Rmu_sc0008044.1_g000006

Protein LUTEIN DEFICIENT 5

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008044.1
Physical Location & Seq
Reverse (-)
30218 .. 35582
5365 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008044.1_g000006.1.cds

Sequence Viewer

Length: 1719 bp
atggctgccaccattcctctgcttcagttcgtccccaccaaaaccttccaaaccaagctccaaaccaataggctactcagacccacaaagcagagaggaaacattggtttctcagttattacatgctcttctaatggaagagggcctgattcagtgaagaatgaagtggaacagttggctgaagagaaaaggcgagctgagttgtctgctcggatttcctcaggagagttcactgtgaataaatctggttttccatctgaattgaggaacggtttgttgaagttgggtgttcctagggaggttctagacttttttttcaattggggagatacgcaacaaccctgtccgaaaattccagaggcaaaaggatcaattagtgctgttcagagtgaggcctttttcattcccctatatgagctctacctcacatatggtggaattttccggctgacctttggaccaaagtcctttttgatagtatctgatcctgccattgccaaacatatattaagagataattcaaaggcttattcaaagggaatcttggctgaaattctagaatttgtcatgggtaaaggacttatcccagcagatggtgaaatatggcgtgttcgacgacgtgctatagtccctgcattgcatctgaagtatgtaacagctatgattaacctcttcggacaagctacagagaggctttgtcaaaagctcgacactgctgcaactgatggcgaagatgtagagatggagtcacttttctctcgtttgacactggacatcattggcaaggcactttttaattatgactttgattcattaaccaatgacactgggatagttgaggctgtttacactgtcttgagagaagcagaagatcgcagtgttgcaccaattccagtctgggagattccaatatggaaagacatttcaccacgacagagaaaggtggcaaaagccctcaaattaatcaatgttacgttggatgatctaattgcaatttgcaagaggatggtagatgaagaagaactacagtttcatgaggagtacatcaatgaacaagatcctagtattctccatttccttttggcatcaggggatgatgtttctagcaagcaactccgtgatgacttgatgacaatgcttatagctgggcatgaaacatcagctgcagttttaacatggaccttttttcttctttccaaggagcctagggtcatgtcaaagctccaagaggaggttgattcaattctaggggatagaattccaaccattgaagacatgaaaaaactcaagaatgaggatatttttatttgtgtctggaatctgcatcgcagtccaacactgtgggatgacgcagataagtttaagcctgaaagatggccattagatggacccaatccaaatgagacgaaccaaaactttagttacttaccctttggtggaggaccacggaaatgtgtaggcgacatgtttgccacgtacgagaatgtggtagcacttacaatgcttgttcggagatttaactttcaaatggcacttggtgctcctgaggtgaagatgactacaggagcaacaattcacaccacagaaggattgaagatgacagtcacaagaagaataaaacctcccattgttcccacattggagatgccttcatttgaagtggatacatctgttggtgtttcgaaaggggattctttagttggtcaaaaaggtatataa

Protein Analysis

572

Amino Acids

64.19

Weight (kDa)

5.75

Isoelectric Point (pI)

