Rroxscaffold_6G00426570

Belongs to the BCP1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0003878
Physical Location & Seq
Forward (+)
47267010 .. 47272330
5321 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00426570.1

Sequence Viewer

Length: 978 bp
ATGCCCCGTAGGCCGATGAGGCATCGTGGACTGGTGATATCGCGTCCTCTGACCTTTTCCCAATTTGCTCGTCAATCAGCTGCTAGGGTTGCCTCTGTTTATACCACCAAGCGTCAAATGCACGTCGCAGAAGTCCGTCAAAAATCACCACCAAACTCCGCAGGTAATAAAACAGTGAAGAATAAGTTGAAAGCCAAGAATGAACAGTTGGAATCTTCTGAAGAAGAAGAGTTCGATGGAAATGTTCAAGTAGATTTGGCATTCTTTGATCCAAAAGCTGATGACTTTCATGGAGTGAAGACCTTGTTGCAGACCTACCTTGATGATAAAGAGTGGGATTTGAGTGGTTTCGTAGGCTTAATATTGGAACAGACCACTGTAGGGTCTGTTGTTAAAATAGAGGATGACGAAGATAATGGAATTTTTGCTCTTGTTACCGCCCTTAACTTGGGGAGATACAAGGACCAGAAATGTATGACAGAGATTAATGAGTTTCTCCTGAAAGTTTCTCAGAAGCATGTAATAGATGACCTGAGATCACTTTTGGGAAAGGAAGCACATAGTGTTGGTCTGTTGGTCTCTCAACGTGTGACAAATTTACCTCCACAGCTCTTGCCACCTCTTTATGACGGCCTCTTTAACGAAGTCTCTTGGGCTACAGAAGATGAGCCAACTGAGGAGCTCAAGAATTCTTTTCGATTTAAGTTTTATATAATAATCACTAAATTTTACAGGCACAAAACTGCTGACCAGAAAAGGAAGCAGAATGTTAATGAAGAGGCAATAATATATGTAAAGCCAGAAGATGAAATATTTCACAAGCTCAGCTCCTGGTCCTTTGAATTTTCTTTGAACTCTCCGCAGATTGCACCTCATGAGCTAAGAAAGTATCAGCAAACGGGGTTAGTCATGGCTGTAAAAGCAGACAAGGTCTCTACATTCCAACAACAGCTGCAATCTTTAATCGAGGAACCTTGA

Protein Analysis

325

Amino Acids

37.3

Weight (kDa)

6.28

Isoelectric Point (pI)

