RLG00000025919

Belongs to the BCP1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0003878
Physical Location & Seq
Reverse (-)
49176990 .. 49179144
2155 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025919

Sequence Viewer

Length: 969 bp
ATGCCCCGTAGGCTGATAAGGCATCGTGGACTGGTGATATCGCGTCCTCTGACCTTTTCCCAATTTGCTCGTCAATCAGCCGCTAGGGTTGCCTCGGTTTATACCGCCAAGCGTCAAATGCACATCGCAGAAGTCCTTCAAAAACCACCGCCAAACTCCGCAGGTAATAAAACAGTAAAGAATAAGTTGAAAGCCAAGAATGAACAGTTGGAATCTTCTGAAGAAGAAGAGTTCGATGGAAATGTTCAAGTAGATTTTGCATTCTTTGATCCAAAAGCCGATGACTTTCATGGAGTGAAGACCTTGCTGCAGACCTACCTTGATGATAAAGAGTGGGATTTGAGTGGTTTCGTAGGCTTAATATTGGAACAGACCACTGTAGGGTCTGTTGTTAAAATAGAGGATGACGAAGATAATGGAATTTTTGCGCTTGTTACCGCCCTTAACTTGGGGAGATACAAGGACCAGAAATGTATGACAGAGATTAATGAGTTTCTCCTGAAAGTTTCTCAGAAGGATGTAATAGATGACCTGAGATCACTTTTGGGAAAGGAAGCACATAGTGTTGGTCTGTTGGTCTCTCAACGTGTGACAAATTTACCTACACAGCTCTTGCCACCTCTTTATGACGGCCTCTTTAACGAAGTCTCTTGGGCTACAGAAGATGAGCCAACAGAGGAGCTCAAGAATTCTTTTCGATTTAAGTTTTATATAATAATCACTAAATTTTACAGGCACAAAACTGCTGACCAGAAAAGGAAGCAGAATGTTAATGACGAGGCAATAATATATGTAAAGCCAGAAGATGAAATATTTCACAAGCTCAGCTCCTGGTCCTTTGAATTTTCTTTGAACTCTCCGCAGATTGCACCTCATGAGCTAAGAAACTATCAGCAAACGGGGAACCTTGATTCTCATTGCAAGGTCCCATTTTCCTTTTGCGGGTGCCTGAATAATAGAGAGAGCTAG

Protein Analysis

323

Amino Acids

36.91

Weight (kDa)

5.96

Isoelectric Point (pI)

