RchiOBHm_Chr4g0443611

Belongs to the BCP1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0003878
Physical Location & Seq
Forward (+)
64685048 .. 64688559
3512 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41131

Sequence Viewer

Length: 981 bp
ATGCCCCGTAGGCCGATGAGACATCGTGGACTGGTGATATCGCGTCCTCTGACCTTTTCCCAATTTGCTCGTCAATCGGCCGCTAGGGTTGCCTCTGTTTATACTGCCAAGCGTCAAATGCACACCGCAGAAGTCCTTCAAAAATCACCGCCAAACTCCGCAGGTAATAAATCAGTAAAGAATAAGTTGAAAGCCAAGAAGGAACAGTCTGAATCTTCTTCTTCTGAAGAAGAGTTTGATGGAAATGTTCAAGTAGATTTTGCATTCTTTGATCCAAAAGCCGATGACTTTCATGGAGTGAAGACCTTGCTGCAGACCTACCTTGATGATAAAGAGTGGGATTTGAGTGGTTTTGTAGACTTAATTTTGGAACAGACCACTGTAGGGTCTATTGTTAAAATAGAGGATGACGAAGATAATGGAATTTTTGCTCTTGTTACCGCCCTTAACTTGGGGAGATACAAGGACCAGAAATGTATGACAGAGATTAGGGAGTTTCTCCTGAAAGTTTCTCAGGAGGATGTAATAGATGACCTGAGATCACTTTTGGGAAAGGAAGCACATAGTGTTGGTCTGTTGGTCTCTCAACGTGTGACAAATTTACCTCCACAGCTCTTGCCGCCTCTTTATGACGGCCTCTTTAACGAAGTCTCTTGGGCTACTGAAGATGAGCCAACAGAGGAGCTCAAGAATTCCTTTCGATTTAAGTTTTATATAATAGTCACTAAATTTTACAAGCTCAAAACTGCTGGCCAGAAAAGGAAGCATAGTGTTAATGAAGAGGCAATAATATATTTAAAGCCAGAAGATGAAATATTTCACAAGCTCAGCTCCTGGTCCTTTGAATTTTCTTTGAACTCTCCGCAGATTGCACCTCATGAGCTAAGAAACTATCAGCAAACGGGGTTAGTCATGTCTGTTAAAGCAGACAAGATCTCTACGTTCCAACAACAGCTGCAATCTTTAATCGAGGAACCTTGA

Protein Analysis

326

Amino Acids

37.27

Weight (kDa)

5.89

Isoelectric Point (pI)

