Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0005379

Physical Location & Seq

Genomic Coordinates Reverse (-)

47024419 .. 47028861

Gene Structure 4443 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00426210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGGTAGACGAAGAAGAACTGGAGTTTCATGAGGAGTACATGAATGAACAAGATCCTAGTATTCTCCATTTCCTTTTGGCGTCAGGAGATGATGTTTCTAGCAAGCAACTCCATGATGACTTGATGACAATGCTTATAGATGGGCATGAAATATCAGCTGCACTTTTAACATGGACTTTTTTCTTCTTCTTTTCCCAGTTACTTGCCCTTTGGTGGAGGACTGCGGAAATGTGTAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0010291 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016122 GO:0016123 GO:0016491 GO:0031967 GO:0031975 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0055114 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

79

Amino Acids

9.37

Weight (kDa)

4.18

Isoelectric Point (pI)

45.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005379)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31800
fragaria_vesca	FvH4_6g00890 FvH4_6g00890 FvH4_6g00890 FvH4_6g00890 FvH4_6g00890 FvH4_6g00890 FvH4_6g00890
malus_domestica	MD04G1239800.v1.1 MD12G1257000.v1.1
prunus_persica	Prupe.6G358000_v2.0.a1 Prupe.6G358000_v2.0.a1 Prupe.6G358000_v2.0.a1 Prupe.6G358000_v2.0.a1
pyrus_communis	pycom04g21180 pycom12g23570
rosa_chinensis	RchiOBHm_Chr3g0448381
rosa_laevigata	RLG00000025918
rosa_multiflora	Rmu_co8392743.1_g000001 Rmu_sc0008044.1_g000006
rosa_roxburghii	Rroxscaffold_6G00426210 Rroxscaffold_6G00426580
rosa_rugosa	Rorug02G0611800 Rorug02G0611900
rosa_samantha	Rh3AG011100 Rh3BG010900 Rh3CG010600 Rh3DG011300
rosa_wichuraiana	Rw3G000870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	6
AciI	CCGC	1 cut(s)	224
AclWI	GGATC	1 cut(s)	47
AcyI	GRCGYC	1 cut(s)	80
AfaI	GTAC	1 cut(s)	38
AfiI	CCNNNNNNNGG	1 cut(s)	213
AluBI	AGCT	1 cut(s)	158
AluI	AGCT	1 cut(s)	158
AlwI	GGATC	1 cut(s)	47
ApeKI	GCWGC	1 cut(s)	158
BbvI	GCAGC	1 cut(s)	145
BccI	CCATC	1 cut(s)	134
BfaI	CTAG	2 cut(s)	57, 99
BisI	GCNGC	1 cut(s)	159
BlsI	GCNGC	1 cut(s)	160
BmrI	ACTGGG	1 cut(s)	190
BmuI	ACTGGG	1 cut(s)	190
BpmI	CTGGAG	1 cut(s)	41
BsaHI	GRCGYC	1 cut(s)	80
BsaXI	ACNNNNNCTCC	2 cut(s)	78, 108
Bsc4I	CCNNNNNNNGG	1 cut(s)	213
Bse1I	ACTGG	2 cut(s)	24, 196