50.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BCCIP PF13862 82 - 272 1.7e-57 BCCIP
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 152
AccB1I GGYRCC 1 cut(s) 945
AccII CGCG 1 cut(s) 43
AciI CCGC 7 cut(s) 81, 105, 149, 159, 438, 860, 942
AclWI GGATC 1 cut(s) 263
AcsI RAATTY 5 cut(s) 420, 595, 688, 725, 842
AcuI CTGAAG 1 cut(s) 240
AdeI CACNNNGTG 1 cut(s) 563
AfiI CCNNNNNNNGG 3 cut(s) 381, 448, 942
AflIII ACRYGT 1 cut(s) 586
AgsI TTSAA 5 cut(s) 140, 190, 248, 842, 853
AjnI CCWGG 1 cut(s) 830
AjuI GAANNNNNNNTTGG 2 cut(s) 191, 223
AluBI AGCT 6 cut(s) 610, 682, 823, 828, 880, 966
AluI AGCT 6 cut(s) 610, 682, 823, 828, 880, 966
Alw21I GWGCWC 1 cut(s) 684
Alw26I GTCTC 2 cut(s) 583, 652
AlwI GGATC 1 cut(s) 263
AlwNI CAGNNNCTG 1 cut(s) 831
AoxI GGCC 1 cut(s) 631
ApeKI GCWGC 1 cut(s) 307
ApoI RAATTY 5 cut(s) 420, 595, 688, 725, 842
AseI ATTAAT 1 cut(s) 486
Asp700I GAANNNNTTC 2 cut(s) 135, 813
AspLEI GCGC 1 cut(s) 430
AspS9I GGNCC 3 cut(s) 463, 834, 925
AsuHPI GGTGA 1 cut(s) 46
AvaII GGWCC 3 cut(s) 463, 834, 925
BanI GGYRCC 1 cut(s) 945
BanII GRGCYC 1 cut(s) 684
BbsI GAAGAC 1 cut(s) 305
Bbv12I GWGCWC 1 cut(s) 684
BbvI GCAGC 1 cut(s) 294
BccI CCATC 1 cut(s) 230
BceAI ACGGC 1 cut(s) 646
BciT130I CCWGG 1 cut(s) 832
BcoDI GTCTC 2 cut(s) 583, 652
BfaI CTAG 2 cut(s) 84, 967
BfmI CTRYAG 3 cut(s) 308, 378, 657
BfuAI ACCTGC 1 cut(s) 152
BglI GCCNNNNNGGC 1 cut(s) 10
BisI GCNGC 2 cut(s) 81, 308
BlpI GCTNAGC 1 cut(s) 824
BlsI GCNGC 2 cut(s) 82, 309
Bme1390I CCNGG 1 cut(s) 832
Bme18I GGWCC 3 cut(s) 463, 834, 925
BmgT120I GGNCC 3 cut(s) 463, 834, 925
BmiI GGNNCC 3 cut(s) 905, 927, 947
BmrFI CCNGG 1 cut(s) 832
BmsI GCATC 1 cut(s) 31
BpiI GAAGAC 1 cut(s) 305
Bpu1102I GCTNAGC 1 cut(s) 824
BpuEI CTTGAG 1 cut(s) 668
BsaI GGTCTC 1 cut(s) 583
BsaJI CCNNGG 1 cut(s) 93
Bsc4I CCNNNNNNNGG 3 cut(s) 381, 448, 942
Bse1I ACTGG 1 cut(s) 36
Bse3DI GCAATG 1 cut(s) 916
BseBI CCWGG 1 cut(s) 832
BseDI CCNNGG 1 cut(s) 93
BseGI GGATG 2 cut(s) 409, 523
BseLI CCNNNNNNNGG 3 cut(s) 381, 448, 942
BseMI GCAATG 1 cut(s) 916
BseMII CTCAG 3 cut(s) 524, 524, 838
BseNI ACTGG 1 cut(s) 36
BseRI GAGGAG 1 cut(s) 692
BseXI GCAGC 1 cut(s) 294
Bsh1236I CGCG 1 cut(s) 43
BshFI GGCC 1 cut(s) 633
BshNI GGYRCC 1 cut(s) 945
BsiHKAI GWGCWC 1 cut(s) 684
BslFI GGGAC 1 cut(s) 911
BslI CCNNNNNNNGG 3 cut(s) 381, 448, 942
BsmAI GTCTC 2 cut(s) 583, 652
BsmFI GGGAC 1 cut(s) 911
BsmI GAATGC 1 cut(s) 260
BsnI GGCC 1 cut(s) 633
Bso31I GGTCTC 1 cut(s) 583
Bsp1286I GDGCHC 1 cut(s) 684
Bsp143I GATC 2 cut(s) 268, 536
Bsp1720I GCTNAGC 1 cut(s) 824
BspACI CCGC 7 cut(s) 81, 105, 149, 159, 438, 860, 942
BspANI GGCC 1 cut(s) 633
