I	CCNGG	1 cut(s)	832
Bme18I	GGWCC	2 cut(s)	463, 834
BmgT120I	GGNCC	3 cut(s)	439, 463, 834
BmiI	GGNNCC	1 cut(s)	972
BmrFI	CCNGG	1 cut(s)	832
BmsI	GCATC	1 cut(s)	31
BpiI	GAAGAC	1 cut(s)	305
Bpu1102I	GCTNAGC	1 cut(s)	824
BpuEI	CTTGAG	1 cut(s)	668
BsaI	GGTCTC	1 cut(s)	583
Bsc4I	CCNNNNNNNGG	2 cut(s)	381, 448
Bse1I	ACTGG	1 cut(s)	36
BseBI	CCWGG	1 cut(s)	832
BseGI	GGATG	2 cut(s)	409, 523
BseLI	CCNNNNNNNGG	2 cut(s)	381, 448
BseMII	CTCAG	3 cut(s)	524, 524, 838
BseNI	ACTGG	1 cut(s)	36
BseRI	GAGGAG	1 cut(s)	692
BseX3I	CGGCCG	1 cut(s)	78
BseXI	GCAGC	2 cut(s)	294, 939
Bsh1236I	CGCG	1 cut(s)	43
Bsh1285I	CGRYCG	1 cut(s)	81
BshFI	GGCC	5 cut(s)	13, 80, 440, 633, 750
BsiEI	CGRYCG	1 cut(s)	81
BsiHKAI	GWGCWC	1 cut(s)	684
BslI	CCNNNNNNNGG	2 cut(s)	381, 448
BsmAI	GTCTC	2 cut(s)	583, 652
BsmI	GAATGC	1 cut(s)	260
BsnI	GGCC	5 cut(s)	13, 80, 440, 633, 750
Bso31I	GGTCTC	1 cut(s)	583
Bsp1286I	GDGCHC	1 cut(s)	684
Bsp143I	GATC	3 cut(s)	268, 536, 930
Bsp1720I	GCTNAGC	1 cut(s)	824
BspACI	CCGC	5 cut(s)	81, 126, 149, 617, 860
BspANI	GGCC	5 cut(s)	13, 80, 440, 633, 750
BspCNI	CTCAG	3 cut(s)	523, 525, 837
BspFNI	CGCG	1 cut(s)	43
BspHI	TCATGA	1 cut(s)	874
BspLI	GGNNCC	1 cut(s)	972
BspMAI	CTGCAG	1 cut(s)	312
BspPI	GGATC	1 cut(s)	263
BspTNI	GGTCTC	1 cut(s)	583
BsrI	ACTGG	1 cut(s)	36
BssMI	GATC	3 cut(s)	268, 536, 930
Bst2UI	CCWGG	1 cut(s)	832
Bst4CI	ACNGT	2 cut(s)	207, 379
Bst6I	CTCTTC	1 cut(s)	771
BstC8I	GCNNGC	1 cut(s)	748
BstDEI	CTNAG	4 cut(s)	510, 533, 824, 881
BstF5I	GGATG	2 cut(s)	409, 523
BstFNI	CGCG	1 cut(s)	43
BstKTI	GATC	3 cut(s)	271, 539, 933
BstMAI	GTCTC	2 cut(s)	583, 652
BstMBI	GATC	3 cut(s)	268, 536, 930
BstMCI	CGRYCG	1 cut(s)	81
BstMWI	GCNNNNNNNGC	5 cut(s)	10, 19, 89, 118, 616
BstNI	CCWGG	1 cut(s)	832
BstSCI	CCNGG	1 cut(s)	830
BstSFI	CTRYAG	2 cut(s)	308, 378
BstUI	CGCG	1 cut(s)	43
BstV1I	GCAGC	2 cut(s)	294, 939
BstV2I	GAAGAC	1 cut(s)	305
BstX2I	RGATCY	1 cut(s)	930
BstYI	RGATCY	1 cut(s)	930
BstZI	CGGCCG	1 cut(s)	78
BsuRI	GGCC	5 cut(s)	13, 80, 440, 633, 750
BtsCI	GGATG	2 cut(s)	409, 523
BtsIMutI	CAGTG	1 cut(s)	375
Cac8I	GCNNGC	1 cut(s)	748
CaiI	CAGNNNCTG	1 cut(s)	831
CciI	TCATGA	1 cut(s)	874
Cfr13I	GGNCC	3 cut(s)	439, 463, 834
