MD16G1023100.v1.1

Belongs to the BCP1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0003878
Physical Location & Seq
Forward (+)
1681633 .. 1685227
3595 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1023100.v1.1.491

Sequence Viewer

Length: 921 bp
ATGGACAACCGCCGAAGGCATGGCAGAGACCTCCCTGAAAATTCACTACCTAATTCCACAGGTAATGGTTGGATAAAGAGACCTTCGGAAATCAAGAAAGAACAGTCCACGTCTTCTGATGAAGAAGAGTTTGATGGAACTGTCCAAGCAGATTTTGCTTTCTTTGATCCAAAACCTGACGACTTTCATGGAGTGAAGATGTTGCTTCAGACATACCTTGATGATAAAGAATGGGATTTGAGTGGTTTTGCAGACTTAATATTGGAACAGACCACTGTAGGAACTGTTGTTAAAATAGAGGATGATGAAGATAATGGAATTTTCGCTCTTGCTACTGCCCTTAACTTGGAAAGATACAAGGGCCATAAATGTATTACGGAGGTTAAGGAGTTTCTCCTTAAAGTATGTCAAGAGAAGGATGTGAAAGATGACCTGAGATCACTTTTGGGAAAGGAAGCAAAGAGTGTGGGTCTTTTGGTCTCTCAACGGGTGACAAATTTACCTCTGCAGCTCTTGCCACCTCTTTATGATGCGCTCTTTGATGAAGTCTCTTGGGCTACAGAAGATGAGCCAACAGAGGAGCTCCAGAATTTCTTTCGTTTTAAGGTTTACATAATAGTCAGTAAAGTCTACAAGCTAAGAAATGCACACCAGAAAAAGGGCGTGAGTGTCAGTGAAGAGCCAATAATATATATAAAGCCAGAAGATGAAATTTTTCACGAGCTGAGCACCTGGTCCTTCGAGTTTCCTTTGCACACTGAGCAACCAACTCTTGAGCTAAGAAACTATCAGCAAATGGGACTAGTCATGGCTGTTAAAGCAGACCGGATCCCAACGTTCCGACAACAGATAAAATCTCTAGTGTCGCAGGTGCCTAATTTTGATGTCTTTCTGCCCGTGCCTGAGACGGCCCCTCACTAG

Protein Analysis

307

Amino Acids

35.21

Weight (kDa)

4.9

Isoelectric Point (pI)