BspCNI CTCAG 3 cut(s) 523, 525, 837
BspFNI CGCG 1 cut(s) 43
BspHI TCATGA 1 cut(s) 874
BspLI GGNNCC 3 cut(s) 905, 927, 947
BspMAI CTGCAG 1 cut(s) 312
BspMI ACCTGC 1 cut(s) 152
BspPI GGATC 1 cut(s) 263
BspT107I GGYRCC 1 cut(s) 945
BspTNI GGTCTC 1 cut(s) 583
BsrDI GCAATG 1 cut(s) 916
BsrI ACTGG 1 cut(s) 36
BssECI CCNNGG 1 cut(s) 93
BssMI GATC 2 cut(s) 268, 536
Bst2UI CCWGG 1 cut(s) 832
Bst4CI ACNGT 3 cut(s) 175, 207, 379
Bst6I CTCTTC 1 cut(s) 222
BstDEI CTNAG 4 cut(s) 510, 533, 824, 881
BstF5I GGATG 2 cut(s) 409, 523
BstFNI CGCG 1 cut(s) 43
BstHHI GCGC 1 cut(s) 430
BstKTI GATC 2 cut(s) 271, 539
BstMAI GTCTC 2 cut(s) 583, 652
BstMBI GATC 2 cut(s) 268, 536
BstMWI GCNNNNNNNGC 4 cut(s) 10, 19, 89, 118
BstNI CCWGG 1 cut(s) 832
BstSCI CCNGG 1 cut(s) 830
BstSFI CTRYAG 3 cut(s) 308, 378, 657
BstUI CGCG 1 cut(s) 43
BstV1I GCAGC 1 cut(s) 294
BstV2I GAAGAC 1 cut(s) 305
BsuRI GGCC 1 cut(s) 633
BtgZI GCGATG 1 cut(s) 109
BtsCI GGATG 2 cut(s) 409, 523
BtsIMutI CAGTG 1 cut(s) 375
BveI ACCTGC 1 cut(s) 152
CaiI CAGNNNCTG 1 cut(s) 831
CciI TCATGA 1 cut(s) 874
CfoI GCGC 1 cut(s) 430
Cfr13I GGNCC 3 cut(s) 463, 834, 925
CseI GACGC 2 cut(s) 32, 101
CviAII CATG 2 cut(s) 290, 875
DdeI CTNAG 4 cut(s) 510, 533, 824, 881
DpnI GATC 2 cut(s) 270, 538
DpnII GATC 2 cut(s) 268, 536
DraIII CACNNNGTG 1 cut(s) 563
Eam1104I CTCTTC 1 cut(s) 222
EarI CTCTTC 1 cut(s) 222
Ecl136II GAGCTC 1 cut(s) 682
Eco24I GRGCYC 1 cut(s) 684
Eco31I GGTCTC 1 cut(s) 583
Eco32I GATATC 1 cut(s) 39
Eco47I GGWCC 3 cut(s) 463, 834, 925
Eco53kI GAGCTC 1 cut(s) 682
Eco57I CTGAAG 1 cut(s) 240
EcoICRI GAGCTC 1 cut(s) 682
EcoO109I RGGNCCY 1 cut(s) 925
EcoRI GAATTC 1 cut(s) 688
EcoRII CCWGG 1 cut(s) 830
EcoRV GATATC 1 cut(s) 39
EcoT38I GRGCYC 1 cut(s) 684
FaeI CATG 2 cut(s) 293, 878
FaqI GGGAC 1 cut(s) 911
FatI CATG 2 cut(s) 289, 874
FauI CCCGC 1 cut(s) 935
Fnu4HI GCNGC 2 cut(s) 81, 308
FokI GGATG 2 cut(s) 416, 530
FriOI GRGCYC 1 cut(s) 684
Fsp4HI GCNGC 2 cut(s) 81, 308
FspBI CTAG 2 cut(s) 84, 967
GlaI GCGC 1 cut(s) 429
GluI GCNGC 2 cut(s) 81, 308
HaeIII GGCC 1 cut(s) 633
HgaI GACGC 2 cut(s) 32, 101
HhaI GCGC 1 cut(s) 430
Hin1II CATG 2 cut(s) 293, 878
Hin6I GCGC 1 cut(s) 428
HinP1I GCGC 1 cut(s) 428
HinfI GANTC 2 cut(s) 212, 911
HphI GGTGA 1 cut(s) 46
Hpy166II GTNNAC 1 cut(s) 29
Hpy188I TCNGA 3 cut(s) 51, 220, 513
Hpy188III TCNNGA 3 cut(s) 499, 685, 875
Hpy8I GTNNAC 1 cut(s) 29
HpyAV CCTTC 2 cut(s) 146, 508
HpyCH4III ACNGT 3 cut(s) 175, 207, 379
HpyCH4IV ACGT 1 cut(s) 586
HpyCH4V TGCA 5 cut(s) 121, 260, 310, 869, 921
HpyF10VI GCNNNNNNNGC 4 cut(s) 10, 19, 89, 118
HpyF3I CTNAG 4 cut(s) 510, 533, 824, 881