CseI	GACGC	2 cut(s)	32, 101
CspCI	CAANNNNNGTGG	2 cut(s)	594, 629
CviAII	CATG	3 cut(s)	290, 875, 910
DdeI	CTNAG	4 cut(s)	510, 533, 824, 881
DpnI	GATC	3 cut(s)	270, 538, 932
DpnII	GATC	3 cut(s)	268, 536, 930
DraI	TTTAAA	1 cut(s)	795
DraIII	CACNNNGTG	1 cut(s)	563
EaeI	YGGCCR	2 cut(s)	78, 748
EagI	CGGCCG	1 cut(s)	78
Eam1104I	CTCTTC	1 cut(s)	771
EarI	CTCTTC	1 cut(s)	771
Ecl136II	GAGCTC	1 cut(s)	682
EclXI	CGGCCG	1 cut(s)	78
Eco24I	GRGCYC	1 cut(s)	684
Eco31I	GGTCTC	1 cut(s)	583
Eco32I	GATATC	1 cut(s)	39
Eco47I	GGWCC	2 cut(s)	463, 834
Eco52I	CGGCCG	1 cut(s)	78
Eco53kI	GAGCTC	1 cut(s)	682
Eco57I	CTGAAG	2 cut(s)	240, 681
EcoICRI	GAGCTC	1 cut(s)	682
EcoRI	GAATTC	1 cut(s)	688
EcoRII	CCWGG	1 cut(s)	830
EcoRV	GATATC	1 cut(s)	39
EcoT38I	GRGCYC	1 cut(s)	684
FaeI	CATG	3 cut(s)	293, 878, 913
FatI	CATG	3 cut(s)	289, 874, 909
FblI	GTMKAC	1 cut(s)	354
Fnu4HI	GCNGC	4 cut(s)	81, 308, 617, 953
FokI	GGATG	2 cut(s)	416, 530
FriOI	GRGCYC	1 cut(s)	684
Fsp4HI	GCNGC	4 cut(s)	81, 308, 617, 953
FspBI	CTAG	1 cut(s)	84
GluI	GCNGC	4 cut(s)	81, 308, 617, 953
HaeIII	GGCC	5 cut(s)	13, 80, 440, 633, 750
HgaI	GACGC	2 cut(s)	32, 101
Hin1II	CATG	3 cut(s)	293, 878, 913
HinfI	GANTC	1 cut(s)	212
HphI	GGTGA	2 cut(s)	46, 138
Hpy166II	GTNNAC	2 cut(s)	29, 355
Hpy188I	TCNGA	3 cut(s)	51, 211, 220
Hpy188III	TCNNGA	4 cut(s)	499, 512, 685, 875
Hpy8I	GTNNAC	2 cut(s)	29, 355
HpyAV	CCTTC	2 cut(s)	146, 193
HpyCH4III	ACNGT	2 cut(s)	207, 379
HpyCH4IV	ACGT	2 cut(s)	586, 938
HpyCH4V	TGCA	5 cut(s)	121, 260, 310, 869, 955
HpyF10VI	GCNNNNNNNGC	5 cut(s)	10, 19, 89, 118, 616
HpyF3I	CTNAG	4 cut(s)	510, 533, 824, 881
HpySE526I	ACGT	2 cut(s)	586, 938
Hsp92II	CATG	3 cut(s)	293, 878, 913
Kzo9I	GATC	3 cut(s)	268, 536, 930
LmnI	GCTCC	2 cut(s)	679, 833
Lsp1109I	GCAGC	2 cut(s)	294, 939
LweI	GCATC	1 cut(s)	31
MaeI	CTAG	1 cut(s)	84
MaeII	ACGT	2 cut(s)	586, 938
MaeIII	GTNAC	3 cut(s)	433, 589, 718
MalI	GATC	3 cut(s)	270, 538, 932
MboI	GATC	3 cut(s)	268, 536, 930
MboII	GAAGA	7 cut(s)	207, 233, 310, 422, 674, 788, 815
MflI	RGATCY	1 cut(s)	930
MhlI	GDGCHC	1 cut(s)	684
MlsI	TGGCCA	1 cut(s)	750
MluCI	AATT	7 cut(s)	62, 360, 420, 595, 688, 725, 842
MluNI	TGGCCA	1 cut(s)	750
MmeI	TCCRAC	1 cut(s)	967
