Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0003878

Physical Location & Seq

Genomic Coordinates Forward (+)

673846 .. 679507

Gene Structure 5662 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG010800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGCCCCGTAGGCCGATGAGGCATCGTGGACTGGTGATATCGCGTCCTCTGACCTTTTCCCAATTTGCTCGTCAATCAGCCGCTAGCGTTGCCTCGGTTTATACCACCAAGCGTCAAATGCACATCGCAGAAGTCCTTCAAAAATCACCACCAAACTCCGCAGGTAATAAAACAGTAAAGAATAAGTTGAAAGCCAAGAATGAACAGTTGGAATCTTCTGAAGAAGAAGAGTTCGATGGAAATGTTCAAGTAGATTTTGCATTCTTTGATCCAAAAGCCGATGACTTTCATGGAGTGAAGACCTTGCTGCAGACCTACCTTGATGATAAAGAGTGGGATTTGAGTGGTTTCGTAGGCTTAATATTGGAACAGACCACTGTAGGGTCTGTTGTTAAAATAGAGGATGACGAAGATAATGGAATTTTTGCTCTTGTTACCGCCCTTAATTTGGGGAGATACAAGGACCAGAAATGTATGACAGAAATTAATGAGTTTCTCCTGAAAGTTTCTCAGAAGGATGTAATAGATGACCTGAGATCACTTTTGGGAAAGGAAGCACATAGTGTTGGTCTGTTGGTCTCTCAACGTGTGACAAATTTACCTCCACAGCTCTTGCCACCTCTTTATGACGGCCTCTTTAACGAAGTCTCTTGGGCTACAGAAGATGAGCCAACAGAGGAGCTCAAGAATTCTTTTCGATTTAAGTTTTATATAATAATCACTAAATTTTACAGGCACAAAACTGCTGACCAGAAAAGGAAGCAGAATGTTAATGAAGAGGCAATAATATATGTAAAGCCAGAAGATGAAATATTGCACAAGGTACTGTTTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BCIP

Protein Analysis

278

Amino Acids

31.84

Weight (kDa)

5.78

Isoelectric Point (pI)

54.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BCCIP	PF13862	82 - 272	4.7e-58	BCCIP