45.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BCCIP PF13862 47 - 239 2e-59 BCCIP
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 859
Acc36I ACCTGC 1 cut(s) 859
AccB1I GGYRCC 1 cut(s) 871
AccI GTMKAC 1 cut(s) 630
AciI CCGC 1 cut(s) 10
AclI AACGTT 1 cut(s) 836
AclWI GGATC 3 cut(s) 161, 823, 836
AcsI RAATTY 5 cut(s) 40, 318, 496, 589, 711
AcuI CTGAAG 1 cut(s) 191
AfiI CCNNNNNNNGG 2 cut(s) 346, 658
AhlI ACTAGT 1 cut(s) 802
AjiI CACGTC 1 cut(s) 111
AjnI CCWGG 1 cut(s) 731
AluBI AGCT 5 cut(s) 511, 583, 637, 724, 778
AluI AGCT 5 cut(s) 511, 583, 637, 724, 778
Alw21I GWGCWC 2 cut(s) 585, 731
Alw26I GTCTC 5 cut(s) 21, 73, 484, 553, 899
AlwI GGATC 3 cut(s) 161, 823, 836
AoxI GGCC 2 cut(s) 361, 909
ApeKI GCWGC 1 cut(s) 508
ApoI RAATTY 5 cut(s) 40, 318, 496, 589, 711
Asp700I GAANNNNTTC 1 cut(s) 714
AspLEI GCGC 1 cut(s) 535
AspS9I GGNCC 3 cut(s) 361, 735, 910
AsuHPI GGTGA 1 cut(s) 502
AvaII GGWCC 1 cut(s) 735
BamHI GGATCC 1 cut(s) 828
BanI GGYRCC 1 cut(s) 871
BanII GRGCYC 1 cut(s) 585
BauI CACGAG 1 cut(s) 719
BbsI GAAGAC 1 cut(s) 105
Bbv12I GWGCWC 2 cut(s) 585, 731
BbvI GCAGC 1 cut(s) 520
BccI CCATC 1 cut(s) 128
BciT130I CCWGG 1 cut(s) 733
BcoDI GTCTC 5 cut(s) 21, 73, 484, 553, 899
BcuI ACTAGT 1 cut(s) 802
BfaI CTAG 3 cut(s) 803, 860, 919
BfmI CTRYAG 3 cut(s) 276, 506, 558
BfuAI ACCTGC 1 cut(s) 859
BisI GCNGC 1 cut(s) 509
BlpI GCTNAGC 1 cut(s) 725
BlsI GCNGC 1 cut(s) 510
Bme1390I CCNGG 1 cut(s) 733
Bme18I GGWCC 1 cut(s) 735
BmgBI CACGTC 1 cut(s) 111
BmgT120I GGNCC 3 cut(s) 361, 735, 910
BmiI GGNNCC 3 cut(s) 830, 873, 912
BmrFI CCNGG 1 cut(s) 733
BmsI GCATC 1 cut(s) 520
BpiI GAAGAC 1 cut(s) 105
BpmI CTGGAG 1 cut(s) 569
Bpu1102I GCTNAGC 1 cut(s) 725
BpuEI CTTGAG 1 cut(s) 794
BsaI GGTCTC 3 cut(s) 21, 73, 484
BsaWI WCCGGW 1 cut(s) 825
Bsc4I CCNNNNNNNGG 2 cut(s) 346, 658
BseBI CCWGG 1 cut(s) 733
BseGI GGATG 2 cut(s) 307, 424
BseLI CCNNNNNNNGG 2 cut(s) 346, 658
BseMII CTCAG 4 cut(s) 425, 716, 750, 894
BseRI GAGGAG 1 cut(s) 593
BseXI GCAGC 1 cut(s) 520
BshFI GGCC 2 cut(s) 363, 911
BshNI GGYRCC 1 cut(s) 871
BsiHKAI GWGCWC 2 cut(s) 585, 731
BsiSI CCGG 1 cut(s) 826
BslFI GGGAC 1 cut(s) 813
BslI CCNNNNNNNGG 2 cut(s) 346, 658
BsmAI GTCTC 5 cut(s) 21, 73, 484, 553, 899
BsmBI CGTCTC 1 cut(s) 899
BsmFI GGGAC 1 cut(s) 813
BsnI GGCC 2 cut(s) 363, 911
Bso31I GGTCTC 3 cut(s) 21, 73, 484
Bsp1286I GDGCHC 2 cut(s) 585, 731
Bsp143I GATC 3 cut(s) 166, 437, 828
Bsp1720I GCTNAGC 1 cut(s) 725
BspACI CCGC 1 cut(s) 10
BspANI GGCC 2 cut(s) 363, 911
BspCNI CTCAG 4 cut(s) 426, 717, 751, 895
BspLI GGNNCC 3 cut(s) 830, 873, 912
BspMAI CTGCAG 1 cut(s) 510
