AT2G44510

Protein BCCIP homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0003878
Physical Location & Seq
Forward (+)
18377048 .. 18379265
2218 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G44510.1

Sequence Viewer

Length: 981 bp
ATGCCTCGAAGACCATCATCAGGAAGAAGAGTGTTAAAGCATCAGCCTTTAACATTTTCACCGTTTATGCGGTTACTTTCCTTTGCTTCAATGGCTAGGCGTGATTTGTCTCATCCTGAAGATTGTCAATGTTCTGATGAAGATATATCTTTTGATGAAAAGCAAAAGATCCCTAATTTACCAAGAAAAGGGAAAGAAGAACAAGTCTCGGACTCGTCTGATGAAGAAGATTCTCAGGAAGATGTCCAAGCAGACTTTGAGTTCTTTGATCCTAAACCTACAGACTTTCATGGTGTTAAGATCCTGTTACAAAACTATCTCGATGACAAGGAGTGGGATTTGAGCAGTTTTGTTGATTGCATATTGGAGCAAACAACTGTAGGAACTGTTGTGAAAGTAGCTGATGATGAGGATGAGTCAGTATTTGCTCTTGTCACTGCTCTTAACATGGCAAGAGATAAGGACAACAAGTGTTTTAGAGAGTTAAAAGAGTTTCTTCGTAAAGTTTGTTCTGAAAAGAATATAGCGAATAATCTAGAAATGCTCTTAGAGAAAAAGGCACAAGATGTTGGTTTATTGGTATCTCAAAGAGTGATGAATCTTCCTCCACAACTTCTTCCTCCACTTTATGATGGATTGTTCGATGAAGTCTCATGGGCAATCGAAGATGAGCCTACAGAAAAGCTTCGAAGATCATTCCGTTTTAAGTCATATCTTCTAGTTACCAAGATTTACAAGCTGAAGAATCCTAAGCAGAGAAAACCTCGACATGGTGAAGAAGACATTGAAGACACAGTATTTCTTAAGCCTGAAGATGAACTCTTTCTCGAGCTTAGCTCTTGGTCCTTCACATTCCCTATGCGCTCACAGCTCGTTACTTCCCAAGAAATGAAGAATTATCAGCTGATGGGTTTAGTGATGGCCGTGGAAGCAAACAAGATTCCTAAATTCAGACAGATGTTGAACTCTCTCATTGATTAA

Protein Analysis

326

Amino Acids

37.95

Weight (kDa)

5.02

Isoelectric Point (pI)

