FvH4_4g34100

Belongs to the BCP1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0003878
Physical Location & Seq
Forward (+)
32058288 .. 32062015
3728 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g34100.t1

Sequence Viewer

Length: 978 bp
ATGCCCCGTAGGCCGACAAGGCATAGAGCACTGGTAAAATCACGTCCTCTGACCTTCTCCAAATTTTCTCGTCAAGCTGCTAGGGTTGCTTCTGTCTTTACTATCAAGCGTCAAATGCATACCGCCAAAGTCCTTCAAAAATCACCACCAAATTCTGCAGTTACTAAATCAGTCAAGAATAATTTGAAAGCAAAGAATGAAGAGTCGGAATCTTCAAAAGAAGAAGAGGAGTTTGATGGAAATGTTCAAGTAGATTTTGCATTCTTTGATCCGAAAGCTGATGACTTTCATGGAGTGAAGACCTTGCTGCAGACCTACCTTGATGATAAAGAGTGGGATTTGAGTGGTTTTGTAGACTTAATATTGGAACAGACCACTGTAGGGTCTGTTGTTAAAATAGAGGATGACGAAGATAATGGAATTTTTGGTCTTGTTACCGCCCTTAACTTGGGGAGATACAAGGACCAGAAATGTATGACAGAGATTAAGGAGTTTCTCCTCAAAGTTTCTCAGAAAGATGTAATAGATGACCTGAGTTCACTTTTGGGAAAGGAAGCACATAGTGTTGGTCTATTGGTCTCTCAACGTGTGACAAATTTACCTCCACAGCTCTTGCCACCTCTTTATGAAGGCCTCTTTAACGAAGTTTCTTGGGCCACAGAAGATGAGCCAACTGAGGAGCTCAAGAATTCCTTTCGATTTAAGTTTTATATAATAGTCACCAAGTCCTACAAGCAAAAAACTGCTGACAAGAAAAGGAAGCAGAATGTGAATGAAGAGGCAATAATATATGTAAAGCCAGAAGATGAAATATATCACAAGCTCAGCTCCTGGTCCTTCGAATTTTCTTTGAACACTCCGCAGATTCCACCTCATGAGCTAAGAAACTATCAGCAAACGGGGTTAGTCATGGCTGTGAAAGCAGACAAGATCTCTGCATTCCAACAACAGCTGCAGTCTTTAATAGAGGAACCTTGA

Protein Analysis

326

Amino Acids

37.22

Weight (kDa)

6.15

Isoelectric Point (pI)