39.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 593, 1385
AclWI GGATC 3 cut(s) 376, 479, 1052
AcoI YGGCCR 1 cut(s) 1376
AcsI RAATTY 5 cut(s) 351, 438, 552, 560, 1257
AcuI CTGAAG 3 cut(s) 8, 201, 665
AdeI CACNNNGTG 1 cut(s) 1538
AfaI GTAC 2 cut(s) 1043, 1478
AfiI CCNNNNNNNGG 4 cut(s) 593, 1231, 1385, 1436
AflIII ACRYGT 1 cut(s) 1464
AgsI TTSAA 9 cut(s) 280, 319, 522, 534, 1242, 1271, 1526, 1594, 1658
AjiI CACGTC 1 cut(s) 620
AluBI AGCT 9 cut(s) 58, 197, 418, 659, 683, 706, 1145, 1163, 1222
AluI AGCT 9 cut(s) 58, 197, 418, 659, 683, 706, 1145, 1163, 1222
Alw21I GWGCWC 2 cut(s) 420, 1543
Alw26I GTCTC 1 cut(s) 1397
AlwI GGATC 3 cut(s) 376, 479, 1052
AoxI GGCC 3 cut(s) 143, 393, 1376
ApeKI GCWGC 3 cut(s) 5, 716, 1163
ApoI RAATTY 5 cut(s) 351, 438, 552, 560, 1257
AseI ATTAAT 1 cut(s) 962
AspA2I CCTAGG 2 cut(s) 293, 1205
AspS9I GGNCC 5 cut(s) 143, 458, 1179, 1388, 1442
AsuHPI GGTGA 3 cut(s) 608, 918, 1561
AsuII TTCGAA 1 cut(s) 1682
AvaII GGWCC 4 cut(s) 458, 1179, 1388, 1442
AvrII CCTAGG 2 cut(s) 293, 1205
AxyI CCTNAGG 2 cut(s) 220, 1545
BaeI ACNNNNGTAYC 2 cut(s) 1656, 1689
BalI TGGCCA 1 cut(s) 1378
BanII GRGCYC 1 cut(s) 420
BarI GAAGNNNNNNTAC 2 cut(s) 1008, 1040
BbsI GAAGAC 1 cut(s) 1278
Bbv12I GWGCWC 2 cut(s) 420, 1543
BbvI GCAGC 2 cut(s) 703, 1150
BccI CCATC 7 cut(s) 262, 587, 719, 736, 1000, 1368, 1379
BcgI CGANNNNNNTGC 4 cut(s) 698, 732, 1451, 1485
BciVI GTATCC 1 cut(s) 1657
BcoDI GTCTC 1 cut(s) 1397
BfaI CTAG 7 cut(s) 294, 305, 557, 1062, 1104, 1206, 1247
BfmI CTRYAG 5 cut(s) 624, 684, 1025, 1164, 1560
BfuI GTATCC 1 cut(s) 1657
BisI GCNGC 3 cut(s) 6, 717, 1164
BlnI CCTAGG 2 cut(s) 293, 1205
BlsI GCNGC 3 cut(s) 7, 718, 1165
Bme18I GGWCC 4 cut(s) 458, 1179, 1388, 1442
BmgBI CACGTC 1 cut(s) 620
BmgT120I GGNCC 5 cut(s) 143, 458, 1179, 1388, 1442
BmiI GGNNCC 2 cut(s) 1203, 1390
BmrI ACTGGG 1 cut(s) 837
BmsI GCATC 4 cut(s) 649, 1094, 1333, 1635
BmuI ACTGGG 1 cut(s) 837
BoxI GACNNNNGTC 1 cut(s) 463
BpiI GAAGAC 1 cut(s) 1278
Bpu14I TTCGAA 1 cut(s) 1682
BpuEI CTTGAG 2 cut(s) 877, 1271
BsaAI YACGTR 1 cut(s) 1476
BsaJI CCNNGG 4 cut(s) 293, 1197, 1205, 1445
Bsc4I CCNNNNNNNGG 4 cut(s) 593, 1231, 1385, 1436
