Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0003878

Physical Location & Seq

Genomic Coordinates Forward (+)

193381 .. 197260

Gene Structure 3880 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G002300.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGCCCCGTAAACCGATGAGACATCGCCGATTGATGAAATATCAACCTCTGACTTTTTCCCCATTTGCTCGTCAAGTCGCTCGAGTTGCCTCCAGCTGCATGTCGAACCGCCAAATGCATGGCCCAGACCTCCCGAAAAAATCTCAACCTAACTCCGTAGGTAATGGATCGAGAAAGAACACTTTGAAAGTCAAGAATGAACACTCCGAGTCTTCTGATGAAGAAGAGTTTGATGGAACTGTGCAAGCAGATTTTGCTTTCTTTGATCCAAAACCTGATGACTTTCATGGAGTGAAGACCTTGCTACAGACCTACCTTGATGATATAGAATGGGATTTGAGTGGTTTTGTAGACTTAATTTTGGAACAGACCACTGTAGGAACTGTTGTTAAAATAGAGGATGATGAAGACAATGGAATTTTTGCTCTTGCTACTGCCCTTAACTTGGGCAGATATAAGGACCACAAATGTTTTATGGACGTTAAGGAGTTTCTCCTTAAGGTATCTCAAGCGAAGGATGTAATAGATGACCTGCGATCACTTTTGGGAAAGGAAGCAGAGAGTGTCGGTCTCTTGGTCTCTCAACGGGTGATGAATTTACCTCCACAGCTCTTGCCACCTCTTTATGATGCGCTCTTTGATGAAGTCTCTTGGGCTACGGAAGATGAGCCAACAGAGGAGCTCCGCAATTTCTTTCGTTTTAAGTTTTATATAATAGTCAGTAAAGTTTACAAGCACAAAAATGCACACCAGAAAAAGGGCATGAGTGCTAGTGACGAGGAAATAATATATATAAAGCCAGAAGATGAAATTTTTCACGAGCTAAGCTCCTGGTCGTTTGAATTTTCTTTGCACACTCAGCAGCTTGCAACTCGTGAGCTGAGAGACTATCGGCAAATGGGGTTAGTCATGGCGGTTAAAGCAGACAAGATCCCTGCATTTCGACAGCAGTTAAAATCTTTCATAGAGGGATCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BCIP

Protein Analysis

326

Amino Acids

37.42

Weight (kDa)

5.67

Isoelectric Point (pI)