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003878)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44510
fragaria_vesca	FvH4_4g34100 FvH4_4g34100 FvH4_4g34100 FvH4_4g34100 FvH4_4g34100 FvH4_4g34100 FvH4_4g34100 FvH4_4g34100
malus_domestica	MD16G1023100.v1.1
prunus_persica	Prupe.1G329700_v2.0.a1 Prupe.1G329700_v2.0.a1 Prupe.8G002300_v2.0.a1 Prupe.8G002300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0448371 RchiOBHm_Chr4g0443611
rosa_laevigata	RLG00000005910 RLG00000025919
rosa_multiflora	Rmu_sc0001118.1_g000015
rosa_roxburghii	Rroxscaffold_5G00384160 Rroxscaffold_6G00426570
rosa_rugosa	Rorug02G0611800
rosa_samantha	Rh3AG011000 Rh3BG010800 Rh3CG010500 Rh3DG011200 Rh4AG403500 Rh4AG405500 Rh4BG416500 Rh4CG431000 Rh4DG410800 Rh4DG412100
rosa_wichuraiana	Rw3G000860 Rw4G034810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	152
AccII	CGCG	1 cut(s)	43
AciI	CCGC	3 cut(s)	81, 159, 438
AclWI	GGATC	1 cut(s)	263
AcsI	RAATTY	4 cut(s)	420, 595, 688, 725
AcuI	CTGAAG	1 cut(s)	240
AdeI	CACNNNGTG	1 cut(s)	563
AfaI	GTAC	1 cut(s)	825
AfiI	CCNNNNNNNGG	2 cut(s)	381, 448
AflIII	ACRYGT	1 cut(s)	586
AgsI	TTSAA	3 cut(s)	140, 190, 248
AjuI	GAANNNNNNNTTGG	2 cut(s)	191, 223
AluBI	AGCT	2 cut(s)	610, 682
AluI	AGCT	2 cut(s)	610, 682
Alw21I	GWGCWC	1 cut(s)	684
Alw26I	GTCTC	2 cut(s)	583, 652
AlwI	GGATC	1 cut(s)	263
AoxI	GGCC	2 cut(s)	11, 631
ApeKI	GCWGC	1 cut(s)	307
ApoI	RAATTY	4 cut(s)	420, 595, 688, 725
AseI	ATTAAT	1 cut(s)	486
Asp700I	GAANNNNTTC	1 cut(s)	135
AspS9I	GGNCC	1 cut(s)	463
AsuHPI	GGTGA	2 cut(s)	46, 138
AsuNHI	GCTAGC	1 cut(s)	83
AvaII	GGWCC	1 cut(s)	463
BanII	GRGCYC	1 cut(s)	684
BbsI	GAAGAC	1 cut(s)	305
Bbv12I	GWGCWC	1 cut(s)	684
BbvI	GCAGC	1 cut(s)	294
BccI	CCATC	1 cut(s)	230
BceAI	ACGGC	1 cut(s)	646
BcoDI	GTCTC	2 cut(s)	583, 652
BfaI	CTAG	1 cut(s)	84
BfmI	CTRYAG	3 cut(s)	308, 378, 657
BfuAI	ACCTGC	1 cut(s)	152
BglI	GCCNNNNNGGC	2 cut(s)	10, 19
BisI	GCNGC	2 cut(s)	81, 308
BlsI	GCNGC	2 cut(s)	82, 309
Bme18I	GGWCC	1 cut(s)	463
BmgT120I	GGNCC	1 cut(s)	463
BmsI	GCATC	1 cut(s)	31
BmtI	GCTAGC	1 cut(s)	87
BpiI	GAAGAC	1 cut(s)	305
BpuEI	CTTGAG	1 cut(s)	668
BsaI	GGTCTC	1 cut(s)	583
BsaJI	CCNNGG	1 cut(s)	93
Bsc4I	CCNNNNNNNGG	2 cut(s)	381, 448
Bse1I	ACTGG	1 cut(s)	36
BseDI	CCNNGG	1 cut(s)	93
BseGI	GGATG	2 cut(s)	409, 523
BseLI	CCNNNNNNNGG	2 cut(s)	381, 448
BseMII	CTCAG	2 cut(s)	524, 524
BseNI	ACTGG	1 cut(s)	36
BseRI	GAGGAG	1 cut(s)	692
BseXI	GCAGC	1 cut(s)	294
Bsh1236I	CGCG	1 cut(s)	43
