Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0003878

Physical Location & Seq

Genomic Coordinates Forward (+)

63661255 .. 63662830

Gene Structure 1576 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00384160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGCCTCGTAGGCCGATGAGGCATCGTGGACTGGTGATATCGCGTAATAAATCAGTAAAGAATAAGTTGAAAGCCAAGAAGGAACAGTCTGAATCTTCTGAAGAAGAAGAGTTCGATGGAAATGTTCAAGTAGATTTTGCATTCTTTGATCCAAAAGCCAATGACTTTCATGGAGTGAAGACCTTGCTGCAGACCTACCTTGATGATAAAGAGTGGGATTTGAGTGGTTTTGTAGACTTAATTTTGGAACAGACCACTGTAGGGTCTGTTGTTAAAATAGAGGATGATGAAGATAATGGAATTTTTGCTCTTGTTACCGCCCTTAACTTGGGGAGATACAAGGCAAAGATTAAGGAGTTTCTCCTGAAAGTTTCTCAGGAGGATGTAATAGATGACCTGAGATCACTTTTGGGAAAGGAAGCACATAGTGTTGGTCTTTTGGTCTCTCAACGTGTGACAAATTTACCTCCACAGCTCTTGCCACCTCTTTATGACGGCCTCTTTAACGAAGTCTCTTGGGCTACTGAAGATGAGCCAACAGAGGAGCTCAAGAATTCCTTTCGATTTGAGTTTTATATAATAGTCACTAAATTTTACAAGCTCAAAACTGCTGACCAGAAAAGGAAGCATAATGTTAATGAAGAGGCAATAATATATTTAAAGCCAGAAGATGAAATATTTCACAAGCTCAGCTCCTGGTCCTTTGAATTTTCTTTGAACTCTCCGCAGATTGCACCTCATGAGGCAAGTAGTAATATGACTGCCTGCCCTGATTTCTCAGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BCIP

Protein Analysis

261

Amino Acids

29.95

Weight (kDa)

5.13

Isoelectric Point (pI)

49.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BCCIP	PF13862	42 - 227	6e-55	BCCIP