HpySE526I ACGT 1 cut(s) 586
Hsp92II CATG 2 cut(s) 293, 878
HspAI GCGC 1 cut(s) 428
Kzo9I GATC 2 cut(s) 268, 536
LmnI GCTCC 2 cut(s) 679, 833
Lsp1109I GCAGC 1 cut(s) 294
LweI GCATC 1 cut(s) 31
MaeI CTAG 2 cut(s) 84, 967
MaeII ACGT 1 cut(s) 586
MaeIII GTNAC 2 cut(s) 433, 589
MalI GATC 2 cut(s) 270, 538
MboI GATC 2 cut(s) 268, 536
MboII GAAGA 8 cut(s) 207, 233, 236, 239, 310, 422, 674, 815
MhlI GDGCHC 1 cut(s) 684
MluCI AATT 6 cut(s) 62, 420, 595, 688, 725, 842
MmeI TCCRAC 1 cut(s) 189
MnlI CCTC 8 cut(s) 57, 103, 394, 630, 644, 670, 772, 882
MroXI GAANNNNTTC 2 cut(s) 135, 813
MseI TTAA 7 cut(s) 359, 393, 444, 486, 639, 702, 771
MspR9I CCNGG 1 cut(s) 832
Mva1269I GAATGC 1 cut(s) 260
MvaI CCWGG 1 cut(s) 832
MvnI CGCG 1 cut(s) 43
MwoI GCNNNNNNNGC 4 cut(s) 10, 19, 89, 118
NdeII GATC 2 cut(s) 268, 536
NlaIII CATG 2 cut(s) 293, 878
NlaIV GGNNCC 3 cut(s) 905, 927, 947
NmuCI GTSAC 1 cut(s) 589
PagI TCATGA 1 cut(s) 874
PctI GAATGC 1 cut(s) 260
PdmI GAANNNNTTC 2 cut(s) 135, 813
PfeI GAWTC 2 cut(s) 212, 911
PkrI GCNGC 2 cut(s) 82, 309
PpuMI RGGWCCY 1 cut(s) 925
PshBI ATTAAT 1 cut(s) 486
Psp124BI GAGCTC 1 cut(s) 684
Psp5II RGGWCCY 1 cut(s) 925
Psp6I CCWGG 1 cut(s) 830
PspGI CCWGG 1 cut(s) 830
PspN4I GGNNCC 3 cut(s) 905, 927, 947
PspPI GGNCC 3 cut(s) 463, 834, 925
PspPPI RGGWCCY 1 cut(s) 925
PstI CTGCAG 1 cut(s) 312
PstNI CAGNNNCTG 1 cut(s) 831
SacI GAGCTC 1 cut(s) 684
SaqAI TTAA 7 cut(s) 359, 393, 444, 486, 639, 702, 771
SatI GCNGC 2 cut(s) 81, 308
Sau3AI GATC 2 cut(s) 268, 536
Sau96I GGNCC 3 cut(s) 463, 834, 925
ScrFI CCNGG 1 cut(s) 832
SduI GDGCHC 1 cut(s) 684
SfaNI GCATC 1 cut(s) 31
SfcI CTRYAG 3 cut(s) 308, 378, 657
SinI GGWCC 3 cut(s) 463, 834, 925
SmlI CTYRAG 1 cut(s) 683
SmoI CTYRAG 1 cut(s) 683
Sse9I AATT 6 cut(s) 62, 420, 595, 688, 725, 842
SsiI CCGC 7 cut(s) 81, 105, 149, 159, 438, 860, 942
SspI AATATT 2 cut(s) 363, 813
SspMI CTAG 2 cut(s) 84, 967
SstI GAGCTC 1 cut(s) 684
StyD4I CCNGG 1 cut(s) 830
TaaI ACNGT 3 cut(s) 175, 207, 379
TaiI ACGT 1 cut(s) 589
TaqI TCGA 2 cut(s) 234, 697
TasI AATT 6 cut(s) 62, 420, 595, 688, 725, 842
TauI GCSGC 1 cut(s) 83
TfiI GAWTC 2 cut(s) 212, 911
Tru1I TTAA 7 cut(s) 359, 393, 444, 486, 639, 702, 771
Tru9I TTAA 7 cut(s) 359, 393, 444, 486, 639, 702, 771
TscAI CASTG 1 cut(s) 382
TseFI GTSAC 1 cut(s) 589
TseI GCWGC 1 cut(s) 307
Tsp45I GTSAC 1 cut(s) 589
TspDTI ATGAA 3 cut(s) 216, 278, 822
TspRI CASTG 1 cut(s) 382
VpaK11BI GGWCC 3 cut(s) 463, 834, 925
VspI ATTAAT 1 cut(s) 486
XapI RAATTY 5 cut(s) 420, 595, 688, 725, 842
XmnI GAANNNNTTC 2 cut(s) 135, 813
XspI CTAG 2 cut(s) 84, 967
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.