Bse1I ACTGG 3 cut(s) 774, 832, 893
Bse21I CCTNAGG 2 cut(s) 220, 1545
Bse3DI GCAATG 2 cut(s) 492, 635
BseDI CCNNGG 4 cut(s) 293, 1197, 1205, 1445
BseGI GGATG 4 cut(s) 985, 1011, 1099, 1351
BseLI CCNNNNNNNGG 4 cut(s) 593, 1231, 1385, 1436
BseMI GCAATG 2 cut(s) 492, 635
BseMII CTCAG 5 cut(s) 91, 126, 189, 234, 1536
BseNI ACTGG 3 cut(s) 774, 832, 893
BseRI GAGGAG 2 cut(s) 1052, 1244
BseXI GCAGC 2 cut(s) 703, 1150
BseYI CCCAGC 2 cut(s) 586, 1145
BshFI GGCC 3 cut(s) 145, 395, 1378
BsiHKAI GWGCWC 2 cut(s) 420, 1543
BsiSI CCGG 1 cut(s) 445
BsiWI CGTACG 1 cut(s) 1476
BslFI GGGAC 2 cut(s) 17, 614
BslI CCNNNNNNNGG 4 cut(s) 593, 1231, 1385, 1436
BsmAI GTCTC 1 cut(s) 1397
BsmBI CGTCTC 1 cut(s) 1397
BsmFI GGGAC 2 cut(s) 17, 614
BsnI GGCC 3 cut(s) 145, 395, 1378
Bsp119I TTCGAA 1 cut(s) 1682
Bsp1286I GDGCHC 2 cut(s) 420, 1543
Bsp143I GATC 5 cut(s) 368, 484, 871, 982, 1057
BspANI GGCC 3 cut(s) 145, 395, 1378
BspCNI CTCAG 5 cut(s) 90, 125, 190, 233, 1537
BspHI TCATGA 1 cut(s) 1033
BspLI GGNNCC 2 cut(s) 1203, 1390
BspMAI CTGCAG 1 cut(s) 1168
BspPI GGATC 3 cut(s) 376, 479, 1052
BspQI GCTCTTC 1 cut(s) 133
BspT104I TTCGAA 1 cut(s) 1682
BsrDI GCAATG 2 cut(s) 492, 635
BsrI ACTGG 3 cut(s) 774, 832, 893
BssECI CCNNGG 4 cut(s) 293, 1197, 1205, 1445
BssMI GATC 5 cut(s) 368, 484, 871, 982, 1057
BssT1I CCWWGG 3 cut(s) 293, 1197, 1205
Bst4CI ACNGT 7 cut(s) 174, 235, 272, 853, 1029, 1341, 1603
Bst6I CTCTTC 4 cut(s) 133, 133, 177, 677
BstAPI GCANNNNNTGC 1 cut(s) 1538
BstBAI YACGTR 1 cut(s) 1476
BstBI TTCGAA 1 cut(s) 1682
BstC8I GCNNGC 2 cut(s) 195, 1109
BstDEI CTNAG 5 cut(s) 77, 112, 198, 220, 1545
BstDSI CCRYGG 1 cut(s) 1445
BstF5I GGATG 4 cut(s) 985, 1011, 1099, 1351
BstKTI GATC 5 cut(s) 371, 487, 874, 985, 1060
BstMAI GTCTC 1 cut(s) 1397
BstMBI GATC 5 cut(s) 368, 484, 871, 982, 1057
BstMWI GCNNNNNNNGC 1 cut(s) 1538
BstNSI RCATGY 2 cut(s) 126, 1468
BstPAI GACNNNNGTC 1 cut(s) 463
BstSFI CTRYAG 5 cut(s) 624, 684, 1025, 1164, 1560
BstV1I GCAGC 2 cut(s) 703, 1150
BstV2I GAAGAC 1 cut(s) 1278
BstX2I RGATCY 1 cut(s) 1057
BstXI CCANNNNNNTGG 1 cut(s) 1341
BstYI RGATCY 1 cut(s) 1057
Bsu36I CCTNAGG 2 cut(s) 220, 1545