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0003878)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44510
fragaria_vesca	FvH4_4g34100 FvH4_4g34100 FvH4_4g34100 FvH4_4g34100 FvH4_4g34100 FvH4_4g34100 FvH4_4g34100 FvH4_4g34100
malus_domestica	MD16G1023100.v1.1
prunus_persica	Prupe.1G329700_v2.0.a1 Prupe.1G329700_v2.0.a1 Prupe.8G002300_v2.0.a1 Prupe.8G002300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0448371 RchiOBHm_Chr4g0443611
rosa_laevigata	RLG00000005910 RLG00000025919
rosa_multiflora	Rmu_sc0001118.1_g000015
rosa_roxburghii	Rroxscaffold_5G00384160 Rroxscaffold_6G00426570
rosa_rugosa	Rorug02G0611800
rosa_samantha	Rh3AG011000 Rh3BG010800 Rh3CG010500 Rh3DG011200 Rh4AG403500 Rh4AG405500 Rh4BG416500 Rh4CG431000 Rh4DG410800 Rh4DG412100
rosa_wichuraiana	Rw3G000860 Rw4G034810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	234
AccII	CGCG	1 cut(s)	43
AciI	CCGC	2 cut(s)	318, 725
AclWI	GGATC	1 cut(s)	143
AcsI	RAATTY	5 cut(s)	300, 460, 553, 590, 707
AcuI	CTGAAG	2 cut(s)	120, 546
AdeI	CACNNNGTG	1 cut(s)	428
AfiI	CCNNNNNNNGG	2 cut(s)	261, 328
AflIII	ACRYGT	1 cut(s)	451
AgsI	TTSAA	4 cut(s)	70, 128, 707, 718
AjnI	CCWGG	1 cut(s)	695
AluBI	AGCT	5 cut(s)	475, 547, 601, 688, 693
AluI	AGCT	5 cut(s)	475, 547, 601, 688, 693
Alw21I	GWGCWC	1 cut(s)	549
Alw26I	GTCTC	2 cut(s)	448, 517
AlwI	GGATC	1 cut(s)	143
AlwNI	CAGNNNCTG	1 cut(s)	696
AoxI	GGCC	2 cut(s)	11, 496
ApeKI	GCWGC	1 cut(s)	187
ApoI	RAATTY	5 cut(s)	300, 460, 553, 590, 707
Asp700I	GAANNNNTTC	1 cut(s)	678
AspS9I	GGNCC	1 cut(s)	699
AsuHPI	GGTGA	1 cut(s)	46
AvaII	GGWCC	1 cut(s)	699
BanII	GRGCYC	1 cut(s)	549
BbsI	GAAGAC	1 cut(s)	185
Bbv12I	GWGCWC	1 cut(s)	549
BbvI	GCAGC	1 cut(s)	174
BccI	CCATC	1 cut(s)	110
BceAI	ACGGC	1 cut(s)	511
BciT130I	CCWGG	1 cut(s)	697
BcoDI	GTCTC	2 cut(s)	448, 517
BfmI	CTRYAG	2 cut(s)	188, 258
BglI	GCCNNNNNGGC	2 cut(s)	10, 19
BisI	GCNGC	1 cut(s)	188
BlpI	GCTNAGC	1 cut(s)	689
BlsI	GCNGC	1 cut(s)	189
Bme1390I	CCNGG	1 cut(s)	697
Bme18I	GGWCC	1 cut(s)	699
BmgT120I	GGNCC	1 cut(s)	699
BmrFI	CCNGG	1 cut(s)	697
BmsI	GCATC	1 cut(s)	31
BpiI	GAAGAC	1 cut(s)	185
Bpu1102I	GCTNAGC	1 cut(s)	689
BpuEI	CTTGAG	1 cut(s)	533
BsaI	GGTCTC	1 cut(s)	448
Bsc4I	CCNNNNNNNGG	2 cut(s)	261, 328
Bse1I	ACTGG	1 cut(s)	36
BseBI	CCWGG	1 cut(s)	697
BseGI	GGATG	2 cut(s)	289, 388
BseLI	CCNNNNNNNGG	2 cut(s)	261, 328
BseMII	CTCAG	3 cut(s)	389, 389, 703
BseNI	ACTGG	1 cut(s)	36
BseRI	GAGGAG	1 cut(s)	557
BseXI	GCAGC	1 cut(s)	174