BspMI ACCTGC 1 cut(s) 859
BspPI GGATC 3 cut(s) 161, 823, 836
BspQI GCTCTTC 1 cut(s) 672
BspT107I GGYRCC 1 cut(s) 871
BspTNI GGTCTC 3 cut(s) 21, 73, 484
BssMI GATC 3 cut(s) 166, 437, 828
BssSI CACGAG 1 cut(s) 719
Bst2BI CACGAG 1 cut(s) 719
Bst2UI CCWGG 1 cut(s) 733
Bst4CI ACNGT 4 cut(s) 105, 142, 277, 286
Bst6I CTCTTC 2 cut(s) 120, 672
BstAPI GCANNNNNTGC 2 cut(s) 155, 514
BstDEI CTNAG 6 cut(s) 434, 638, 725, 759, 779, 903
BstF5I GGATG 2 cut(s) 307, 424
BstHHI GCGC 1 cut(s) 535
BstKTI GATC 3 cut(s) 169, 440, 831
BstMAI GTCTC 5 cut(s) 21, 73, 484, 553, 899
BstMBI GATC 3 cut(s) 166, 437, 828
BstMWI GCNNNNNNNGC 4 cut(s) 155, 514, 760, 818
BstNI CCWGG 1 cut(s) 733
BstSCI CCNGG 1 cut(s) 731
BstSFI CTRYAG 3 cut(s) 276, 506, 558
BstV1I GCAGC 1 cut(s) 520
BstV2I GAAGAC 1 cut(s) 105
BstX2I RGATCY 1 cut(s) 828
BstYI RGATCY 1 cut(s) 828
BsuRI GGCC 2 cut(s) 363, 911
BtrI CACGTC 1 cut(s) 111
BtsCI GGATG 2 cut(s) 307, 424
BtsIMutI CAGTG 3 cut(s) 273, 679, 756
BveI ACCTGC 1 cut(s) 859
CfoI GCGC 1 cut(s) 535
Cfr13I GGNCC 3 cut(s) 361, 735, 910
CsiI ACCWGGT 1 cut(s) 731
CspCI CAANNNNNGTGG 2 cut(s) 447, 482
CviAII CATG 3 cut(s) 20, 188, 808
DdeI CTNAG 6 cut(s) 434, 638, 725, 759, 779, 903
DpnI GATC 3 cut(s) 168, 439, 830
DpnII GATC 3 cut(s) 166, 437, 828
Eam1104I CTCTTC 2 cut(s) 120, 672
EarI CTCTTC 2 cut(s) 120, 672
Ecl136II GAGCTC 1 cut(s) 583
Eco24I GRGCYC 1 cut(s) 585
Eco31I GGTCTC 3 cut(s) 21, 73, 484
Eco47I GGWCC 1 cut(s) 735
Eco53kI GAGCTC 1 cut(s) 583
Eco57I CTGAAG 1 cut(s) 191
EcoICRI GAGCTC 1 cut(s) 583
EcoRII CCWGG 1 cut(s) 731
EcoT38I GRGCYC 1 cut(s) 585
Esp3I CGTCTC 1 cut(s) 899
FaeI CATG 3 cut(s) 23, 191, 811
FaqI GGGAC 1 cut(s) 813
FatI CATG 3 cut(s) 19, 187, 807
FblI GTMKAC 1 cut(s) 630
Fnu4HI GCNGC 1 cut(s) 509
FokI GGATG 2 cut(s) 314, 431
FriOI GRGCYC 1 cut(s) 585
Fsp4HI GCNGC 1 cut(s) 509
FspBI CTAG 3 cut(s) 803, 860, 919
GlaI GCGC 1 cut(s) 534
GluI GCNGC 1 cut(s) 509
GsuI CTGGAG 1 cut(s) 569
HaeIII GGCC 2 cut(s) 363, 911
HapII CCGG 1 cut(s) 826
HhaI GCGC 1 cut(s) 535
Hin1II CATG 3 cut(s) 23, 191, 811
Hin6I GCGC 1 cut(s) 533
HinP1I GCGC 1 cut(s) 533
HpaII CCGG 1 cut(s) 826
HphI GGTGA 1 cut(s) 502
Hpy166II GTNNAC 3 cut(s) 108, 610, 631
Hpy188I TCNGA 4 cut(s) 88, 118, 210, 842
Hpy188III TCNNGA 5 cut(s) 94, 410, 586, 719, 773
Hpy8I GTNNAC 3 cut(s) 108, 610, 631
HpyAV CCTTC 4 cut(s) 9, 93, 409, 748
HpyCH4III ACNGT 4 cut(s) 105, 142, 277, 286
HpyCH4IV ACGT 2 cut(s) 110, 836
HpyCH4V TGCA 4 cut(s) 251, 508, 647, 754
HpyF10VI GCNNNNNNNGC 4 cut(s) 155, 514, 760, 818
HpyF3I CTNAG 6 cut(s) 434, 638, 725, 759, 779, 903
HpySE526I ACGT 2 cut(s) 110, 836