BshFI	GGCC	2 cut(s)	13, 633
BsiHKAI	GWGCWC	1 cut(s)	684
BslI	CCNNNNNNNGG	2 cut(s)	381, 448
BsmAI	GTCTC	2 cut(s)	583, 652
BsmI	GAATGC	1 cut(s)	260
BsnI	GGCC	2 cut(s)	13, 633
Bso31I	GGTCTC	1 cut(s)	583
Bsp1286I	GDGCHC	1 cut(s)	684
Bsp143I	GATC	2 cut(s)	268, 536
BspACI	CCGC	3 cut(s)	81, 159, 438
BspANI	GGCC	2 cut(s)	13, 633
BspCNI	CTCAG	2 cut(s)	523, 525
BspFNI	CGCG	1 cut(s)	43
BspMAI	CTGCAG	1 cut(s)	312
BspMI	ACCTGC	1 cut(s)	152
BspOI	GCTAGC	1 cut(s)	87
BspPI	GGATC	1 cut(s)	263
BspTNI	GGTCTC	1 cut(s)	583
BsrI	ACTGG	1 cut(s)	36
BssECI	CCNNGG	1 cut(s)	93
BssMI	GATC	2 cut(s)	268, 536
Bst4CI	ACNGT	4 cut(s)	175, 207, 379, 828
Bst6I	CTCTTC	2 cut(s)	222, 771
BstC8I	GCNNGC	1 cut(s)	85
BstDEI	CTNAG	2 cut(s)	510, 533
BstF5I	GGATG	2 cut(s)	409, 523
BstFNI	CGCG	1 cut(s)	43
BstKTI	GATC	2 cut(s)	271, 539
BstMAI	GTCTC	2 cut(s)	583, 652
BstMBI	GATC	2 cut(s)	268, 536
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 19, 89, 118
BstSFI	CTRYAG	3 cut(s)	308, 378, 657
BstUI	CGCG	1 cut(s)	43
BstV1I	GCAGC	1 cut(s)	294
BstV2I	GAAGAC	1 cut(s)	305
BsuRI	GGCC	2 cut(s)	13, 633
BtgZI	GCGATG	1 cut(s)	109
BtsCI	GGATG	2 cut(s)	409, 523
BtsIMutI	CAGTG	1 cut(s)	375
BveI	ACCTGC	1 cut(s)	152
Cac8I	GCNNGC	1 cut(s)	85
Cfr13I	GGNCC	1 cut(s)	463
CseI	GACGC	2 cut(s)	32, 101
Csp6I	GTAC	1 cut(s)	824
CspCI	CAANNNNNGTGG	2 cut(s)	594, 629
CviAII	CATG	1 cut(s)	290
CviQI	GTAC	1 cut(s)	824
DdeI	CTNAG	2 cut(s)	510, 533
DpnI	GATC	2 cut(s)	270, 538
DpnII	GATC	2 cut(s)	268, 536
DraIII	CACNNNGTG	1 cut(s)	563
Eam1104I	CTCTTC	2 cut(s)	222, 771
EarI	CTCTTC	2 cut(s)	222, 771
Ecl136II	GAGCTC	1 cut(s)	682
Eco24I	GRGCYC	1 cut(s)	684
Eco31I	GGTCTC	1 cut(s)	583
Eco32I	GATATC	1 cut(s)	39
Eco47I	GGWCC	1 cut(s)	463
Eco53kI	GAGCTC	1 cut(s)	682
Eco57I	CTGAAG	1 cut(s)	240
EcoICRI	GAGCTC	1 cut(s)	682
EcoRI	GAATTC	1 cut(s)	688
EcoRV	GATATC	1 cut(s)	39
EcoT38I	GRGCYC	1 cut(s)	684
FaeI	CATG	1 cut(s)	293
FaiI	YATR	9 cut(s)	102, 291, 476, 561, 627, 711, 713, 790, 792
FatI	CATG	1 cut(s)	289
Fnu4HI	GCNGC	2 cut(s)	81, 308
FokI	GGATG	2 cut(s)	416, 530
FriOI	GRGCYC	1 cut(s)	684
Fsp4HI	GCNGC	2 cut(s)	81, 308
FspBI	CTAG	1 cut(s)	84
GluI	GCNGC	2 cut(s)	81, 308
HaeIII	GGCC	2 cut(s)	13, 633
HgaI	GACGC	2 cut(s)	32, 101
Hin1II	CATG	1 cut(s)	293
HinfI	GANTC	1 cut(s)	212
HphI	GGTGA	2 cut(s)	46, 138
Hpy166II	GTNNAC	1 cut(s)	29
Hpy188I	TCNGA	3 cut(s)	51, 220, 513
Hpy188III	TCNNGA	2 cut(s)	499, 685
Hpy8I	GTNNAC	1 cut(s)	29
HpyAV	CCTTC	2 cut(s)	146, 508
HpyCH4III	ACNGT	4 cut(s)	175, 207, 379, 828