BseLI	CCNNNNNNNGG	1 cut(s)	213
BseNI	ACTGG	2 cut(s)	24, 196
BseRI	GAGGAG	1 cut(s)	47
BseXI	GCAGC	1 cut(s)	145
BsgI	GTGCAG	1 cut(s)	144
BslI	CCNNNNNNNGG	1 cut(s)	213
Bsp143I	GATC	1 cut(s)	52
BspACI	CCGC	1 cut(s)	224
BspHI	TCATGA	1 cut(s)	28
BspPI	GGATC	1 cut(s)	47
BsrI	ACTGG	2 cut(s)	24, 196
BssMI	GATC	1 cut(s)	52
BssNI	GRCGYC	1 cut(s)	80
BstACI	GRCGYC	1 cut(s)	80
BstC8I	GCNNGC	1 cut(s)	104
BstKTI	GATC	1 cut(s)	55
BstMBI	GATC	1 cut(s)	52
BstV1I	GCAGC	1 cut(s)	145
BstX2I	RGATCY	1 cut(s)	52
BstYI	RGATCY	1 cut(s)	52
Cac8I	GCNNGC	1 cut(s)	104
CciI	TCATGA	1 cut(s)	28
CseI	GACGC	1 cut(s)	69
Csp6I	GTAC	1 cut(s)	37
CviAII	CATG	5 cut(s)	29, 40, 113, 146, 171
CviJI	RGCY	1 cut(s)	158
CviKI_1	RGCY	1 cut(s)	158
CviQI	GTAC	1 cut(s)	37
DpnI	GATC	1 cut(s)	54
DpnII	GATC	1 cut(s)	52
FaeI	CATG	5 cut(s)	32, 43, 116, 149, 174
FaiI	YATR	6 cut(s)	30, 41, 114, 137, 147, 172
FatI	CATG	5 cut(s)	28, 39, 112, 145, 170
FblI	GTMKAC	1 cut(s)	6
Fnu4HI	GCNGC	1 cut(s)	159
Fsp4HI	GCNGC	1 cut(s)	159
FspBI	CTAG	2 cut(s)	57, 99
GluI	GCNGC	1 cut(s)	159
GsuI	CTGGAG	1 cut(s)	41
HgaI	GACGC	1 cut(s)	69
Hin1I	GRCGYC	1 cut(s)	80
Hin1II	CATG	5 cut(s)	32, 43, 116, 149, 174
Hpy166II	GTNNAC	1 cut(s)	7
Hpy188III	TCNNGA	2 cut(s)	29, 84
Hpy8I	GTNNAC	1 cut(s)	7
HpyCH4V	TGCA	1 cut(s)	161
Hsp92I	GRCGYC	1 cut(s)	80
Hsp92II	CATG	5 cut(s)	32, 43, 116, 149, 174
Kzo9I	GATC	1 cut(s)	52
LpnPI	CCDG	3 cut(s)	5, 69, 209
Lsp1109I	GCAGC	1 cut(s)	145
MaeI	CTAG	2 cut(s)	57, 99
MaeIII	GTNAC	1 cut(s)	198
MalI	GATC	1 cut(s)	54
MboI	GATC	1 cut(s)	52
MboII	GAAGA	4 cut(s)	23, 26, 175, 178
MflI	RGATCY	1 cut(s)	52
MnlI	CCTC	2 cut(s)	25, 210
MseI	TTAA	1 cut(s)	167
MspA1I	CMGCKG	1 cut(s)	158
NdeII	GATC	1 cut(s)	52
NlaIII	CATG	5 cut(s)	32, 43, 116, 149, 174
PagI	TCATGA	1 cut(s)	28
PkrI	GCNGC	1 cut(s)	160
PsuI	RGATCY	1 cut(s)	52
PvuII	CAGCTG	1 cut(s)	158
RsaI	GTAC	1 cut(s)	38
RsaNI	GTAC	1 cut(s)	37
SaqAI	TTAA	1 cut(s)	167
SatI	GCNGC	1 cut(s)	159
Sau3AI	GATC	1 cut(s)	52
SetI	ASST	2 cut(s)	160, 239
SsiI	CCGC	1 cut(s)	224
SspMI	CTAG	2 cut(s)	57, 99
TatI	WGTACW	1 cut(s)	36
Tru1I	TTAA	1 cut(s)	167
Tru9I	TTAA	1 cut(s)	167
TseI	GCWGC	1 cut(s)	158
TspDTI	ATGAA	4 cut(s)	17, 56, 60, 162
XmiI	GTMKAC	1 cut(s)	6
XspI	CTAG	2 cut(s)	57, 99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.