57.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BCCIP PF13862 83 - 273 4.7e-58 BCCIP
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 152
AccI GTMKAC 1 cut(s) 357
AccII CGCG 1 cut(s) 43
AciI CCGC 7 cut(s) 81, 126, 149, 159, 441, 620, 863
AclWI GGATC 1 cut(s) 266
AcoI YGGCCR 2 cut(s) 78, 751
AcsI RAATTY 5 cut(s) 423, 598, 691, 728, 845
AcuI CTGAAG 2 cut(s) 246, 684
AdeI CACNNNGTG 1 cut(s) 566
AfiI CCNNNNNNNGG 2 cut(s) 384, 451
AflIII ACRYGT 1 cut(s) 589
AgsI TTSAA 5 cut(s) 140, 190, 251, 845, 856
AjnI CCWGG 1 cut(s) 833
AluBI AGCT 7 cut(s) 613, 685, 739, 826, 831, 883, 955
AluI AGCT 7 cut(s) 613, 685, 739, 826, 831, 883, 955
Alw21I GWGCWC 1 cut(s) 687
Alw26I GTCTC 3 cut(s) 13, 586, 655
AlwI GGATC 1 cut(s) 266
AlwNI CAGNNNCTG 1 cut(s) 834
AoxI GGCC 4 cut(s) 11, 78, 634, 751
ApeKI GCWGC 2 cut(s) 310, 955
ApoI RAATTY 5 cut(s) 423, 598, 691, 728, 845
Asp700I GAANNNNTTC 2 cut(s) 135, 816
AspS9I GGNCC 2 cut(s) 466, 837
AsuHPI GGTGA 2 cut(s) 46, 138
AvaII GGWCC 2 cut(s) 466, 837
BalI TGGCCA 1 cut(s) 753
BanII GRGCYC 1 cut(s) 687
BbsI GAAGAC 1 cut(s) 308
Bbv12I GWGCWC 1 cut(s) 687
BbvI GCAGC 2 cut(s) 297, 942
BccI CCATC 1 cut(s) 233
BceAI ACGGC 1 cut(s) 649
BciT130I CCWGG 1 cut(s) 835
BcoDI GTCTC 3 cut(s) 13, 586, 655
BfaI CTAG 1 cut(s) 84
BfmI CTRYAG 2 cut(s) 311, 381
BfuAI ACCTGC 1 cut(s) 152
BglI GCCNNNNNGGC 1 cut(s) 10
BglII AGATCT 1 cut(s) 933
BisI GCNGC 4 cut(s) 81, 311, 620, 956
BlpI GCTNAGC 1 cut(s) 827
BlsI GCNGC 4 cut(s) 82, 312, 621, 957
Bme1390I CCNGG 1 cut(s) 835
Bme18I GGWCC 2 cut(s) 466, 837
BmgT120I GGNCC 2 cut(s) 466, 837
BmiI GGNNCC 1 cut(s) 975
BmrFI CCNGG 1 cut(s) 835
BpiI GAAGAC 1 cut(s) 308
Bpu1102I GCTNAGC 1 cut(s) 827
BpuEI CTTGAG 1 cut(s) 671
BsaI GGTCTC 1 cut(s) 586
Bsc4I CCNNNNNNNGG 2 cut(s) 384, 451
Bse1I ACTGG 1 cut(s) 36
BseBI CCWGG 1 cut(s) 835
BseGI GGATG 2 cut(s) 412, 526
BseLI CCNNNNNNNGG 2 cut(s) 384, 451
BseMII CTCAG 3 cut(s) 527, 527, 841
BseNI ACTGG 1 cut(s) 36
BseRI GAGGAG 1 cut(s) 695
BseX3I CGGCCG 1 cut(s) 78
BseXI GCAGC 2 cut(s) 297, 942
Bsh1236I CGCG 1 cut(s) 43
Bsh1285I CGRYCG 1 cut(s) 81
BshFI GGCC 4 cut(s) 13, 80, 636, 753
BsiEI CGRYCG 1 cut(s) 81
BsiHKAI GWGCWC 1 cut(s) 687
BslI CCNNNNNNNGG 2 cut(s) 384, 451
BsmAI GTCTC 3 cut(s) 13, 586, 655
BsmI GAATGC 1 cut(s) 263
BsnI GGCC 4 cut(s) 13, 80, 636, 753
Bso31I GGTCTC 1 cut(s) 586
Bsp1286I GDGCHC 1 cut(s) 687
Bsp143I GATC 3 cut(s) 271, 539, 933
Bsp1720I GCTNAGC 1 cut(s) 827
BspACI CCGC 7 cut(s) 81, 126, 149, 159, 441, 620, 863
BspANI GGCC 4 cut(s) 13, 80, 636, 753
BspCNI CTCAG 3 cut(s) 526, 528, 840
BspFNI CGCG 1 cut(s) 43
BspHI TCATGA 1 cut(s) 877
BspLI GGNNCC 1 cut(s) 975