46.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003878)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44510
fragaria_vesca	FvH4_4g34100 FvH4_4g34100 FvH4_4g34100 FvH4_4g34100 FvH4_4g34100 FvH4_4g34100 FvH4_4g34100 FvH4_4g34100
malus_domestica	MD16G1023100.v1.1
prunus_persica	Prupe.1G329700_v2.0.a1 Prupe.1G329700_v2.0.a1 Prupe.8G002300_v2.0.a1 Prupe.8G002300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0448371 RchiOBHm_Chr4g0443611
rosa_laevigata	RLG00000005910 RLG00000025919
rosa_multiflora	Rmu_sc0001118.1_g000015
rosa_roxburghii	Rroxscaffold_5G00384160 Rroxscaffold_6G00426570
rosa_rugosa	Rorug02G0611800
rosa_samantha	Rh3AG011000 Rh3BG010800 Rh3CG010500 Rh3DG011200 Rh4AG403500 Rh4AG405500 Rh4BG416500 Rh4CG431000 Rh4DG410800 Rh4DG412100
rosa_wichuraiana	Rw3G000860 Rw4G034810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	540
AccI	GTMKAC	1 cut(s)	351
AciI	CCGC	3 cut(s)	109, 685, 914
AclWI	GGATC	3 cut(s)	175, 260, 925
AcsI	RAATTY	4 cut(s)	417, 595, 810, 842
AfiI	CCNNNNNNNGG	2 cut(s)	445, 757
AflII	CTTAAG	1 cut(s)	497
AgsI	TTSAA	2 cut(s)	187, 842
AjnI	CCWGG	1 cut(s)	830
AluBI	AGCT	7 cut(s)	96, 610, 682, 823, 828, 865, 880
AluI	AGCT	7 cut(s)	96, 610, 682, 823, 828, 865, 880
Alw21I	GWGCWC	1 cut(s)	684
Alw26I	GTCTC	5 cut(s)	13, 575, 583, 652, 879
AlwI	GGATC	3 cut(s)	175, 260, 925
Ama87I	CYCGRG	1 cut(s)	81
AoxI	GGCC	1 cut(s)	121
ApeKI	GCWGC	2 cut(s)	96, 862
ApoI	RAATTY	4 cut(s)	417, 595, 810, 842
Asp700I	GAANNNNTTC	1 cut(s)	813
AspLEI	GCGC	1 cut(s)	634
AspS9I	GGNCC	2 cut(s)	122, 460
AsuHPI	GGTGA	1 cut(s)	601
AvaI	CYCGRG	1 cut(s)	81
AvaII	GGWCC	1 cut(s)	460
BanII	GRGCYC	1 cut(s)	684
BauI	CACGAG	2 cut(s)	818, 873
BbsI	GAAGAC	3 cut(s)	204, 302, 414
Bbv12I	GWGCWC	1 cut(s)	684
BbvI	GCAGC	2 cut(s)	83, 874
BccI	CCATC	1 cut(s)	227
BciT130I	CCWGG	1 cut(s)	832
BcoDI	GTCTC	5 cut(s)	13, 575, 583, 652, 879
BfaI	CTAG	1 cut(s)	771
BfmI	CTRYAG	2 cut(s)	305, 375
BfrI	CTTAAG	1 cut(s)	497
BfuAI	ACCTGC	1 cut(s)	540
BisI	GCNGC	2 cut(s)	97, 863
BlpI	GCTNAGC	1 cut(s)	824
BlsI	GCNGC	2 cut(s)	98, 864
Bme1390I	CCNGG	1 cut(s)	832
Bme18I	GGWCC	1 cut(s)	460
BmeT110I	CYCGRG	1 cut(s)	81
BmgT120I	GGNCC	2 cut(s)	122, 460
BmrFI	CCNGG	1 cut(s)	832
BmsI	GCATC	1 cut(s)	619
BpiI	GAAGAC	3 cut(s)	204, 302, 414
BplI	GAGNNNNNCTC	2 cut(s)	812, 844
BpmI	CTGGAG	1 cut(s)	76
Bpu1102I	GCTNAGC	1 cut(s)	824
BpuEI	CTTGAG	1 cut(s)	492
BsaI	GGTCTC	2 cut(s)	575, 583
Bsc4I	CCNNNNNNNGG	2 cut(s)	445, 757
BseBI	CCWGG	1 cut(s)	832
BseGI	GGATG	2 cut(s)	406, 523
BseLI	CCNNNNNNNGG	2 cut(s)	445, 757
BseMII	CTCAG	2 cut(s)	872, 872
BseRI	GAGGAG	1 cut(s)	692
BseXI	GCAGC	2 cut(s)	83, 874
BshFI	GGCC	1 cut(s)	123
BsiHKAI	GWGCWC	1 cut(s)	684
BsiHKCI	CYCGRG	1 cut(s)	81
BslI	CCNNNNNNNGG	2 cut(s)	445, 757
BsmAI	GTCTC	5 cut(s)	13, 575, 583, 652, 879
BsnI	GGCC	1 cut(s)	123
Bso31I	GGTCTC	2 cut(s)	575, 583
BsoBI	CYCGRG	1 cut(s)	81
Bsp1286I	GDGCHC	1 cut(s)	684
