Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8392743.1

Orthogroup ID

OG0005379

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1163

Gene Structure 1163 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8392743.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 392 bp

atggtagatgaagaagaactacagtttcatgaggagtacatcaatgaacaagatcctagtattctccatttccttttggcatcaggggatgatgtttctagcaagcaactccgtgatgacttgatgacaatgcttatagctgggcatgaaacatcagctgcagttttaacatggaccttttttcttctttccaaggagcctagggtcatgtcaaagctccaagaggaggttgattcaattctaggggatagaattccaaccattgaagacatgaaaaaactcaagtatgcaactcgagtgatcaacgaatccttgaggctttacccacaaccacctgtgttaatccgtcgttctcttgaggatgacatgcttggagaatacccgataaaaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0010291 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016122 GO:0016123 GO:0016491 GO:0031967 GO:0031975 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0055114 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

130

Amino Acids

15.07

Weight (kDa)

4.61

Isoelectric Point (pI)

61.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005379)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31800
fragaria_vesca	FvH4_6g00890 FvH4_6g00890 FvH4_6g00890 FvH4_6g00890 FvH4_6g00890 FvH4_6g00890 FvH4_6g00890
malus_domestica	MD04G1239800.v1.1 MD12G1257000.v1.1
prunus_persica	Prupe.6G358000_v2.0.a1 Prupe.6G358000_v2.0.a1 Prupe.6G358000_v2.0.a1 Prupe.6G358000_v2.0.a1
pyrus_communis	pycom04g21180 pycom12g23570
rosa_chinensis	RchiOBHm_Chr3g0448381
rosa_laevigata	RLG00000025918
rosa_multiflora	Rmu_co8392743.1_g000001 Rmu_sc0008044.1_g000006
rosa_roxburghii	Rroxscaffold_6G00426210 Rroxscaffold_6G00426580
rosa_rugosa	Rorug02G0611800 Rorug02G0611900
rosa_samantha	Rh3AG011100 Rh3BG010900 Rh3CG010600 Rh3DG011300
rosa_wichuraiana	Rw3G000870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	47
AcsI	RAATTY	1 cut(s)	252
AfaI	GTAC	1 cut(s)	38
AfiI	CCNNNNNNNGG	1 cut(s)	226
AgsI	TTSAA	2 cut(s)	237, 266
AluBI	AGCT	3 cut(s)	140, 158, 217
AluI	AGCT	3 cut(s)	140, 158, 217
AlwI	GGATC	1 cut(s)	47
Ama87I	CYCGRG	1 cut(s)	294
ApeKI	GCWGC	1 cut(s)	158
ApoI	RAATTY	1 cut(s)	252
AspA2I	CCTAGG	1 cut(s)	200
AspS9I	GGNCC	1 cut(s)	174