49.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BCCIP PF13862 82 - 272 1.8e-59 BCCIP
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 354
AciI CCGC 3 cut(s) 123, 438, 860
AclWI GGATC 1 cut(s) 263
AcsI RAATTY 6 cut(s) 62, 151, 420, 595, 688, 842
AdeI CACNNNGTG 1 cut(s) 563
AfiI CCNNNNNNNGG 2 cut(s) 381, 448
AflIII ACRYGT 1 cut(s) 586
AgsI TTSAA 5 cut(s) 137, 187, 216, 248, 853
AjiI CACGTC 1 cut(s) 44
AjnI CCWGG 1 cut(s) 830
AluBI AGCT 8 cut(s) 77, 278, 610, 682, 823, 828, 880, 952
AluI AGCT 8 cut(s) 77, 278, 610, 682, 823, 828, 880, 952
Alw21I GWGCWC 2 cut(s) 31, 684
Alw26I GTCTC 1 cut(s) 583
AlwI GGATC 1 cut(s) 263
AlwNI CAGNNNCTG 1 cut(s) 831
AoxI GGCC 3 cut(s) 11, 631, 654
ApeKI GCWGC 3 cut(s) 77, 307, 952
ApoI RAATTY 6 cut(s) 62, 151, 420, 595, 688, 842
AspS9I GGNCC 3 cut(s) 463, 654, 834
AsuHPI GGTGA 2 cut(s) 135, 712
AsuII TTCGAA 1 cut(s) 840
AvaII GGWCC 2 cut(s) 463, 834
BanII GRGCYC 1 cut(s) 684
BbsI GAAGAC 1 cut(s) 305
Bbv12I GWGCWC 2 cut(s) 31, 684
BbvI GCAGC 3 cut(s) 64, 294, 939
BccI CCATC 1 cut(s) 230
BciT130I CCWGG 1 cut(s) 832
BcoDI GTCTC 1 cut(s) 583
BfaI CTAG 1 cut(s) 81
BfmI CTRYAG 4 cut(s) 156, 308, 378, 953
BglI GCCNNNNNGGC 2 cut(s) 10, 19
BglII AGATCT 1 cut(s) 930
BisI GCNGC 3 cut(s) 78, 308, 953
BlpI GCTNAGC 1 cut(s) 824
BlsI GCNGC 3 cut(s) 79, 309, 954
Bme1390I CCNGG 1 cut(s) 832
Bme18I GGWCC 2 cut(s) 463, 834
BmgBI CACGTC 1 cut(s) 44
BmgT120I GGNCC 3 cut(s) 463, 654, 834
BmiI GGNNCC 1 cut(s) 972
BmrFI CCNGG 1 cut(s) 832
BpiI GAAGAC 1 cut(s) 305
Bpu1102I GCTNAGC 1 cut(s) 824
Bpu14I TTCGAA 1 cut(s) 840
BpuEI CTTGAG 1 cut(s) 668
BsaI GGTCTC 1 cut(s) 583
Bsc4I CCNNNNNNNGG 2 cut(s) 381, 448
Bse1I ACTGG 1 cut(s) 36
BseBI CCWGG 1 cut(s) 832
BseGI GGATG 1 cut(s) 409
BseLI CCNNNNNNNGG 2 cut(s) 381, 448
BseMII CTCAG 4 cut(s) 524, 524, 666, 838
BseNI ACTGG 1 cut(s) 36
BseRI GAGGAG 3 cut(s) 242, 488, 692
BseXI GCAGC 3 cut(s) 64, 294, 939
BshFI GGCC 3 cut(s) 13, 633, 656
BsiHKAI GWGCWC 2 cut(s) 31, 684
BslI CCNNNNNNNGG 2 cut(s) 381, 448
BsmAI GTCTC 1 cut(s) 583
BsmI GAATGC 2 cut(s) 260, 938
BsnI GGCC 3 cut(s) 13, 633, 656
Bso31I GGTCTC 1 cut(s) 583
Bsp119I TTCGAA 1 cut(s) 840
Bsp1286I GDGCHC 2 cut(s) 31, 684
Bsp143I GATC 2 cut(s) 268, 930
Bsp1720I GCTNAGC 1 cut(s) 824
BspACI CCGC 3 cut(s) 123, 438, 860
BspANI GGCC 3 cut(s) 13, 633, 656
BspCNI CTCAG 4 cut(s) 523, 525, 667, 837
BspHI TCATGA 1 cut(s) 874
BspLI GGNNCC 1 cut(s) 972
BspMAI CTGCAG 3 cut(s) 160, 312, 957
BspPI GGATC 1 cut(s) 263
BspT104I TTCGAA 1 cut(s) 840
BspTNI GGTCTC 1 cut(s) 583
BsrI ACTGG 1 cut(s) 36