BsuI GTATCC 1 cut(s) 1657
BsuRI GGCC 3 cut(s) 145, 395, 1378
BtgI CCRYGG 1 cut(s) 1445
BtgZI GCGATG 1 cut(s) 1310
BtrI CACGTC 1 cut(s) 620
BtsCI GGATG 4 cut(s) 985, 1011, 1099, 1351
BtsI GCAGTG 2 cut(s) 711, 883
BtsIMutI CAGTG 8 cut(s) 159, 231, 711, 767, 825, 849, 883, 1337
Cac8I GCNNGC 2 cut(s) 195, 1109
CciI TCATGA 1 cut(s) 1033
Cfr13I GGNCC 5 cut(s) 143, 458, 1179, 1388, 1442
CseI GACGC 1 cut(s) 1358
Csp6I GTAC 2 cut(s) 1042, 1477
CviAII CATG 8 cut(s) 123, 568, 1034, 1151, 1176, 1213, 1276, 1465
CviQI GTAC 2 cut(s) 1042, 1477
DdeI CTNAG 5 cut(s) 77, 112, 198, 220, 1545
DpnI GATC 5 cut(s) 370, 486, 873, 984, 1059
DpnII GATC 5 cut(s) 368, 484, 871, 982, 1057
DraIII CACNNNGTG 1 cut(s) 1538
EaeI YGGCCR 1 cut(s) 1376
Eam1104I CTCTTC 4 cut(s) 133, 133, 177, 677
EarI CTCTTC 4 cut(s) 133, 133, 177, 677
Ecl136II GAGCTC 1 cut(s) 418
Eco130I CCWWGG 3 cut(s) 293, 1197, 1205
Eco147I AGGCCT 1 cut(s) 395
Eco24I GRGCYC 1 cut(s) 420
Eco47I GGWCC 4 cut(s) 458, 1179, 1388, 1442
Eco53kI GAGCTC 1 cut(s) 418
Eco57I CTGAAG 3 cut(s) 8, 201, 665
Eco81I CCTNAGG 2 cut(s) 220, 1545
EcoICRI GAGCTC 1 cut(s) 418
EcoO109I RGGNCCY 1 cut(s) 143
EcoRI GAATTC 1 cut(s) 1257
EcoT14I CCWWGG 3 cut(s) 293, 1197, 1205
EcoT38I GRGCYC 1 cut(s) 420
ErhI CCWWGG 3 cut(s) 293, 1197, 1205
Esp3I CGTCTC 1 cut(s) 1397
FaeI CATG 8 cut(s) 126, 571, 1037, 1154, 1179, 1216, 1279, 1468
FalI AAGNNNNNCTT 2 cut(s) 527, 559
FaqI GGGAC 2 cut(s) 17, 614
FatI CATG 8 cut(s) 122, 567, 1033, 1150, 1175, 1212, 1275, 1464
FauNDI CATATG 1 cut(s) 430
Fnu4HI GCNGC 3 cut(s) 6, 717, 1164
FokI GGATG 4 cut(s) 992, 1018, 1106, 1358
FriOI GRGCYC 1 cut(s) 420
Fsp4HI GCNGC 3 cut(s) 6, 717, 1164
FspBI CTAG 7 cut(s) 294, 305, 557, 1062, 1104, 1206, 1247
GluI GCNGC 3 cut(s) 6, 717, 1164
GsaI CCCAGC 2 cut(s) 590, 1149
HaeIII GGCC 3 cut(s) 145, 395, 1378
HapII CCGG 1 cut(s) 445
HgaI GACGC 1 cut(s) 1358
Hin1II CATG 8 cut(s) 126, 571, 1037, 1154, 1179, 1216, 1279, 1468
HinfI GANTC 8 cut(s) 149, 540, 746, 809, 904, 1238, 1318, 1691
HpaII CCGG 1 cut(s) 445
HphI GGTGA 3 cut(s) 608, 918, 1561
Hpy166II GTNNAC 2 cut(s) 231, 847