Hsp92II CATG 3 cut(s) 23, 191, 811
HspAI GCGC 1 cut(s) 533
Kzo9I GATC 3 cut(s) 166, 437, 828
LguI GCTCTTC 1 cut(s) 672
LmnI GCTCC 2 cut(s) 580, 588
Lsp1109I GCAGC 1 cut(s) 520
LweI GCATC 1 cut(s) 520
MabI ACCWGGT 1 cut(s) 731
MaeI CTAG 3 cut(s) 803, 860, 919
MaeII ACGT 2 cut(s) 110, 836
MaeIII GTNAC 1 cut(s) 490
MalI GATC 3 cut(s) 168, 439, 830
MboI GATC 3 cut(s) 166, 437, 828
MboII GAAGA 8 cut(s) 105, 134, 137, 208, 320, 575, 689, 716
MflI RGATCY 1 cut(s) 828
MhlI GDGCHC 2 cut(s) 585, 731
MluCI AATT 7 cut(s) 40, 52, 318, 496, 589, 711, 877
MmeI TCCRAC 2 cut(s) 50, 865
MnlI CCTC 6 cut(s) 41, 292, 373, 513, 531, 571
MroXI GAANNNNTTC 1 cut(s) 714
MseI TTAA 7 cut(s) 257, 291, 342, 384, 399, 603, 816
MspI CCGG 1 cut(s) 826
MspR9I CCNGG 1 cut(s) 733
MvaI CCWGG 1 cut(s) 733
MwoI GCNNNNNNNGC 4 cut(s) 155, 514, 760, 818
NdeII GATC 3 cut(s) 166, 437, 828
NlaIII CATG 3 cut(s) 23, 191, 811
NlaIV GGNNCC 3 cut(s) 830, 873, 912
NmuCI GTSAC 1 cut(s) 490
PaqCI CACCTGC 1 cut(s) 859
PciSI GCTCTTC 1 cut(s) 672
PdmI GAANNNNTTC 1 cut(s) 714
PkrI GCNGC 1 cut(s) 510
Psp124BI GAGCTC 1 cut(s) 585
Psp1406I AACGTT 1 cut(s) 836
Psp6I CCWGG 1 cut(s) 731
PspGI CCWGG 1 cut(s) 731
PspN4I GGNNCC 3 cut(s) 830, 873, 912
PspPI GGNCC 3 cut(s) 361, 735, 910
PstI CTGCAG 1 cut(s) 510
PsuI RGATCY 1 cut(s) 828
SacI GAGCTC 1 cut(s) 585
SapI GCTCTTC 1 cut(s) 672
SaqAI TTAA 7 cut(s) 257, 291, 342, 384, 399, 603, 816
SatI GCNGC 1 cut(s) 509
Sau3AI GATC 3 cut(s) 166, 437, 828
Sau96I GGNCC 3 cut(s) 361, 735, 910
ScrFI CCNGG 1 cut(s) 733
SduI GDGCHC 2 cut(s) 585, 731
SexAI ACCWGGT 1 cut(s) 731
SfaNI GCATC 1 cut(s) 520
SfcI CTRYAG 3 cut(s) 276, 506, 558
SinI GGWCC 1 cut(s) 735
SmlI CTYRAG 1 cut(s) 773
SmoI CTYRAG 1 cut(s) 773
SpeI ACTAGT 1 cut(s) 802
Sse9I AATT 7 cut(s) 40, 52, 318, 496, 589, 711, 877
SsiI CCGC 1 cut(s) 10
SspI AATATT 1 cut(s) 261
SspMI CTAG 3 cut(s) 803, 860, 919
SstI GAGCTC 1 cut(s) 585
StyD4I CCNGG 1 cut(s) 731
TaaI ACNGT 4 cut(s) 105, 142, 277, 286
TaiI ACGT 2 cut(s) 113, 839
TaqI TCGA 1 cut(s) 741
TasI AATT 7 cut(s) 40, 52, 318, 496, 589, 711, 877
Tru1I TTAA 7 cut(s) 257, 291, 342, 384, 399, 603, 816
Tru9I TTAA 7 cut(s) 257, 291, 342, 384, 399, 603, 816
TscAI CASTG 3 cut(s) 280, 679, 763
TseFI GTSAC 1 cut(s) 490
TseI GCWGC 1 cut(s) 508
Tsp45I GTSAC 1 cut(s) 490
TspDTI ATGAA 5 cut(s) 135, 176, 321, 558, 723
TspGWI ACGGA 1 cut(s) 392
TspRI CASTG 3 cut(s) 280, 679, 763
VpaK11BI GGWCC 1 cut(s) 735
XapI RAATTY 5 cut(s) 40, 318, 496, 589, 711
XmiI GTMKAC 1 cut(s) 630
XmnI GAANNNNTTC 1 cut(s) 714
XspI CTAG 3 cut(s) 803, 860, 919
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.