BssMI GATC 2 cut(s) 268, 930
Bst2UI CCWGG 1 cut(s) 832
Bst4CI ACNGT 1 cut(s) 379
Bst6I CTCTTC 3 cut(s) 195, 219, 771
BstBI TTCGAA 1 cut(s) 840
BstDEI CTNAG 5 cut(s) 510, 533, 675, 824, 881
BstF5I GGATG 1 cut(s) 409
BstKTI GATC 2 cut(s) 271, 933
BstMAI GTCTC 1 cut(s) 583
BstMBI GATC 2 cut(s) 268, 930
BstMWI GCNNNNNNNGC 5 cut(s) 10, 19, 86, 115, 920
BstNI CCWGG 1 cut(s) 832
BstSCI CCNGG 1 cut(s) 830
BstSFI CTRYAG 4 cut(s) 156, 308, 378, 953
BstV1I GCAGC 3 cut(s) 64, 294, 939
BstV2I GAAGAC 1 cut(s) 305
BstX2I RGATCY 1 cut(s) 930
BstYI RGATCY 1 cut(s) 930
BsuRI GGCC 3 cut(s) 13, 633, 656
BtrI CACGTC 1 cut(s) 44
BtsCI GGATG 1 cut(s) 409
BtsIMutI CAGTG 2 cut(s) 29, 375
CaiI CAGNNNCTG 1 cut(s) 831
CciI TCATGA 1 cut(s) 874
Cfr13I GGNCC 3 cut(s) 463, 654, 834
CseI GACGC 1 cut(s) 98
CspCI CAANNNNNGTGG 2 cut(s) 594, 629
CviAII CATG 3 cut(s) 290, 875, 910
DdeI CTNAG 5 cut(s) 510, 533, 675, 824, 881
DpnI GATC 2 cut(s) 270, 932
DpnII GATC 2 cut(s) 268, 930
DraIII CACNNNGTG 1 cut(s) 563
Eam1104I CTCTTC 3 cut(s) 195, 219, 771
EarI CTCTTC 3 cut(s) 195, 219, 771
Ecl136II GAGCTC 1 cut(s) 682
Eco147I AGGCCT 1 cut(s) 633
Eco24I GRGCYC 1 cut(s) 684
Eco31I GGTCTC 1 cut(s) 583
Eco47I GGWCC 2 cut(s) 463, 834
Eco53kI GAGCTC 1 cut(s) 682
EcoICRI GAGCTC 1 cut(s) 682
EcoRI GAATTC 1 cut(s) 688
EcoRII CCWGG 1 cut(s) 830
EcoT22I ATGCAT 1 cut(s) 120
EcoT38I GRGCYC 1 cut(s) 684
FaeI CATG 3 cut(s) 293, 878, 913
FalI AAGNNNNNCTT 2 cut(s) 677, 709
FatI CATG 3 cut(s) 289, 874, 909
FblI GTMKAC 1 cut(s) 354
Fnu4HI GCNGC 3 cut(s) 78, 308, 953
FokI GGATG 1 cut(s) 416
FriOI GRGCYC 1 cut(s) 684
Fsp4HI GCNGC 3 cut(s) 78, 308, 953
FspBI CTAG 1 cut(s) 81
GluI GCNGC 3 cut(s) 78, 308, 953
HaeIII GGCC 3 cut(s) 13, 633, 656
HgaI GACGC 1 cut(s) 98
Hin1II CATG 3 cut(s) 293, 878, 913
HinfI GANTC 3 cut(s) 203, 209, 865
HphI GGTGA 2 cut(s) 135, 712
Hpy166II GTNNAC 2 cut(s) 355, 539
Hpy188I TCNGA 4 cut(s) 51, 208, 273, 513
Hpy188III TCNNGA 3 cut(s) 175, 685, 875
Hpy8I GTNNAC 2 cut(s) 355, 539
HpyAV CCTTC 4 cut(s) 64, 143, 623, 847
HpyCH4III ACNGT 1 cut(s) 379
HpyCH4IV ACGT 2 cut(s) 43, 586
HpyCH4V TGCA 6 cut(s) 118, 158, 260, 310, 938, 955
HpyF10VI GCNNNNNNNGC 5 cut(s) 10, 19, 86, 115, 920
HpyF3I CTNAG 5 cut(s) 510, 533, 675, 824, 881
HpySE526I ACGT 2 cut(s) 43, 586
Hsp92II CATG 3 cut(s) 293, 878, 913
Kzo9I GATC 2 cut(s) 268, 930
LmnI GCTCC 2 cut(s) 679, 833
LpnPI CCDG 6 cut(s) 17, 479, 545, 813, 817, 844
Lsp1109I GCAGC 3 cut(s) 64, 294, 939
MaeI CTAG 1 cut(s) 81
MaeII ACGT 2 cut(s) 43, 586
MaeIII GTNAC 4 cut(s) 160, 433, 589, 718