BspMAI CTGCAG 1 cut(s) 315
BspMI ACCTGC 1 cut(s) 152
BspPI GGATC 1 cut(s) 266
BspTNI GGTCTC 1 cut(s) 586
BsrI ACTGG 1 cut(s) 36
BssMI GATC 3 cut(s) 271, 539, 933
Bst2UI CCWGG 1 cut(s) 835
Bst4CI ACNGT 2 cut(s) 207, 382
Bst6I CTCTTC 2 cut(s) 225, 774
BstC8I GCNNGC 1 cut(s) 751
BstDEI CTNAG 4 cut(s) 513, 536, 827, 884
BstF5I GGATG 2 cut(s) 412, 526
BstFNI CGCG 1 cut(s) 43
BstKTI GATC 3 cut(s) 274, 542, 936
BstMAI GTCTC 3 cut(s) 13, 586, 655
BstMBI GATC 3 cut(s) 271, 539, 933
BstMCI CGRYCG 1 cut(s) 81
BstMWI GCNNNNNNNGC 4 cut(s) 10, 89, 118, 619
BstNI CCWGG 1 cut(s) 835
BstSCI CCNGG 1 cut(s) 833
BstSFI CTRYAG 2 cut(s) 311, 381
BstUI CGCG 1 cut(s) 43
BstV1I GCAGC 2 cut(s) 297, 942
BstV2I GAAGAC 1 cut(s) 308
BstX2I RGATCY 1 cut(s) 933
BstYI RGATCY 1 cut(s) 933
BstZI CGGCCG 1 cut(s) 78
BsuRI GGCC 4 cut(s) 13, 80, 636, 753
BtsCI GGATG 2 cut(s) 412, 526
BtsIMutI CAGTG 1 cut(s) 378
BveI ACCTGC 1 cut(s) 152
Cac8I GCNNGC 1 cut(s) 751
CaiI CAGNNNCTG 1 cut(s) 834
CciI TCATGA 1 cut(s) 877
Cfr13I GGNCC 2 cut(s) 466, 837
CseI GACGC 2 cut(s) 32, 101
CspCI CAANNNNNGTGG 2 cut(s) 597, 632
CviAII CATG 3 cut(s) 293, 878, 913
DdeI CTNAG 4 cut(s) 513, 536, 827, 884
DpnI GATC 3 cut(s) 273, 541, 935
DpnII GATC 3 cut(s) 271, 539, 933
DraI TTTAAA 1 cut(s) 798
DraIII CACNNNGTG 1 cut(s) 566
EaeI YGGCCR 2 cut(s) 78, 751
EagI CGGCCG 1 cut(s) 78
Eam1104I CTCTTC 2 cut(s) 225, 774
EarI CTCTTC 2 cut(s) 225, 774
Ecl136II GAGCTC 1 cut(s) 685
EclXI CGGCCG 1 cut(s) 78
Eco24I GRGCYC 1 cut(s) 687
Eco31I GGTCTC 1 cut(s) 586
Eco32I GATATC 1 cut(s) 39
Eco47I GGWCC 2 cut(s) 466, 837
Eco52I CGGCCG 1 cut(s) 78
Eco53kI GAGCTC 1 cut(s) 685
Eco57I CTGAAG 2 cut(s) 246, 684
EcoICRI GAGCTC 1 cut(s) 685
EcoRI GAATTC 1 cut(s) 691
EcoRII CCWGG 1 cut(s) 833
EcoRV GATATC 1 cut(s) 39
EcoT38I GRGCYC 1 cut(s) 687
FaeI CATG 3 cut(s) 296, 881, 916
FalI AAGNNNNNCTT 2 cut(s) 680, 712
FatI CATG 3 cut(s) 292, 877, 912
FblI GTMKAC 1 cut(s) 357
Fnu4HI GCNGC 4 cut(s) 81, 311, 620, 956
FokI GGATG 2 cut(s) 419, 533
FriOI GRGCYC 1 cut(s) 687
Fsp4HI GCNGC 4 cut(s) 81, 311, 620, 956
FspBI CTAG 1 cut(s) 84
GluI GCNGC 4 cut(s) 81, 311, 620, 956
HaeIII GGCC 4 cut(s) 13, 80, 636, 753
HgaI GACGC 2 cut(s) 32, 101
Hin1II CATG 3 cut(s) 296, 881, 916
HinfI GANTC 1 cut(s) 212
HphI GGTGA 2 cut(s) 46, 138
Hpy166II GTNNAC 2 cut(s) 29, 358
Hpy188I TCNGA 3 cut(s) 51, 211, 226
Hpy188III TCNNGA 4 cut(s) 502, 515, 688, 878
Hpy8I GTNNAC 2 cut(s) 29, 358
HpyAV CCTTC 2 cut(s) 146, 193
HpyCH4III ACNGT 2 cut(s) 207, 382
HpyCH4IV ACGT 2 cut(s) 589, 941
HpyCH4V TGCA 5 cut(s) 121, 263, 313, 872, 958
HpyF10VI GCNNNNNNNGC 4 cut(s) 10, 89, 118, 619
HpyF3I CTNAG 4 cut(s) 513, 536, 827, 884