Bsp143I	GATC	5 cut(s)	167, 265, 536, 930, 971
Bsp1720I	GCTNAGC	1 cut(s)	824
BspACI	CCGC	3 cut(s)	109, 685, 914
BspANI	GGCC	1 cut(s)	123
BspCNI	CTCAG	2 cut(s)	871, 873
BspMI	ACCTGC	1 cut(s)	540
BspPI	GGATC	3 cut(s)	175, 260, 925
BspTI	CTTAAG	1 cut(s)	497
BspTNI	GGTCTC	2 cut(s)	575, 583
BssMI	GATC	5 cut(s)	167, 265, 536, 930, 971
BssSI	CACGAG	2 cut(s)	818, 873
Bst2BI	CACGAG	2 cut(s)	818, 873
Bst2UI	CCWGG	1 cut(s)	832
Bst4CI	ACNGT	3 cut(s)	241, 376, 385
Bst6I	CTCTTC	1 cut(s)	219
BstAFI	CTTAAG	1 cut(s)	497
BstAPI	GCANNNNNTGC	1 cut(s)	254
BstC8I	GCNNGC	2 cut(s)	246, 867
BstDEI	CTNAG	3 cut(s)	824, 858, 881
BstF5I	GGATG	2 cut(s)	406, 523
BstHHI	GCGC	1 cut(s)	634
BstKTI	GATC	5 cut(s)	170, 268, 539, 933, 974
BstMAI	GTCTC	5 cut(s)	13, 575, 583, 652, 879
BstMBI	GATC	5 cut(s)	167, 265, 536, 930, 971
BstMWI	GCNNNNNNNGC	4 cut(s)	86, 254, 859, 920
BstNI	CCWGG	1 cut(s)	832
BstNSI	RCATGY	1 cut(s)	103
BstSCI	CCNGG	1 cut(s)	830
BstSFI	CTRYAG	2 cut(s)	305, 375
BstV1I	GCAGC	2 cut(s)	83, 874
BstV2I	GAAGAC	3 cut(s)	204, 302, 414
BstX2I	RGATCY	1 cut(s)	930
BstXI	CCANNNNNNTGG	1 cut(s)	119
BstYI	RGATCY	1 cut(s)	930
BsuRI	GGCC	1 cut(s)	123
BtgZI	GCGATG	1 cut(s)	8
BtsCI	GGATG	2 cut(s)	406, 523
BtsIMutI	CAGTG	1 cut(s)	372
BveI	ACCTGC	1 cut(s)	540
Cac8I	GCNNGC	2 cut(s)	246, 867
CfoI	GCGC	1 cut(s)	634
Cfr13I	GGNCC	2 cut(s)	122, 460
CspCI	CAANNNNNGTGG	2 cut(s)	594, 629
CviAII	CATG	5 cut(s)	100, 119, 287, 763, 910
DdeI	CTNAG	3 cut(s)	824, 858, 881
DpnI	GATC	5 cut(s)	169, 267, 538, 932, 973
DpnII	GATC	5 cut(s)	167, 265, 536, 930, 971
Eam1104I	CTCTTC	1 cut(s)	219
EarI	CTCTTC	1 cut(s)	219
Ecl136II	GAGCTC	1 cut(s)	682
Eco24I	GRGCYC	1 cut(s)	684
Eco31I	GGTCTC	2 cut(s)	575, 583
Eco47I	GGWCC	1 cut(s)	460
Eco53kI	GAGCTC	1 cut(s)	682
Eco88I	CYCGRG	1 cut(s)	81
EcoICRI	GAGCTC	1 cut(s)	682
EcoRII	CCWGG	1 cut(s)	830
EcoT22I	ATGCAT	1 cut(s)	120
EcoT38I	GRGCYC	1 cut(s)	684
FaeI	CATG	5 cut(s)	103, 122, 290, 766, 913
FatI	CATG	5 cut(s)	99, 118, 286, 762, 909
FblI	GTMKAC	1 cut(s)	351
Fnu4HI	GCNGC	2 cut(s)	97, 863
FokI	GGATG	2 cut(s)	413, 530
FriOI	GRGCYC	1 cut(s)	684
Fsp4HI	GCNGC	2 cut(s)	97, 863
FspBI	CTAG	1 cut(s)	771
GlaI	GCGC	1 cut(s)	633
GluI	GCNGC	2 cut(s)	97, 863
GsuI	CTGGAG	1 cut(s)	76
HaeIII	GGCC	1 cut(s)	123
HhaI	GCGC	1 cut(s)	634
Hin1II	CATG	5 cut(s)	103, 122, 290, 766, 913
Hin6I	GCGC	1 cut(s)	632
HinP1I	GCGC	1 cut(s)	632
HinfI	GANTC	1 cut(s)	209
HphI	GGTGA	1 cut(s)	601
Hpy166II	GTNNAC	3 cut(s)	11, 352, 730
Hpy188I	TCNGA	3 cut(s)	51, 208, 217
Hpy188III	TCNNGA	6 cut(s)	133, 171, 193, 818, 875, 975
Hpy8I	GTNNAC	3 cut(s)	11, 352, 730
HpyAV	CCTTC	1 cut(s)	508
HpyCH4III	ACNGT	3 cut(s)	241, 376, 385
HpyCH4IV	ACGT	1 cut(s)	480
HpyCH4V	TGCA	7 cut(s)	99, 118, 244, 746, 853, 869, 938
HpyF10VI	GCNNNNNNNGC	4 cut(s)	86, 254, 859, 920
HpyF3I	CTNAG	3 cut(s)	824, 858, 881
HpySE526I	ACGT	1 cut(s)	480
Hsp92II	CATG	5 cut(s)	103, 122, 290, 766, 913
HspAI	GCGC	1 cut(s)	632