Bsh1236I	CGCG	1 cut(s)	43
BshFI	GGCC	2 cut(s)	13, 498
BsiHKAI	GWGCWC	1 cut(s)	549
BslI	CCNNNNNNNGG	2 cut(s)	261, 328
BsmAI	GTCTC	2 cut(s)	448, 517
BsmI	GAATGC	1 cut(s)	140
BsnI	GGCC	2 cut(s)	13, 498
Bso31I	GGTCTC	1 cut(s)	448
Bsp1286I	GDGCHC	1 cut(s)	549
Bsp143I	GATC	2 cut(s)	148, 401
Bsp1720I	GCTNAGC	1 cut(s)	689
BspACI	CCGC	2 cut(s)	318, 725
BspANI	GGCC	2 cut(s)	13, 498
BspCNI	CTCAG	3 cut(s)	388, 390, 702
BspFNI	CGCG	1 cut(s)	43
BspHI	TCATGA	1 cut(s)	739
BspMAI	CTGCAG	1 cut(s)	192
BspPI	GGATC	1 cut(s)	143
BspTNI	GGTCTC	1 cut(s)	448
BsrI	ACTGG	1 cut(s)	36
BssMI	GATC	2 cut(s)	148, 401
Bst2UI	CCWGG	1 cut(s)	697
Bst4CI	ACNGT	2 cut(s)	87, 259
Bst6I	CTCTTC	2 cut(s)	102, 636
BstC8I	GCNNGC	1 cut(s)	766
BstDEI	CTNAG	4 cut(s)	375, 398, 689, 778
BstF5I	GGATG	2 cut(s)	289, 388
BstFNI	CGCG	1 cut(s)	43
BstKTI	GATC	2 cut(s)	151, 404
BstMAI	GTCTC	2 cut(s)	448, 517
BstMBI	GATC	2 cut(s)	148, 401
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 19
BstNI	CCWGG	1 cut(s)	697
BstSCI	CCNGG	1 cut(s)	695
BstSFI	CTRYAG	2 cut(s)	188, 258
BstUI	CGCG	1 cut(s)	43
BstV1I	GCAGC	1 cut(s)	174
BstV2I	GAAGAC	1 cut(s)	185
BsuRI	GGCC	2 cut(s)	13, 498
BtsCI	GGATG	2 cut(s)	289, 388
BtsIMutI	CAGTG	1 cut(s)	255
Cac8I	GCNNGC	1 cut(s)	766
CaiI	CAGNNNCTG	1 cut(s)	696
CciI	TCATGA	1 cut(s)	739
Cfr13I	GGNCC	1 cut(s)	699
CspCI	CAANNNNNGTGG	2 cut(s)	459, 494
CviAII	CATG	2 cut(s)	170, 740
DdeI	CTNAG	4 cut(s)	375, 398, 689, 778
DpnI	GATC	2 cut(s)	150, 403
DpnII	GATC	2 cut(s)	148, 401
DraI	TTTAAA	1 cut(s)	660
DraIII	CACNNNGTG	1 cut(s)	428
Eam1104I	CTCTTC	2 cut(s)	102, 636
EarI	CTCTTC	2 cut(s)	102, 636
Ecl136II	GAGCTC	1 cut(s)	547
Eco24I	GRGCYC	1 cut(s)	549
Eco31I	GGTCTC	1 cut(s)	448
Eco32I	GATATC	1 cut(s)	39
Eco47I	GGWCC	1 cut(s)	699
Eco53kI	GAGCTC	1 cut(s)	547
Eco57I	CTGAAG	2 cut(s)	120, 546
EcoICRI	GAGCTC	1 cut(s)	547
EcoRI	GAATTC	1 cut(s)	553
EcoRII	CCWGG	1 cut(s)	695
EcoRV	GATATC	1 cut(s)	39
EcoT38I	GRGCYC	1 cut(s)	549
FaeI	CATG	2 cut(s)	173, 743
FalI	AAGNNNNNCTT	2 cut(s)	542, 574
FatI	CATG	2 cut(s)	169, 739
FblI	GTMKAC	1 cut(s)	234
Fnu4HI	GCNGC	1 cut(s)	188
FokI	GGATG	2 cut(s)	296, 395
FriOI	GRGCYC	1 cut(s)	549
Fsp4HI	GCNGC	1 cut(s)	188
GluI	GCNGC	1 cut(s)	188
HaeIII	GGCC	2 cut(s)	13, 498
Hin1II	CATG	2 cut(s)	173, 743
HinfI	GANTC	1 cut(s)	92
HphI	GGTGA	1 cut(s)	46
Hpy166II	GTNNAC	2 cut(s)	29, 235
Hpy188I	TCNGA	2 cut(s)	91, 100
Hpy188III	TCNNGA	4 cut(s)	364, 377, 550, 740
Hpy8I	GTNNAC	2 cut(s)	29, 235