Mox20I	TGGCCA	1 cut(s)	750
MroXI	GAANNNNTTC	2 cut(s)	135, 813
MscI	TGGCCA	1 cut(s)	750
MseI	TTAA	9 cut(s)	359, 393, 486, 639, 702, 771, 794, 918, 962
Msp20I	TGGCCA	1 cut(s)	750
MspA1I	CMGCKG	1 cut(s)	952
MspR9I	CCNGG	1 cut(s)	832
Mva1269I	GAATGC	1 cut(s)	260
MvaI	CCWGG	1 cut(s)	832
MvnI	CGCG	1 cut(s)	43
MwoI	GCNNNNNNNGC	5 cut(s)	10, 19, 89, 118, 616
NdeII	GATC	3 cut(s)	268, 536, 930
NlaIII	CATG	3 cut(s)	293, 878, 913
NlaIV	GGNNCC	1 cut(s)	972
NmuCI	GTSAC	2 cut(s)	589, 718
PagI	TCATGA	1 cut(s)	874
PctI	GAATGC	1 cut(s)	260
PdmI	GAANNNNTTC	2 cut(s)	135, 813
PfeI	GAWTC	1 cut(s)	212
PkrI	GCNGC	4 cut(s)	82, 309, 618, 954
Psp124BI	GAGCTC	1 cut(s)	684
Psp6I	CCWGG	1 cut(s)	830
PspGI	CCWGG	1 cut(s)	830
PspN4I	GGNNCC	1 cut(s)	972
PspPI	GGNCC	3 cut(s)	439, 463, 834
PstI	CTGCAG	1 cut(s)	312
PstNI	CAGNNNCTG	1 cut(s)	831
PsuI	RGATCY	1 cut(s)	930
PvuII	CAGCTG	1 cut(s)	952
SacI	GAGCTC	1 cut(s)	684
SaqAI	TTAA	9 cut(s)	359, 393, 486, 639, 702, 771, 794, 918, 962
SatI	GCNGC	4 cut(s)	81, 308, 617, 953
Sau3AI	GATC	3 cut(s)	268, 536, 930
Sau96I	GGNCC	3 cut(s)	439, 463, 834
ScrFI	CCNGG	1 cut(s)	832
SduI	GDGCHC	1 cut(s)	684
SfaNI	GCATC	1 cut(s)	31
SfcI	CTRYAG	2 cut(s)	308, 378
SinI	GGWCC	2 cut(s)	463, 834
SmlI	CTYRAG	1 cut(s)	683
SmoI	CTYRAG	1 cut(s)	683
Sse9I	AATT	7 cut(s)	62, 360, 420, 595, 688, 725, 842
SsiI	CCGC	5 cut(s)	81, 126, 149, 617, 860
SspI	AATATT	1 cut(s)	813
SspMI	CTAG	1 cut(s)	84
SstI	GAGCTC	1 cut(s)	684
StyD4I	CCNGG	1 cut(s)	830
TaaI	ACNGT	2 cut(s)	207, 379
TaiI	ACGT	2 cut(s)	589, 941
TaqI	TCGA	3 cut(s)	234, 697, 966
TasI	AATT	7 cut(s)	62, 360, 420, 595, 688, 725, 842
TauI	GCSGC	2 cut(s)	83, 619
TfiI	GAWTC	1 cut(s)	212
Tru1I	TTAA	9 cut(s)	359, 393, 486, 639, 702, 771, 794, 918, 962
Tru9I	TTAA	9 cut(s)	359, 393, 486, 639, 702, 771, 794, 918, 962
TscAI	CASTG	1 cut(s)	382
TseFI	GTSAC	2 cut(s)	589, 718
TseI	GCWGC	2 cut(s)	307, 952
Tsp45I	GTSAC	2 cut(s)	589, 718
TspDTI	ATGAA	3 cut(s)	278, 789, 822
TspRI	CASTG	1 cut(s)	382
VpaK11BI	GGWCC	2 cut(s)	463, 834
XapI	RAATTY	5 cut(s)	420, 595, 688, 725, 842
XmiI	GTMKAC	1 cut(s)	354
XmnI	GAANNNNTTC	2 cut(s)	135, 813
XspI	CTAG	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.