AvaI	CYCGRG	1 cut(s)	294
AvaII	GGWCC	1 cut(s)	174
AvrII	CCTAGG	1 cut(s)	200
BarI	GAAGNNNNNNTAC	1 cut(s)	35
BbsI	GAAGAC	1 cut(s)	273
BbvI	GCAGC	1 cut(s)	145
BclI	TGATCA	1 cut(s)	300
BfaI	CTAG	4 cut(s)	57, 99, 201, 242
BfmI	CTRYAG	2 cut(s)	20, 159
BisI	GCNGC	1 cut(s)	159
BlnI	CCTAGG	1 cut(s)	200
BlsI	GCNGC	1 cut(s)	160
Bme18I	GGWCC	1 cut(s)	174
BmeT110I	CYCGRG	1 cut(s)	294
BmgT120I	GGNCC	1 cut(s)	174
BmiI	GGNNCC	1 cut(s)	198
BmsI	GCATC	1 cut(s)	89
BpiI	GAAGAC	1 cut(s)	273
BpuEI	CTTGAG	3 cut(s)	266, 334, 377
BsaJI	CCNNGG	2 cut(s)	192, 200
Bsc4I	CCNNNNNNNGG	1 cut(s)	226
BseDI	CCNNGG	2 cut(s)	192, 200
BseGI	GGATG	2 cut(s)	94, 367
BseLI	CCNNNNNNNGG	1 cut(s)	226
BseRI	GAGGAG	2 cut(s)	47, 239
BseXI	GCAGC	1 cut(s)	145
BseYI	CCCAGC	1 cut(s)	140
BsiHKCI	CYCGRG	1 cut(s)	294
BslI	CCNNNNNNNGG	1 cut(s)	226
BsoBI	CYCGRG	1 cut(s)	294
Bsp143I	GATC	2 cut(s)	52, 300
BspHI	TCATGA	1 cut(s)	28
BspLI	GGNNCC	1 cut(s)	198
BspMAI	CTGCAG	1 cut(s)	163
BspPI	GGATC	1 cut(s)	47
BssECI	CCNNGG	2 cut(s)	192, 200
BssMI	GATC	2 cut(s)	52, 300
BssT1I	CCWWGG	2 cut(s)	192, 200
Bst4CI	ACNGT	1 cut(s)	24
BstC8I	GCNNGC	1 cut(s)	104
BstF5I	GGATG	2 cut(s)	94, 367
BstKTI	GATC	2 cut(s)	55, 303
BstMBI	GATC	2 cut(s)	52, 300
BstNSI	RCATGY	1 cut(s)	370
BstSFI	CTRYAG	2 cut(s)	20, 159
BstV1I	GCAGC	1 cut(s)	145
BstV2I	GAAGAC	1 cut(s)	273
BstX2I	RGATCY	1 cut(s)	52
BstYI	RGATCY	1 cut(s)	52
BtsCI	GGATG	2 cut(s)	94, 367
Cac8I	GCNNGC	1 cut(s)	104
CciI	TCATGA	1 cut(s)	28
Cfr13I	GGNCC	1 cut(s)	174
Csp6I	GTAC	1 cut(s)	37
CviAII	CATG	6 cut(s)	29, 146, 171, 208, 271, 367
CviJI	RGCY	5 cut(s)	140, 158, 199, 217, 319
CviKI_1	RGCY	5 cut(s)	140, 158, 199, 217, 319
CviQI	GTAC	1 cut(s)	37
DpnI	GATC	2 cut(s)	54, 302
DpnII	GATC	2 cut(s)	52, 300
Eco130I	CCWWGG	2 cut(s)	192, 200
Eco47I	GGWCC	1 cut(s)	174
Eco88I	CYCGRG	1 cut(s)	294
EcoRI	GAATTC	1 cut(s)	252
EcoT14I	CCWWGG	2 cut(s)	192, 200
ErhI	CCWWGG	2 cut(s)	192, 200
FaeI	CATG	6 cut(s)	32, 149, 174, 211, 274, 370
FaiI	YATR	8 cut(s)	30, 137, 147, 172, 209, 272, 288, 368
FatI	CATG	6 cut(s)	28, 145, 170, 207, 270, 366
FbaI	TGATCA	1 cut(s)	300
Fnu4HI	GCNGC	1 cut(s)	159
FokI	GGATG	2 cut(s)	101, 374
Fsp4HI	GCNGC	1 cut(s)	159
FspBI	CTAG	4 cut(s)	57, 99, 201, 242