HpyAV	CCTTC	1 cut(s)	73
HpyCH4III	ACNGT	2 cut(s)	87, 259
HpyCH4IV	ACGT	1 cut(s)	451
HpyCH4V	TGCA	3 cut(s)	140, 190, 734
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 19
HpyF3I	CTNAG	4 cut(s)	375, 398, 689, 778
HpySE526I	ACGT	1 cut(s)	451
Hsp92II	CATG	2 cut(s)	173, 743
Kzo9I	GATC	2 cut(s)	148, 401
LmnI	GCTCC	2 cut(s)	544, 698
LpnPI	CCDG	9 cut(s)	17, 362, 377, 410, 629, 678, 682, 709, 778
Lsp1109I	GCAGC	1 cut(s)	174
LweI	GCATC	1 cut(s)	31
MaeII	ACGT	1 cut(s)	451
MaeIII	GTNAC	3 cut(s)	313, 454, 583
MalI	GATC	2 cut(s)	150, 403
MboI	GATC	2 cut(s)	148, 401
MboII	GAAGA	9 cut(s)	87, 113, 116, 119, 190, 302, 539, 653, 680
MhlI	GDGCHC	1 cut(s)	549
MluCI	AATT	6 cut(s)	240, 300, 460, 553, 590, 707
MroXI	GAANNNNTTC	1 cut(s)	678
MseI	TTAA	7 cut(s)	239, 273, 324, 351, 504, 636, 659
MspR9I	CCNGG	1 cut(s)	697
Mva1269I	GAATGC	1 cut(s)	140
MvaI	CCWGG	1 cut(s)	697
MvnI	CGCG	1 cut(s)	43
MwoI	GCNNNNNNNGC	2 cut(s)	10, 19
NdeII	GATC	2 cut(s)	148, 401
NlaIII	CATG	2 cut(s)	173, 743
NmuCI	GTSAC	2 cut(s)	454, 583
PagI	TCATGA	1 cut(s)	739
PctI	GAATGC	1 cut(s)	140
PdmI	GAANNNNTTC	1 cut(s)	678
PfeI	GAWTC	1 cut(s)	92
PkrI	GCNGC	1 cut(s)	189
Psp124BI	GAGCTC	1 cut(s)	549
Psp6I	CCWGG	1 cut(s)	695
PspGI	CCWGG	1 cut(s)	695
PspPI	GGNCC	1 cut(s)	699
PstI	CTGCAG	1 cut(s)	192
PstNI	CAGNNNCTG	1 cut(s)	696
SacI	GAGCTC	1 cut(s)	549
SaqAI	TTAA	7 cut(s)	239, 273, 324, 351, 504, 636, 659
SatI	GCNGC	1 cut(s)	188
Sau3AI	GATC	2 cut(s)	148, 401
Sau96I	GGNCC	1 cut(s)	699
ScrFI	CCNGG	1 cut(s)	697
SduI	GDGCHC	1 cut(s)	549
SfaNI	GCATC	1 cut(s)	31
SfcI	CTRYAG	2 cut(s)	188, 258
SinI	GGWCC	1 cut(s)	699
SmlI	CTYRAG	1 cut(s)	548
SmoI	CTYRAG	1 cut(s)	548
Sse9I	AATT	6 cut(s)	240, 300, 460, 553, 590, 707
SsiI	CCGC	2 cut(s)	318, 725
SspI	AATATT	1 cut(s)	678
SstI	GAGCTC	1 cut(s)	549
StyD4I	CCNGG	1 cut(s)	695
TaaI	ACNGT	2 cut(s)	87, 259
TaiI	ACGT	1 cut(s)	454
TaqI	TCGA	2 cut(s)	114, 562
TasI	AATT	6 cut(s)	240, 300, 460, 553, 590, 707
TfiI	GAWTC	1 cut(s)	92
Tru1I	TTAA	7 cut(s)	239, 273, 324, 351, 504, 636, 659
Tru9I	TTAA	7 cut(s)	239, 273, 324, 351, 504, 636, 659
TscAI	CASTG	1 cut(s)	262
TseFI	GTSAC	2 cut(s)	454, 583
TseI	GCWGC	1 cut(s)	187
Tsp45I	GTSAC	2 cut(s)	454, 583
TspDTI	ATGAA	4 cut(s)	158, 303, 654, 687
TspRI	CASTG	1 cut(s)	262
VpaK11BI	GGWCC	1 cut(s)	699
XapI	RAATTY	5 cut(s)	300, 460, 553, 590, 707
XmiI	GTMKAC	1 cut(s)	234
XmnI	GAANNNNTTC	1 cut(s)	678

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.