MalI GATC 2 cut(s) 270, 932
MboI GATC 2 cut(s) 268, 930
MboII GAAGA 9 cut(s) 204, 212, 233, 236, 310, 422, 674, 788, 815
MflI RGATCY 1 cut(s) 930
MhlI GDGCHC 2 cut(s) 31, 684
MluCI AATT 7 cut(s) 62, 151, 181, 420, 595, 688, 842
MlyI GAGTC 1 cut(s) 212
MmeI TCCRAC 2 cut(s) 186, 967
Mph1103I ATGCAT 1 cut(s) 120
MseI TTAA 7 cut(s) 359, 393, 444, 486, 639, 702, 962
MslI CAYNNNNRTG 1 cut(s) 914
MspA1I CMGCKG 1 cut(s) 952
MspR9I CCNGG 1 cut(s) 832
Mva1269I GAATGC 2 cut(s) 260, 938
MvaI CCWGG 1 cut(s) 832
MwoI GCNNNNNNNGC 5 cut(s) 10, 19, 86, 115, 920
NdeII GATC 2 cut(s) 268, 930
NlaIII CATG 3 cut(s) 293, 878, 913
NlaIV GGNNCC 1 cut(s) 972
NmuCI GTSAC 2 cut(s) 589, 718
NsiI ATGCAT 1 cut(s) 120
NspV TTCGAA 1 cut(s) 840
PagI TCATGA 1 cut(s) 874
PceI AGGCCT 1 cut(s) 633
PctI GAATGC 2 cut(s) 260, 938
PfeI GAWTC 2 cut(s) 209, 865
PkrI GCNGC 3 cut(s) 79, 309, 954
PleI GAGTC 1 cut(s) 211
PpsI GAGTC 1 cut(s) 211
Psp124BI GAGCTC 1 cut(s) 684
Psp6I CCWGG 1 cut(s) 830
PspGI CCWGG 1 cut(s) 830
PspN4I GGNNCC 1 cut(s) 972
PspPI GGNCC 3 cut(s) 463, 654, 834
PstI CTGCAG 3 cut(s) 160, 312, 957
PstNI CAGNNNCTG 1 cut(s) 831
PsuI RGATCY 1 cut(s) 930
PvuII CAGCTG 1 cut(s) 952
RseI CAYNNNNRTG 1 cut(s) 914
SacI GAGCTC 1 cut(s) 684
SaqAI TTAA 7 cut(s) 359, 393, 444, 486, 639, 702, 962
SatI GCNGC 3 cut(s) 78, 308, 953
Sau3AI GATC 2 cut(s) 268, 930
Sau96I GGNCC 3 cut(s) 463, 654, 834
SchI GAGTC 1 cut(s) 212
ScrFI CCNGG 1 cut(s) 832
SduI GDGCHC 2 cut(s) 31, 684
SfcI CTRYAG 4 cut(s) 156, 308, 378, 953
SfuI TTCGAA 1 cut(s) 840
SinI GGWCC 2 cut(s) 463, 834
SmiMI CAYNNNNRTG 1 cut(s) 914
SmlI CTYRAG 1 cut(s) 683
SmoI CTYRAG 1 cut(s) 683
Sse9I AATT 7 cut(s) 62, 151, 181, 420, 595, 688, 842
SseBI AGGCCT 1 cut(s) 633
SsiI CCGC 3 cut(s) 123, 438, 860
SspI AATATT 1 cut(s) 363
SspMI CTAG 1 cut(s) 81
SstI GAGCTC 1 cut(s) 684
StuI AGGCCT 1 cut(s) 633
StyD4I CCNGG 1 cut(s) 830
TaaI ACNGT 1 cut(s) 379
TaiI ACGT 2 cut(s) 46, 589
TaqI TCGA 2 cut(s) 697, 840
TasI AATT 7 cut(s) 62, 151, 181, 420, 595, 688, 842
TfiI GAWTC 2 cut(s) 209, 865
Tru1I TTAA 7 cut(s) 359, 393, 444, 486, 639, 702, 962
Tru9I TTAA 7 cut(s) 359, 393, 444, 486, 639, 702, 962
TscAI CASTG 2 cut(s) 36, 382
TseFI GTSAC 2 cut(s) 589, 718
TseI GCWGC 3 cut(s) 77, 307, 952
Tsp45I GTSAC 2 cut(s) 589, 718
TspDTI ATGAA 5 cut(s) 213, 278, 642, 789, 822
TspRI CASTG 2 cut(s) 36, 382
VpaK11BI GGWCC 2 cut(s) 463, 834
XapI RAATTY 6 cut(s) 62, 151, 420, 595, 688, 842
XmiI GTMKAC 1 cut(s) 354
XspI CTAG 1 cut(s) 81
Zsp2I ATGCAT 1 cut(s) 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.