Kzo9I	GATC	5 cut(s)	167, 265, 536, 930, 971
LmnI	GCTCC	3 cut(s)	679, 687, 833
LpnPI	CCDG	9 cut(s)	106, 138, 288, 545, 764, 813, 817, 844, 948
Lsp1109I	GCAGC	2 cut(s)	83, 874
LweI	GCATC	1 cut(s)	619
MaeI	CTAG	1 cut(s)	771
MaeII	ACGT	1 cut(s)	480
MaeIII	GTNAC	1 cut(s)	773
MalI	GATC	5 cut(s)	169, 267, 538, 932, 973
MboI	GATC	5 cut(s)	167, 265, 536, 930, 971
MboII	GAAGA	7 cut(s)	204, 233, 236, 307, 419, 674, 815
MflI	RGATCY	1 cut(s)	930
MhlI	GDGCHC	1 cut(s)	684
MluCI	AATT	6 cut(s)	357, 417, 595, 688, 810, 842
MlyI	GAGTC	1 cut(s)	218
MnlI	CCTC	9 cut(s)	57, 100, 140, 391, 612, 630, 670, 772, 961
Mph1103I	ATGCAT	1 cut(s)	120
MroXI	GAANNNNTTC	1 cut(s)	813
MseI	TTAA	8 cut(s)	356, 390, 441, 483, 498, 702, 918, 953
MslI	CAYNNNNRTG	1 cut(s)	741
MspA1I	CMGCKG	1 cut(s)	96
MspCI	CTTAAG	1 cut(s)	497
MspR9I	CCNGG	1 cut(s)	832
MvaI	CCWGG	1 cut(s)	832
MwoI	GCNNNNNNNGC	4 cut(s)	86, 254, 859, 920
NdeII	GATC	5 cut(s)	167, 265, 536, 930, 971
NlaIII	CATG	5 cut(s)	103, 122, 290, 766, 913
NmuCI	GTSAC	1 cut(s)	773
NsiI	ATGCAT	1 cut(s)	120
NspI	RCATGY	1 cut(s)	103
PaeR7I	CTCGAG	1 cut(s)	81
PdmI	GAANNNNTTC	1 cut(s)	813
PkrI	GCNGC	2 cut(s)	98, 864
PleI	GAGTC	1 cut(s)	217
PpsI	GAGTC	1 cut(s)	217
Psp124BI	GAGCTC	1 cut(s)	684
Psp6I	CCWGG	1 cut(s)	830
PspGI	CCWGG	1 cut(s)	830
PspPI	GGNCC	2 cut(s)	122, 460
PspXI	VCTCGAGB	1 cut(s)	81
PsuI	RGATCY	1 cut(s)	930
PvuII	CAGCTG	1 cut(s)	96
RseI	CAYNNNNRTG	1 cut(s)	741
SacI	GAGCTC	1 cut(s)	684
SaqAI	TTAA	8 cut(s)	356, 390, 441, 483, 498, 702, 918, 953
SatI	GCNGC	2 cut(s)	97, 863
Sau3AI	GATC	5 cut(s)	167, 265, 536, 930, 971
Sau96I	GGNCC	2 cut(s)	122, 460
SchI	GAGTC	1 cut(s)	218
ScrFI	CCNGG	1 cut(s)	832
SduI	GDGCHC	1 cut(s)	684
SfaNI	GCATC	1 cut(s)	619
SfcI	CTRYAG	2 cut(s)	305, 375
Sfr274I	CTCGAG	1 cut(s)	81
SinI	GGWCC	1 cut(s)	460
SlaI	CTCGAG	1 cut(s)	81
SmiMI	CAYNNNNRTG	1 cut(s)	741
SmlI	CTYRAG	3 cut(s)	81, 497, 507
SmoI	CTYRAG	3 cut(s)	81, 497, 507
Sse9I	AATT	6 cut(s)	357, 417, 595, 688, 810, 842
SsiI	CCGC	3 cut(s)	109, 685, 914
SspMI	CTAG	1 cut(s)	771
SstI	GAGCTC	1 cut(s)	684
StyD4I	CCNGG	1 cut(s)	830
TaaI	ACNGT	3 cut(s)	241, 376, 385
TaiI	ACGT	1 cut(s)	483
TaqI	TCGA	4 cut(s)	82, 104, 170, 943
TaqII	GACCGA	1 cut(s)	557
TasI	AATT	6 cut(s)	357, 417, 595, 688, 810, 842
Tru1I	TTAA	8 cut(s)	356, 390, 441, 483, 498, 702, 918, 953
Tru9I	TTAA	8 cut(s)	356, 390, 441, 483, 498, 702, 918, 953
TscAI	CASTG	1 cut(s)	379
TseFI	GTSAC	1 cut(s)	773
TseI	GCWGC	2 cut(s)	96, 862
Tsp45I	GTSAC	1 cut(s)	773
TspDTI	ATGAA	9 cut(s)	50, 213, 234, 275, 420, 608, 657, 822, 952
TspGWI	ACGGA	2 cut(s)	145, 674
TspRI	CASTG	1 cut(s)	379
Vha464I	CTTAAG	1 cut(s)	497
VpaK11BI	GGWCC	1 cut(s)	460
XapI	RAATTY	4 cut(s)	417, 595, 810, 842
XceI	RCATGY	1 cut(s)	103
XhoI	CTCGAG	1 cut(s)	81
XmiI	GTMKAC	1 cut(s)	351
XmnI	GAANNNNTTC	1 cut(s)	813
XspI	CTAG	1 cut(s)	771
Zsp2I	ATGCAT	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.