Hpy188I TCNGA 9 cut(s) 80, 213, 259, 348, 387, 484, 645, 677, 1512
Hpy188III TCNNGA 9 cut(s) 222, 305, 356, 557, 856, 1034, 1288, 1315, 1544
Hpy8I GTNNAC 2 cut(s) 231, 847
Hpy99I CGWCG 2 cut(s) 618, 621
HpyAV CCTTC 3 cut(s) 55, 1580, 1659
HpyCH4III ACNGT 7 cut(s) 174, 235, 272, 853, 1029, 1341, 1603
HpyCH4IV ACGT 3 cut(s) 619, 974, 1475
HpyCH4V TGCA 8 cut(s) 635, 640, 719, 884, 992, 999, 1166, 1324
HpyF10VI GCNNNNNNNGC 1 cut(s) 1538
HpyF3I CTNAG 5 cut(s) 77, 112, 198, 220, 1545
HpySE526I ACGT 3 cut(s) 619, 974, 1475
Hsp92II CATG 8 cut(s) 126, 571, 1037, 1154, 1179, 1216, 1279, 1468
Kzo9I GATC 5 cut(s) 368, 484, 871, 982, 1057
LguI GCTCTTC 1 cut(s) 133
LmnI GCTCC 5 cut(s) 63, 1201, 1227, 1546, 1565
Lsp1109I GCAGC 2 cut(s) 703, 1150
LweI GCATC 4 cut(s) 649, 1094, 1333, 1635
MaeI CTAG 7 cut(s) 294, 305, 557, 1062, 1104, 1206, 1247
MaeII ACGT 3 cut(s) 619, 974, 1475
MaeIII GTNAC 5 cut(s) 652, 747, 970, 1421, 1603
MalI GATC 5 cut(s) 370, 486, 873, 984, 1059
MboI GATC 5 cut(s) 368, 484, 871, 982, 1057
MfeI CAATTG 1 cut(s) 319
MflI RGATCY 1 cut(s) 1057
MhlI GDGCHC 2 cut(s) 420, 1543
MlsI TGGCCA 1 cut(s) 1378
MluNI TGGCCA 1 cut(s) 1378
MlyI GAGTC 1 cut(s) 755
MmeI TCCRAC 3 cut(s) 957, 1286, 1358
Mox20I TGGCCA 1 cut(s) 1378
MscI TGGCCA 1 cut(s) 1378
MseI TTAA 8 cut(s) 509, 666, 795, 815, 962, 1172, 1362, 1518
MslI CAYNNNNRTG 1 cut(s) 1450
Msp20I TGGCCA 1 cut(s) 1378
MspA1I CMGCKG 1 cut(s) 1163
MspI CCGG 1 cut(s) 445
MunI CAATTG 1 cut(s) 319
MwoI GCNNNNNNNGC 1 cut(s) 1538
NdeI CATATG 1 cut(s) 430
NdeII GATC 5 cut(s) 368, 484, 871, 982, 1057
NlaIII CATG 8 cut(s) 126, 571, 1037, 1154, 1179, 1216, 1279, 1468
NlaIV GGNNCC 2 cut(s) 1203, 1390
NmuCI GTSAC 2 cut(s) 747, 1603
NspI RCATGY 2 cut(s) 126, 1468
NspV TTCGAA 1 cut(s) 1682
PagI TCATGA 1 cut(s) 1033
PceI AGGCCT 1 cut(s) 395
PciI ACATGT 1 cut(s) 1464
PciSI GCTCTTC 1 cut(s) 133
PfeI GAWTC 7 cut(s) 149, 540, 809, 904, 1238, 1318, 1691
Pfl23II CGTACG 1 cut(s) 1476
PflMI CCANNNNNTGG 2 cut(s) 593, 1385
PkrI GCNGC 3 cut(s) 7, 718, 1165
PleI GAGTC 1 cut(s) 754
PpsI GAGTC 1 cut(s) 754
Ppu21I YACGTR 1 cut(s) 1476
PscI ACATGT 1 cut(s) 1464
PshAI GACNNNNGTC 1 cut(s) 463