56.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BCCIP PF13862 82 - 272 5.7e-57 BCCIP
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 152
AccII CGCG 1 cut(s) 43
AciI CCGC 3 cut(s) 159, 438, 860
AclWI GGATC 1 cut(s) 263
AcsI RAATTY 5 cut(s) 420, 595, 688, 725, 842
AcuI CTGAAG 1 cut(s) 240
AdeI CACNNNGTG 1 cut(s) 563
AfiI CCNNNNNNNGG 2 cut(s) 381, 448
AflIII ACRYGT 1 cut(s) 586
AgsI TTSAA 4 cut(s) 190, 248, 842, 853
AjiI CACGTC 1 cut(s) 124
AjnI CCWGG 1 cut(s) 830
AjuI GAANNNNNNNTTGG 2 cut(s) 191, 223
AluBI AGCT 8 cut(s) 80, 278, 610, 682, 823, 828, 880, 952
AluI AGCT 8 cut(s) 80, 278, 610, 682, 823, 828, 880, 952
Alw21I GWGCWC 1 cut(s) 684
Alw26I GTCTC 3 cut(s) 583, 652, 937
AlwI GGATC 1 cut(s) 263
AlwNI CAGNNNCTG 1 cut(s) 831
AoxI GGCC 2 cut(s) 11, 631
ApeKI GCWGC 2 cut(s) 80, 952
ApoI RAATTY 5 cut(s) 420, 595, 688, 725, 842
AseI ATTAAT 1 cut(s) 486
Asp700I GAANNNNTTC 1 cut(s) 813
AspS9I GGNCC 2 cut(s) 463, 834
AsuHPI GGTGA 2 cut(s) 46, 138
AvaII GGWCC 2 cut(s) 463, 834
BanII GRGCYC 1 cut(s) 684
BbsI GAAGAC 1 cut(s) 305
Bbv12I GWGCWC 1 cut(s) 684
BbvI GCAGC 2 cut(s) 67, 939
BccI CCATC 1 cut(s) 230
BceAI ACGGC 1 cut(s) 646
BciT130I CCWGG 1 cut(s) 832
BcoDI GTCTC 3 cut(s) 583, 652, 937
BfaI CTAG 1 cut(s) 84
BfmI CTRYAG 2 cut(s) 378, 657
BfuAI ACCTGC 1 cut(s) 152
BglI GCCNNNNNGGC 2 cut(s) 10, 19
BisI GCNGC 2 cut(s) 81, 953
BlpI GCTNAGC 1 cut(s) 824
BlsI GCNGC 2 cut(s) 82, 954
Bme1390I CCNGG 1 cut(s) 832
Bme18I GGWCC 2 cut(s) 463, 834
BmgBI CACGTC 1 cut(s) 124
BmgT120I GGNCC 2 cut(s) 463, 834
BmiI GGNNCC 1 cut(s) 972
BmrFI CCNGG 1 cut(s) 832
BmsI GCATC 1 cut(s) 31
BpiI GAAGAC 1 cut(s) 305
Bpu1102I GCTNAGC 1 cut(s) 824
BpuEI CTTGAG 1 cut(s) 668
BsaI GGTCTC 2 cut(s) 583, 937
Bsc4I CCNNNNNNNGG 2 cut(s) 381, 448
Bse1I ACTGG 1 cut(s) 36
BseBI CCWGG 1 cut(s) 832
BseGI GGATG 1 cut(s) 409
BseLI CCNNNNNNNGG 2 cut(s) 381, 448
BseMII CTCAG 4 cut(s) 524, 524, 666, 838
BseNI ACTGG 1 cut(s) 36
BseRI GAGGAG 1 cut(s) 692
BseXI GCAGC 2 cut(s) 67, 939
Bsh1236I CGCG 1 cut(s) 43
BshFI GGCC 2 cut(s) 13, 633
BsiHKAI GWGCWC 1 cut(s) 684
BslI CCNNNNNNNGG 2 cut(s) 381, 448
BsmAI GTCTC 3 cut(s) 583, 652, 937
BsmI GAATGC 1 cut(s) 260
BsnI GGCC 2 cut(s) 13, 633
Bso31I GGTCTC 2 cut(s) 583, 937
Bsp1286I GDGCHC 1 cut(s) 684
Bsp143I GATC 2 cut(s) 268, 536
Bsp1720I GCTNAGC 1 cut(s) 824
BspACI CCGC 3 cut(s) 159, 438, 860
BspANI GGCC 2 cut(s) 13, 633
BspCNI CTCAG 4 cut(s) 523, 525, 667, 837
BspFNI CGCG 1 cut(s) 43