HpyCH4IV	ACGT	1 cut(s)	586
HpyCH4V	TGCA	4 cut(s)	121, 260, 310, 817
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 19, 89, 118
HpyF3I	CTNAG	2 cut(s)	510, 533
HpySE526I	ACGT	1 cut(s)	586
Hsp92II	CATG	1 cut(s)	293
Kzo9I	GATC	2 cut(s)	268, 536
LmnI	GCTCC	1 cut(s)	679
LpnPI	CCDG	8 cut(s)	17, 147, 479, 512, 545, 718, 764, 813
Lsp1109I	GCAGC	1 cut(s)	294
LweI	GCATC	1 cut(s)	31
MaeI	CTAG	1 cut(s)	84
MaeII	ACGT	1 cut(s)	586
MaeIII	GTNAC	2 cut(s)	433, 589
MalI	GATC	2 cut(s)	270, 538
MboI	GATC	2 cut(s)	268, 536
MboII	GAAGA	9 cut(s)	207, 233, 236, 239, 310, 422, 674, 788, 815
MhlI	GDGCHC	1 cut(s)	684
MluCI	AATT	7 cut(s)	62, 420, 445, 483, 595, 688, 725
MmeI	TCCRAC	1 cut(s)	189
MnlI	CCTC	9 cut(s)	12, 57, 103, 394, 612, 630, 644, 670, 772
MroXI	GAANNNNTTC	1 cut(s)	135
MseI	TTAA	7 cut(s)	359, 393, 444, 486, 639, 702, 771
Mva1269I	GAATGC	1 cut(s)	260
MvnI	CGCG	1 cut(s)	43
MwoI	GCNNNNNNNGC	4 cut(s)	10, 19, 89, 118
NdeII	GATC	2 cut(s)	268, 536
NheI	GCTAGC	1 cut(s)	83
NlaIII	CATG	1 cut(s)	293
NmuCI	GTSAC	1 cut(s)	589
PctI	GAATGC	1 cut(s)	260
PdmI	GAANNNNTTC	1 cut(s)	135
PfeI	GAWTC	1 cut(s)	212
PkrI	GCNGC	2 cut(s)	82, 309
PshBI	ATTAAT	1 cut(s)	486
Psp124BI	GAGCTC	1 cut(s)	684
PspPI	GGNCC	1 cut(s)	463
PstI	CTGCAG	1 cut(s)	312
RsaI	GTAC	1 cut(s)	825
RsaNI	GTAC	1 cut(s)	824
SacI	GAGCTC	1 cut(s)	684
SaqAI	TTAA	7 cut(s)	359, 393, 444, 486, 639, 702, 771
SatI	GCNGC	2 cut(s)	81, 308
Sau3AI	GATC	2 cut(s)	268, 536
Sau96I	GGNCC	1 cut(s)	463
SduI	GDGCHC	1 cut(s)	684
SfaNI	GCATC	1 cut(s)	31
SfcI	CTRYAG	3 cut(s)	308, 378, 657
SinI	GGWCC	1 cut(s)	463
SmlI	CTYRAG	1 cut(s)	683
SmoI	CTYRAG	1 cut(s)	683
Sse9I	AATT	7 cut(s)	62, 420, 445, 483, 595, 688, 725
SsiI	CCGC	3 cut(s)	81, 159, 438
SspI	AATATT	2 cut(s)	363, 813
SspMI	CTAG	1 cut(s)	84
SstI	GAGCTC	1 cut(s)	684
TaaI	ACNGT	4 cut(s)	175, 207, 379, 828
TaiI	ACGT	1 cut(s)	589
TaqI	TCGA	2 cut(s)	234, 697
TasI	AATT	7 cut(s)	62, 420, 445, 483, 595, 688, 725
TauI	GCSGC	1 cut(s)	83
TfiI	GAWTC	1 cut(s)	212
Tru1I	TTAA	7 cut(s)	359, 393, 444, 486, 639, 702, 771
Tru9I	TTAA	7 cut(s)	359, 393, 444, 486, 639, 702, 771
TscAI	CASTG	1 cut(s)	382
TseFI	GTSAC	1 cut(s)	589
TseI	GCWGC	1 cut(s)	307
Tsp45I	GTSAC	1 cut(s)	589
TspDTI	ATGAA	4 cut(s)	216, 278, 789, 822
TspRI	CASTG	1 cut(s)	382
VpaK11BI	GGWCC	1 cut(s)	463
VspI	ATTAAT	1 cut(s)	486
XapI	RAATTY	4 cut(s)	420, 595, 688, 725
XmnI	GAANNNNTTC	1 cut(s)	135
XspI	CTAG	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.