GluI	GCNGC	1 cut(s)	159
GsaI	CCCAGC	1 cut(s)	144
Hin1II	CATG	6 cut(s)	32, 149, 174, 211, 274, 370
HinfI	GANTC	2 cut(s)	233, 308
Hpy188III	TCNNGA	2 cut(s)	29, 356
Hpy99I	CGWCG	1 cut(s)	351
HpyCH4III	ACNGT	1 cut(s)	24
HpyCH4V	TGCA	2 cut(s)	161, 290
Hsp92II	CATG	6 cut(s)	32, 149, 174, 211, 274, 370
Ksp22I	TGATCA	1 cut(s)	300
Kzo9I	GATC	2 cut(s)	52, 300
LmnI	GCTCC	2 cut(s)	196, 222
LpnPI	CCDG	3 cut(s)	69, 126, 348
Lsp1109I	GCAGC	1 cut(s)	145
LweI	GCATC	1 cut(s)	89
MaeI	CTAG	4 cut(s)	57, 99, 201, 242
MalI	GATC	2 cut(s)	54, 302
MboI	GATC	2 cut(s)	52, 300
MboII	GAAGA	4 cut(s)	23, 26, 176, 278
MflI	RGATCY	1 cut(s)	52
MluCI	AATT	2 cut(s)	237, 252
MmeI	TCCRAC	1 cut(s)	281
MnlI	CCTC	5 cut(s)	25, 217, 220, 309, 352
MseI	TTAA	2 cut(s)	167, 341
MspA1I	CMGCKG	1 cut(s)	158
NdeII	GATC	2 cut(s)	52, 300
NlaIII	CATG	6 cut(s)	32, 149, 174, 211, 274, 370
NlaIV	GGNNCC	1 cut(s)	198
NspI	RCATGY	1 cut(s)	370
PaeR7I	CTCGAG	1 cut(s)	294
PagI	TCATGA	1 cut(s)	28
PfeI	GAWTC	2 cut(s)	233, 308
PkrI	GCNGC	1 cut(s)	160
PspFI	CCCAGC	1 cut(s)	140
PspN4I	GGNNCC	1 cut(s)	198
PspPI	GGNCC	1 cut(s)	174
PspXI	VCTCGAGB	1 cut(s)	294
PstI	CTGCAG	1 cut(s)	163
PsuI	RGATCY	1 cut(s)	52
PvuII	CAGCTG	1 cut(s)	158
RsaI	GTAC	1 cut(s)	38
RsaNI	GTAC	1 cut(s)	37
SaqAI	TTAA	2 cut(s)	167, 341
SatI	GCNGC	1 cut(s)	159
Sau3AI	GATC	2 cut(s)	52, 300
Sau96I	GGNCC	1 cut(s)	174
SetI	ASST	6 cut(s)	142, 160, 179, 219, 231, 337
SfaNI	GCATC	1 cut(s)	89
SfcI	CTRYAG	2 cut(s)	20, 159
Sfr274I	CTCGAG	1 cut(s)	294
SinI	GGWCC	1 cut(s)	174
SlaI	CTCGAG	1 cut(s)	294
SmlI	CTYRAG	4 cut(s)	281, 294, 313, 356
SmoI	CTYRAG	4 cut(s)	281, 294, 313, 356
Sse9I	AATT	2 cut(s)	237, 252
SspMI	CTAG	4 cut(s)	57, 99, 201, 242
StyI	CCWWGG	2 cut(s)	192, 200
TaaI	ACNGT	1 cut(s)	24
TaqI	TCGA	1 cut(s)	295
TasI	AATT	2 cut(s)	237, 252
TatI	WGTACW	1 cut(s)	36
TfiI	GAWTC	2 cut(s)	233, 308
Tru1I	TTAA	2 cut(s)	167, 341
Tru9I	TTAA	2 cut(s)	167, 341
TseI	GCWGC	1 cut(s)	158
TspDTI	ATGAA	5 cut(s)	17, 24, 60, 162, 287
TspGWI	ACGGA	2 cut(s)	101, 335
VpaK11BI	GGWCC	1 cut(s)	174
XapI	RAATTY	1 cut(s)	252
XceI	RCATGY	1 cut(s)	370
XhoI	CTCGAG	1 cut(s)	294
XmaJI	CCTAGG	1 cut(s)	200
XspI	CTAG	4 cut(s)	57, 99, 201, 242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.