BspHI TCATGA 1 cut(s) 874
BspLI GGNNCC 1 cut(s) 972
BspMI ACCTGC 1 cut(s) 152
BspPI GGATC 1 cut(s) 263
BspTNI GGTCTC 2 cut(s) 583, 937
BsrI ACTGG 1 cut(s) 36
BssMI GATC 2 cut(s) 268, 536
Bst2UI CCWGG 1 cut(s) 832
Bst4CI ACNGT 3 cut(s) 175, 207, 379
Bst6I CTCTTC 2 cut(s) 222, 771
BstDEI CTNAG 5 cut(s) 510, 533, 675, 824, 881
BstF5I GGATG 1 cut(s) 409
BstFNI CGCG 1 cut(s) 43
BstKTI GATC 2 cut(s) 271, 539
BstMAI GTCTC 3 cut(s) 583, 652, 937
BstMBI GATC 2 cut(s) 268, 536
BstMWI GCNNNNNNNGC 5 cut(s) 10, 19, 89, 118, 920
BstNI CCWGG 1 cut(s) 832
BstNSI RCATGY 1 cut(s) 521
BstSCI CCNGG 1 cut(s) 830
BstSFI CTRYAG 2 cut(s) 378, 657
BstUI CGCG 1 cut(s) 43
BstV1I GCAGC 2 cut(s) 67, 939
BstV2I GAAGAC 1 cut(s) 305
BsuRI GGCC 2 cut(s) 13, 633
BtrI CACGTC 1 cut(s) 124
BtsCI GGATG 1 cut(s) 409
BtsIMutI CAGTG 2 cut(s) 180, 375
BveI ACCTGC 1 cut(s) 152
CaiI CAGNNNCTG 1 cut(s) 831
CciI TCATGA 1 cut(s) 874
Cfr13I GGNCC 2 cut(s) 463, 834
CseI GACGC 2 cut(s) 32, 101
CspCI CAANNNNNGTGG 2 cut(s) 594, 629
CviAII CATG 4 cut(s) 290, 518, 875, 910
DdeI CTNAG 5 cut(s) 510, 533, 675, 824, 881
DpnI GATC 2 cut(s) 270, 538
DpnII GATC 2 cut(s) 268, 536
DraIII CACNNNGTG 1 cut(s) 563
Eam1104I CTCTTC 2 cut(s) 222, 771
EarI CTCTTC 2 cut(s) 222, 771
Ecl136II GAGCTC 1 cut(s) 682
Eco24I GRGCYC 1 cut(s) 684
Eco31I GGTCTC 2 cut(s) 583, 937
Eco32I GATATC 1 cut(s) 39
Eco47I GGWCC 2 cut(s) 463, 834
Eco53kI GAGCTC 1 cut(s) 682
Eco57I CTGAAG 1 cut(s) 240
EcoICRI GAGCTC 1 cut(s) 682
EcoRI GAATTC 1 cut(s) 688
EcoRII CCWGG 1 cut(s) 830
EcoRV GATATC 1 cut(s) 39
EcoT38I GRGCYC 1 cut(s) 684
FaeI CATG 4 cut(s) 293, 521, 878, 913
FatI CATG 4 cut(s) 289, 517, 874, 909
Fnu4HI GCNGC 2 cut(s) 81, 953
FokI GGATG 1 cut(s) 416
FriOI GRGCYC 1 cut(s) 684
Fsp4HI GCNGC 2 cut(s) 81, 953
FspBI CTAG 1 cut(s) 84
GluI GCNGC 2 cut(s) 81, 953
HaeIII GGCC 2 cut(s) 13, 633
HgaI GACGC 2 cut(s) 32, 101
Hin1II CATG 4 cut(s) 293, 521, 878, 913
HinfI GANTC 1 cut(s) 212
HphI GGTGA 2 cut(s) 46, 138
Hpy166II GTNNAC 1 cut(s) 29
Hpy188I TCNGA 3 cut(s) 51, 220, 513
Hpy188III TCNNGA 3 cut(s) 499, 685, 875
Hpy8I GTNNAC 1 cut(s) 29
Hpy99I CGWCG 1 cut(s) 128
HpyCH4III ACNGT 3 cut(s) 175, 207, 379
HpyCH4IV ACGT 2 cut(s) 123, 586
HpyCH4V TGCA 4 cut(s) 121, 310, 869, 955
HpyF10VI GCNNNNNNNGC 5 cut(s) 10, 19, 89, 118, 920
HpyF3I CTNAG 5 cut(s) 510, 533, 675, 824, 881
HpySE526I ACGT 2 cut(s) 123, 586
Hsp92II CATG 4 cut(s) 293, 521, 878, 913
Kzo9I GATC 2 cut(s) 268, 536