51.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BCCIP PF13862 82 - 275 1.3e-58 BCCIP
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 70
AclWI GGATC 3 cut(s) 163, 263, 295
AcoI YGGCCR 1 cut(s) 921
AcsI RAATTY 1 cut(s) 947
AcuI CTGAAG 3 cut(s) 138, 761, 831
AfiI CCNNNNNNNGG 3 cut(s) 20, 188, 770
AflII CTTAAG 1 cut(s) 803
AgsI TTSAA 3 cut(s) 90, 788, 964
AluBI AGCT 7 cut(s) 401, 685, 739, 832, 837, 871, 904
AluI AGCT 7 cut(s) 401, 685, 739, 832, 837, 871, 904
Alw26I GTCTC 3 cut(s) 114, 211, 655
AlwI GGATC 3 cut(s) 163, 263, 295
Ama87I CYCGRG 1 cut(s) 827
AoxI GGCC 1 cut(s) 921
ApoI RAATTY 1 cut(s) 947
Asp700I GAANNNNTTC 2 cut(s) 684, 822
AspLEI GCGC 1 cut(s) 864
AspS9I GGNCC 1 cut(s) 843
AsuHPI GGTGA 2 cut(s) 51, 785
AsuII TTCGAA 1 cut(s) 688
AvaI CYCGRG 1 cut(s) 827
AvaII GGWCC 1 cut(s) 843
BbsI GAAGAC 3 cut(s) 16, 786, 795
BccI CCATC 4 cut(s) 22, 626, 901, 913
BceAI ACGGC 1 cut(s) 908
BcoDI GTCTC 3 cut(s) 114, 211, 655
BfaI CTAG 3 cut(s) 96, 536, 719
BfmI CTRYAG 3 cut(s) 279, 378, 675
BfrI CTTAAG 1 cut(s) 803
BlpI GCTNAGC 1 cut(s) 833
Bme18I GGWCC 1 cut(s) 843
BmeT110I CYCGRG 1 cut(s) 827
BmgT120I GGNCC 1 cut(s) 843
BmsI GCATC 1 cut(s) 49
BpiI GAAGAC 3 cut(s) 16, 786, 795
BplI GAGNNNNNCTC 4 cut(s) 748, 780, 821, 853
Bpu10I CCTNAGC 1 cut(s) 750
Bpu1102I GCTNAGC 1 cut(s) 833
Bpu14I TTCGAA 1 cut(s) 688
BsaJI CCNNGG 1 cut(s) 924
Bsc4I CCNNNNNNNGG 3 cut(s) 20, 188, 770
BseDI CCNNGG 1 cut(s) 924
BseGI GGATG 2 cut(s) 112, 418
BseLI CCNNNNNNNGG 3 cut(s) 20, 188, 770
BseMII CTCAG 1 cut(s) 248
BshFI GGCC 1 cut(s) 923
BsiHKCI CYCGRG 1 cut(s) 827
BslI CCNNNNNNNGG 3 cut(s) 20, 188, 770
BsmAI GTCTC 3 cut(s) 114, 211, 655
BsnI GGCC 1 cut(s) 923
BsoBI CYCGRG 1 cut(s) 827
Bsp119I TTCGAA 1 cut(s) 688
Bsp143I GATC 4 cut(s) 168, 268, 300, 692
Bsp1720I GCTNAGC 1 cut(s) 833
BspACI CCGC 1 cut(s) 70
BspANI GGCC 1 cut(s) 923
BspCNI CTCAG 1 cut(s) 247
BspPI GGATC 3 cut(s) 163, 263, 295
BspT104I TTCGAA 1 cut(s) 688
BspTI CTTAAG 1 cut(s) 803
BssECI CCNNGG 1 cut(s) 924
BssMI GATC 4 cut(s) 168, 268, 300, 692
Bst4CI ACNGT 4 cut(s) 63, 379, 388, 796
Bst6I CTCTTC 1 cut(s) 22
BstAFI CTTAAG 1 cut(s) 803
BstBI TTCGAA 1 cut(s) 688
BstDEI CTNAG 4 cut(s) 234, 547, 750, 833
BstDSI CCRYGG 1 cut(s) 924
BstF5I GGATG 2 cut(s) 112, 418
BstHHI GCGC 1 cut(s) 864
BstKTI GATC 4 cut(s) 171, 271, 303, 695
BstMAI GTCTC 3 cut(s) 114, 211, 655
BstMBI GATC 4 cut(s) 168, 268, 300, 692
BstMWI GCNNNNNNNGC 3 cut(s) 92, 868, 929
BstSFI CTRYAG 3 cut(s) 279, 378, 675
BstV2I GAAGAC 3 cut(s) 16, 786, 795
BstX2I RGATCY 2 cut(s) 168, 300
BstYI RGATCY 2 cut(s) 168, 300
BsuRI GGCC 1 cut(s) 923
BtgI CCRYGG 1 cut(s) 924
BtsCI GGATG 2 cut(s) 112, 418
BtsI GCAGTG 1 cut(s) 435
BtsIMutI CAGTG 1 cut(s) 435
CfoI GCGC 1 cut(s) 864
Cfr13I GGNCC 1 cut(s) 843
CviAII CATG 4 cut(s) 290, 448, 654, 770
DdeI CTNAG 4 cut(s) 234, 547, 750, 833
DpnI GATC 4 cut(s) 170, 270, 302, 694
DpnII GATC 4 cut(s) 168, 268, 300, 692
EaeI YGGCCR 1 cut(s) 921
Eam1104I CTCTTC 1 cut(s) 22
EarI CTCTTC 1 cut(s) 22
Eco47I GGWCC 1 cut(s) 843
Eco57I CTGAAG 3 cut(s) 138, 761, 831