HpySE526I ACGT 2 cut(s) 589, 941
Hsp92II CATG 3 cut(s) 296, 881, 916
Kzo9I GATC 3 cut(s) 271, 539, 933
LmnI GCTCC 2 cut(s) 682, 836
Lsp1109I GCAGC 2 cut(s) 297, 942
MaeI CTAG 1 cut(s) 84
MaeII ACGT 2 cut(s) 589, 941
MaeIII GTNAC 3 cut(s) 436, 592, 721
MalI GATC 3 cut(s) 273, 541, 935
MboI GATC 3 cut(s) 271, 539, 933
MflI RGATCY 1 cut(s) 933
MhlI GDGCHC 1 cut(s) 687
MlsI TGGCCA 1 cut(s) 753
MluCI AATT 7 cut(s) 62, 363, 423, 598, 691, 728, 845
MluNI TGGCCA 1 cut(s) 753
MmeI TCCRAC 1 cut(s) 970
Mox20I TGGCCA 1 cut(s) 753
MroXI GAANNNNTTC 2 cut(s) 135, 816
MscI TGGCCA 1 cut(s) 753
MseI TTAA 9 cut(s) 362, 396, 447, 642, 705, 774, 797, 921, 965
Msp20I TGGCCA 1 cut(s) 753
MspA1I CMGCKG 1 cut(s) 955
MspR9I CCNGG 1 cut(s) 835
Mva1269I GAATGC 1 cut(s) 263
MvaI CCWGG 1 cut(s) 835
MvnI CGCG 1 cut(s) 43
MwoI GCNNNNNNNGC 4 cut(s) 10, 89, 118, 619
NdeII GATC 3 cut(s) 271, 539, 933
NlaIII CATG 3 cut(s) 296, 881, 916
NlaIV GGNNCC 1 cut(s) 975
NmuCI GTSAC 2 cut(s) 592, 721
PagI TCATGA 1 cut(s) 877
PctI GAATGC 1 cut(s) 263
PdmI GAANNNNTTC 2 cut(s) 135, 816
PfeI GAWTC 1 cut(s) 212
PkrI GCNGC 4 cut(s) 82, 312, 621, 957
Psp124BI GAGCTC 1 cut(s) 687
Psp6I CCWGG 1 cut(s) 833
PspGI CCWGG 1 cut(s) 833
PspN4I GGNNCC 1 cut(s) 975
PspPI GGNCC 2 cut(s) 466, 837
PstI CTGCAG 1 cut(s) 315
PstNI CAGNNNCTG 1 cut(s) 834
PsuI RGATCY 1 cut(s) 933
PvuII CAGCTG 1 cut(s) 955
SacI GAGCTC 1 cut(s) 687
SaqAI TTAA 9 cut(s) 362, 396, 447, 642, 705, 774, 797, 921, 965
SatI GCNGC 4 cut(s) 81, 311, 620, 956
Sau3AI GATC 3 cut(s) 271, 539, 933
Sau96I GGNCC 2 cut(s) 466, 837
ScrFI CCNGG 1 cut(s) 835
SduI GDGCHC 1 cut(s) 687
SfcI CTRYAG 2 cut(s) 311, 381
SinI GGWCC 2 cut(s) 466, 837
SmlI CTYRAG 1 cut(s) 686
SmoI CTYRAG 1 cut(s) 686
Sse9I AATT 7 cut(s) 62, 363, 423, 598, 691, 728, 845
SsiI CCGC 7 cut(s) 81, 126, 149, 159, 441, 620, 863
SspI AATATT 1 cut(s) 816
SspMI CTAG 1 cut(s) 84
SstI GAGCTC 1 cut(s) 687
StyD4I CCNGG 1 cut(s) 833
TaaI ACNGT 2 cut(s) 207, 382
TaiI ACGT 2 cut(s) 592, 944
TaqI TCGA 2 cut(s) 700, 969
TasI AATT 7 cut(s) 62, 363, 423, 598, 691, 728, 845
TauI GCSGC 2 cut(s) 83, 622
TfiI GAWTC 1 cut(s) 212
Tru1I TTAA 9 cut(s) 362, 396, 447, 642, 705, 774, 797, 921, 965
Tru9I TTAA 9 cut(s) 362, 396, 447, 642, 705, 774, 797, 921, 965
TscAI CASTG 1 cut(s) 385
TseFI GTSAC 2 cut(s) 592, 721
TseI GCWGC 2 cut(s) 310, 955
Tsp45I GTSAC 2 cut(s) 592, 721
TspDTI ATGAA 3 cut(s) 281, 792, 825
TspRI CASTG 1 cut(s) 385
VpaK11BI GGWCC 2 cut(s) 466, 837
XapI RAATTY 5 cut(s) 423, 598, 691, 728, 845
XmiI GTMKAC 1 cut(s) 357
XmnI GAANNNNTTC 2 cut(s) 135, 816
XspI CTAG 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.