LmnI GCTCC 2 cut(s) 679, 833
Lsp1109I GCAGC 2 cut(s) 67, 939
LweI GCATC 1 cut(s) 31
MaeI CTAG 1 cut(s) 84
MaeII ACGT 2 cut(s) 123, 586
MaeIII GTNAC 2 cut(s) 433, 589
MalI GATC 2 cut(s) 270, 538
MboI GATC 2 cut(s) 268, 536
MhlI GDGCHC 1 cut(s) 684
MluCI AATT 6 cut(s) 62, 420, 595, 688, 725, 842
MmeI TCCRAC 2 cut(s) 189, 967
MroXI GAANNNNTTC 1 cut(s) 813
MseI TTAA 8 cut(s) 359, 393, 444, 486, 639, 702, 771, 962
MspA1I CMGCKG 2 cut(s) 80, 952
MspR9I CCNGG 1 cut(s) 832
Mva1269I GAATGC 1 cut(s) 260
MvaI CCWGG 1 cut(s) 832
MvnI CGCG 1 cut(s) 43
MwoI GCNNNNNNNGC 5 cut(s) 10, 19, 89, 118, 920
NdeII GATC 2 cut(s) 268, 536
NlaIII CATG 4 cut(s) 293, 521, 878, 913
NlaIV GGNNCC 1 cut(s) 972
NmuCI GTSAC 1 cut(s) 589
NspI RCATGY 1 cut(s) 521
PagI TCATGA 1 cut(s) 874
PctI GAATGC 1 cut(s) 260
PdmI GAANNNNTTC 1 cut(s) 813
PfeI GAWTC 1 cut(s) 212
PflFI GACNNNGTC 1 cut(s) 929
PkrI GCNGC 2 cut(s) 82, 954
PshBI ATTAAT 1 cut(s) 486
Psp124BI GAGCTC 1 cut(s) 684
Psp6I CCWGG 1 cut(s) 830
PspGI CCWGG 1 cut(s) 830
PspN4I GGNNCC 1 cut(s) 972
PspPI GGNCC 2 cut(s) 463, 834
PstNI CAGNNNCTG 1 cut(s) 831
PsyI GACNNNGTC 1 cut(s) 929
PvuII CAGCTG 2 cut(s) 80, 952
SacI GAGCTC 1 cut(s) 684
SaqAI TTAA 8 cut(s) 359, 393, 444, 486, 639, 702, 771, 962
SatI GCNGC 2 cut(s) 81, 953
Sau3AI GATC 2 cut(s) 268, 536
Sau96I GGNCC 2 cut(s) 463, 834
ScrFI CCNGG 1 cut(s) 832
SduI GDGCHC 1 cut(s) 684
SfaNI GCATC 1 cut(s) 31
SfcI CTRYAG 2 cut(s) 378, 657
SinI GGWCC 2 cut(s) 463, 834
SmlI CTYRAG 1 cut(s) 683
SmoI CTYRAG 1 cut(s) 683
Sse9I AATT 6 cut(s) 62, 420, 595, 688, 725, 842
SsiI CCGC 3 cut(s) 159, 438, 860
SspI AATATT 2 cut(s) 363, 813
SspMI CTAG 1 cut(s) 84
SstI GAGCTC 1 cut(s) 684
StyD4I CCNGG 1 cut(s) 830
TaaI ACNGT 3 cut(s) 175, 207, 379
TaiI ACGT 2 cut(s) 126, 589
TaqI TCGA 3 cut(s) 234, 697, 966
TasI AATT 6 cut(s) 62, 420, 595, 688, 725, 842
TfiI GAWTC 1 cut(s) 212
Tru1I TTAA 8 cut(s) 359, 393, 444, 486, 639, 702, 771, 962
Tru9I TTAA 8 cut(s) 359, 393, 444, 486, 639, 702, 771, 962
TscAI CASTG 2 cut(s) 180, 382
TseFI GTSAC 1 cut(s) 589
TseI GCWGC 2 cut(s) 80, 952
Tsp45I GTSAC 1 cut(s) 589
TspDTI ATGAA 4 cut(s) 216, 278, 789, 822
TspGWI ACGGA 1 cut(s) 125
TspRI CASTG 2 cut(s) 180, 382
Tth111I GACNNNGTC 1 cut(s) 929
VpaK11BI GGWCC 2 cut(s) 463, 834
VspI ATTAAT 1 cut(s) 486
XapI RAATTY 5 cut(s) 420, 595, 688, 725, 842
XceI RCATGY 1 cut(s) 521
XmnI GAANNNNTTC 1 cut(s) 813
XspI CTAG 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.