Eco88I CYCGRG 1 cut(s) 827
FaeI CATG 4 cut(s) 293, 451, 657, 773
FalI AAGNNNNNCTT 2 cut(s) 480, 512
FatI CATG 4 cut(s) 289, 447, 653, 769
FokI GGATG 2 cut(s) 99, 425
FspBI CTAG 3 cut(s) 96, 536, 719
GlaI GCGC 1 cut(s) 863
HaeIII GGCC 1 cut(s) 923
HhaI GCGC 1 cut(s) 864
Hin1II CATG 4 cut(s) 293, 451, 657, 773
Hin6I GCGC 1 cut(s) 862
HinP1I GCGC 1 cut(s) 862
HindIII AAGCTT 1 cut(s) 683
HinfI GANTC 6 cut(s) 212, 230, 416, 598, 745, 940
HphI GGTGA 2 cut(s) 51, 785
Hpy188I TCNGA 5 cut(s) 136, 211, 220, 514, 953
Hpy188III TCNNGA 6 cut(s) 21, 116, 236, 320, 536, 827
HpyAV CCTTC 1 cut(s) 856
HpyCH4III ACNGT 4 cut(s) 63, 379, 388, 796
HpyCH4V TGCA 1 cut(s) 360
HpyF10VI GCNNNNNNNGC 3 cut(s) 92, 868, 929
HpyF3I CTNAG 4 cut(s) 234, 547, 750, 833
Hsp92II CATG 4 cut(s) 293, 451, 657, 773
HspAI GCGC 1 cut(s) 862
Kzo9I GATC 4 cut(s) 168, 268, 300, 692
LmnI GCTCC 1 cut(s) 367
LpnPI CCDG 5 cut(s) 6, 129, 221, 317, 822
LweI GCATC 1 cut(s) 49
MaeI CTAG 3 cut(s) 96, 536, 719
MaeIII GTNAC 5 cut(s) 72, 306, 433, 721, 874
MalI GATC 4 cut(s) 170, 270, 302, 694
MboI GATC 4 cut(s) 168, 268, 300, 692
MflI RGATCY 2 cut(s) 168, 300
MluCI AATT 3 cut(s) 175, 895, 947
MlyI GAGTC 2 cut(s) 206, 425
MnlI CCTC 5 cut(s) 15, 403, 615, 630, 774
MroXI GAANNNNTTC 2 cut(s) 684, 822
MseI TTAA 8 cut(s) 35, 50, 297, 444, 485, 705, 804, 979
MspA1I CMGCKG 1 cut(s) 904
MspCI CTTAAG 1 cut(s) 803
MwoI GCNNNNNNNGC 3 cut(s) 92, 868, 929
NdeII GATC 4 cut(s) 168, 268, 300, 692
NlaIII CATG 4 cut(s) 293, 451, 657, 773
NmuCI GTSAC 1 cut(s) 433
NspV TTCGAA 1 cut(s) 688
PaeR7I CTCGAG 1 cut(s) 827
PdmI GAANNNNTTC 2 cut(s) 684, 822
PfeI GAWTC 4 cut(s) 230, 598, 745, 940
PleI GAGTC 2 cut(s) 206, 424
PpsI GAGTC 2 cut(s) 206, 424
PspPI GGNCC 1 cut(s) 843
PsrI GAACNNNNNNTAC 2 cut(s) 493, 525
PsuI RGATCY 2 cut(s) 168, 300
PvuII CAGCTG 1 cut(s) 904
SaqAI TTAA 8 cut(s) 35, 50, 297, 444, 485, 705, 804, 979
Sau3AI GATC 4 cut(s) 168, 268, 300, 692
Sau96I GGNCC 1 cut(s) 843
SchI GAGTC 2 cut(s) 206, 425
SetI ASST 9 cut(s) 280, 403, 687, 741, 766, 834, 839, 873, 906
SfaNI GCATC 1 cut(s) 49
SfcI CTRYAG 3 cut(s) 279, 378, 675
Sfr274I CTCGAG 1 cut(s) 827
SfuI TTCGAA 1 cut(s) 688
SinI GGWCC 1 cut(s) 843
SlaI CTCGAG 1 cut(s) 827
SmlI CTYRAG 2 cut(s) 803, 827
SmoI CTYRAG 2 cut(s) 803, 827
Sse9I AATT 3 cut(s) 175, 895, 947
SsiI CCGC 1 cut(s) 70
SspMI CTAG 3 cut(s) 96, 536, 719
TaaI ACNGT 4 cut(s) 63, 379, 388, 796
TaqI TCGA 7 cut(s) 7, 321, 642, 663, 688, 766, 828
TasI AATT 3 cut(s) 175, 895, 947
TfiI GAWTC 4 cut(s) 230, 598, 745, 940
Tru1I TTAA 8 cut(s) 35, 50, 297, 444, 485, 705, 804, 979
Tru9I TTAA 8 cut(s) 35, 50, 297, 444, 485, 705, 804, 979
TscAI CASTG 1 cut(s) 442
TseFI GTSAC 1 cut(s) 433
Tsp45I GTSAC 1 cut(s) 433
TspDTI ATGAA 8 cut(s) 153, 171, 237, 278, 611, 660, 831, 905
TspGWI ACGGA 1 cut(s) 689
TspRI CASTG 1 cut(s) 442
Vha464I CTTAAG 1 cut(s) 803
VpaK11BI GGWCC 1 cut(s) 843
XapI RAATTY 1 cut(s) 947
XbaI TCTAGA 1 cut(s) 535
XhoI CTCGAG 1 cut(s) 827
XmnI GAANNNNTTC 2 cut(s) 684, 822
XspI CTAG 3 cut(s) 96, 536, 719
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.