PshBI ATTAAT 1 cut(s) 962
Psp124BI GAGCTC 1 cut(s) 420
PspFI CCCAGC 2 cut(s) 586, 1145
PspLI CGTACG 1 cut(s) 1476
PspN4I GGNNCC 2 cut(s) 1203, 1390
PspPI GGNCC 5 cut(s) 143, 458, 1179, 1388, 1442
PstI CTGCAG 1 cut(s) 1168
PsuI RGATCY 1 cut(s) 1057
PvuII CAGCTG 1 cut(s) 1163
RsaI GTAC 2 cut(s) 1043, 1478
RsaNI GTAC 2 cut(s) 1042, 1477
RseI CAYNNNNRTG 1 cut(s) 1450
SacI GAGCTC 1 cut(s) 420
SapI GCTCTTC 1 cut(s) 133
SaqAI TTAA 8 cut(s) 509, 666, 795, 815, 962, 1172, 1362, 1518
SatI GCNGC 3 cut(s) 6, 717, 1164
Sau3AI GATC 5 cut(s) 368, 484, 871, 982, 1057
Sau96I GGNCC 5 cut(s) 143, 458, 1179, 1388, 1442
SchI GAGTC 1 cut(s) 755
SduI GDGCHC 2 cut(s) 420, 1543
SfaNI GCATC 4 cut(s) 649, 1094, 1333, 1635
SfcI CTRYAG 5 cut(s) 624, 684, 1025, 1164, 1560
SfuI TTCGAA 1 cut(s) 1682
SinI GGWCC 4 cut(s) 458, 1179, 1388, 1442
SmiMI CAYNNNNRTG 1 cut(s) 1450
SmlI CTYRAG 2 cut(s) 856, 1286
SmoI CTYRAG 2 cut(s) 856, 1286
SseBI AGGCCT 1 cut(s) 395
SspMI CTAG 7 cut(s) 294, 305, 557, 1062, 1104, 1206, 1247
SstI GAGCTC 1 cut(s) 420
StuI AGGCCT 1 cut(s) 395
StyI CCWWGG 3 cut(s) 293, 1197, 1205
TaaI ACNGT 7 cut(s) 174, 235, 272, 853, 1029, 1341, 1603
TaiI ACGT 3 cut(s) 622, 977, 1478
TaqI TCGA 3 cut(s) 613, 708, 1682
TatI WGTACW 1 cut(s) 1041
TfiI GAWTC 7 cut(s) 149, 540, 809, 904, 1238, 1318, 1691
Tru1I TTAA 8 cut(s) 509, 666, 795, 815, 962, 1172, 1362, 1518
Tru9I TTAA 8 cut(s) 509, 666, 795, 815, 962, 1172, 1362, 1518
TscAI CASTG 8 cut(s) 159, 238, 718, 774, 832, 856, 883, 1344
TseFI GTSAC 2 cut(s) 747, 1603
TseI GCWGC 3 cut(s) 5, 716, 1163
Tsp45I GTSAC 2 cut(s) 747, 1603
TspDTI ATGAA 9 cut(s) 177, 391, 801, 1022, 1029, 1065, 1167, 1292, 1641
TspGWI ACGGA 2 cut(s) 1106, 1462
TspRI CASTG 8 cut(s) 159, 238, 718, 774, 832, 856, 883, 1344
Van91I CCANNNNNTGG 2 cut(s) 593, 1385
VpaK11BI GGWCC 4 cut(s) 458, 1179, 1388, 1442
VspI ATTAAT 1 cut(s) 962
XapI RAATTY 5 cut(s) 351, 438, 552, 560, 1257
XbaI TCTAGA 2 cut(s) 304, 556
XceI RCATGY 2 cut(s) 126, 1468
XcmI CCANNNNNNNNNTGG 1 cut(s) 894
XmaJI CCTAGG 2 cut(s) 293, 1205
XspI CTAG 7 cut(s) 294, 305, 557, 1062, 1104, 1206, 1247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.