Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0017208

Physical Location & Seq

Genomic Coordinates Forward (+)

30523072 .. 30524798

Gene Structure 1727 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G362900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGCCTCCTCCATAGCTCTCCTCCACCTCTCCGCCACCCCCAAAACCCTAATACCCAAATCTTATGTTTGCTCCTCCTTCCCGTCGTCAACCCTGGTGGCGCCCCGGTCAATCTCTTTCCCTCAACTGGTGAAGCGAAAATCCAAACCCAAATCGAACATCACCTGCCTGTCCTCCTACAACAACAACAACACAACACCAACCCCAGCCACGGATCGGTTAATCTCGGCCGTCGCATACACTCTCCCTTTCTTCAACTCCCTCCAGTACGGGCGTTACCTCTTCTTCCAGTTCCCCAAATTGGGGCTTCTCTTCGAGCCCTTAATCCCGTTATTGAGCCTCTACAGGTCGATGCCCTACTCGAGCTTCGTGGCCTTCTTCGCCCTCTATCTGGGAGTTGTCAGAAACCCTAGCTTCAGCCACTATGTGAGGTTCAACGCGATGCAGGCGGTGACCTTGGACGTGCTGTTGGTTCTGCCCCTGCTCATCCAGAGGATATTCAGTCCGGGTCGGGCCGGATTGGGGTATAAGCTGATGGTTTGGGGGCATAATGGTATTTTCGTATTTAGCGTGTTCTGCTTTGTGTATAGTGTGGTGAGTTCCATTTTGGGTCGTACTCCCTACTTGCCCTTTGTTGCTGATGCCGCTGCCAGGCAGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0016020 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TIC20

Protein Analysis

221

Amino Acids

24.5

Weight (kDa)

10.09

Isoelectric Point (pI)

38.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017208)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47840
fragaria_vesca	FvH4_6g00330
malus_domestica	MD12G1263500.v1.1
prunus_persica	Prupe.6G362900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0447631
rosa_laevigata	RLG00000025982
rosa_multiflora	Rmu_sc0003550.1_g000002
rosa_roxburghii	Rroxscaffold_6G00425840
rosa_rugosa	Rorug02G0603800
rosa_samantha	Rh3BG003400 Rh3CG003700 Rh3DG003700
rosa_wichuraiana	Rw3G000280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	173
Acc36I	ACCTGC	1 cut(s)	173
AccB1I	GGYRCC	1 cut(s)	100
AccII	CGCG	1 cut(s)	440
AciI	CCGC	3 cut(s)	33, 449, 645
AclWI	GGATC	1 cut(s)	222
AcoI	YGGCCR	1 cut(s)	228
AcuI	CTGAAG	1 cut(s)	400
AcyI	GRCGYC	1 cut(s)	101
AdeI	CACNNNGTG	1 cut(s)	427
AfaI	GTAC	2 cut(s)	269, 616
AfiI	CCNNNNNNNGG	9 cut(s)	127, 211, 216, 301, 302, 303, 391, 522, 651
AgsI	TTSAA	2 cut(s)	256, 436
AjiI	CACGTC	1 cut(s)	463
AjnI	CCWGG	2 cut(s)	93, 650
AluBI	AGCT	5 cut(s)	17, 366, 414, 532, 658
AluI	AGCT	5 cut(s)	17, 366, 414, 532, 658
AlwI	GGATC	1 cut(s)	222
Ama87I	CYCGRG	1 cut(s)	361
AoxI	GGCC	4 cut(s)	3, 228, 372, 513
ApeKI	GCWGC	2 cut(s)	647, 655
AspLEI	GCGC	1 cut(s)	103
AspS9I	GGNCC	1 cut(s)	513
AsuC2I	CCSGG	2 cut(s)	106, 507
AsuHPI	GGTGA	4 cut(s)	142, 154, 463, 607
AvaI	CYCGRG	1 cut(s)	361
BanI	GGYRCC	1 cut(s)	100
BanII	GRGCYC	1 cut(s)	321
BbvI	GCAGC	1 cut(s)	634
BccI	CCATC	1 cut(s)	529
BceAI	ACGGC	1 cut(s)	215
BciT130I	CCWGG	2 cut(s)	95, 652
BcnI	CCSGG	2 cut(s)	106, 507
BfaI	CTAG	1 cut(s)	411
BfmI	CTRYAG	1 cut(s)	343
BfoI	RGCGCY	1 cut(s)	104
BfuAI	ACCTGC	1 cut(s)	173
BisI	GCNGC	3 cut(s)	645, 648, 656
BlsI	GCNGC	3 cut(s)	646, 649, 657
Bme1390I	CCNGG	4 cut(s)	95, 106, 507, 652
BmeT110I	CYCGRG	1 cut(s)	361
BmgBI	CACGTC	1 cut(s)	463
BmgT120I	GGNCC	1 cut(s)	513
BmiI	GGNNCC	1 cut(s)	102
BmrFI	CCNGG	4 cut(s)	95, 106, 507, 652
BmsI	GCATC	3 cut(s)	342, 432, 631
BpmI	CTGGAG	1 cut(s)	248
BpuMI	CCSGG	2 cut(s)	106, 507
BsaHI	GRCGYC	1 cut(s)	101
BsaJI	CCNNGG	4 cut(s)	93, 104, 210, 456
Bsc4I	CCNNNNNNNGG	9 cut(s)	127, 211, 216, 301, 302, 303, 391, 522, 651
Bse1I	ACTGG	3 cut(s)	132, 265, 289
BseBI	CCWGG	2 cut(s)	95, 652
BseDI	CCNNGG	4 cut(s)	93, 104, 210, 456
BseGI	GGATG	1 cut(s)	486
BseLI	CCNNNNNNNGG	9 cut(s)	127, 211, 216, 301, 302, 303, 391, 522, 651
BseNI	ACTGG	3 cut(s)	132, 265, 289
BseRI	GAGGAG	2 cut(s)	11, 64
BseX3I	CGGCCG	1 cut(s)	228
BseXI	GCAGC	1 cut(s)	634
BseYI	CCCAGC	1 cut(s)	205
Bsh1236I	CGCG	1 cut(s)	440
Bsh1285I	CGRYCG	1 cut(s)	231
BshFI	GGCC	4 cut(s)	5, 230, 374, 515
BshNI	GGYRCC	1 cut(s)	100
BsiEI	CGRYCG	1 cut(s)	231
BsiHKCI	CYCGRG	1 cut(s)	361
BsiSI	CCGG	3 cut(s)	106, 506, 516
BslI	CCNNNNNNNGG	9 cut(s)	127, 211, 216, 301, 302, 303, 391, 522, 651
BsnI	GGCC	4 cut(s)	5, 230, 374, 515
BsoBI	CYCGRG	1 cut(s)	361
Bsp1286I	GDGCHC	1 cut(s)	321
Bsp143I	GATC	1 cut(s)	214
BspACI	CCGC	3 cut(s)	33, 449, 645
BspANI	GGCC	4 cut(s)	5, 230, 374, 515
BspFNI	CGCG	1 cut(s)	440
BspLI	GGNNCC	1 cut(s)	102
BspMI	ACCTGC	1 cut(s)	173
BspPI	GGATC	1 cut(s)	222
BspT107I	GGYRCC	1 cut(s)	100
BsrI	ACTGG	3 cut(s)	132, 265, 289
BssECI	CCNNGG	4 cut(s)	93, 104, 210, 456
BssMI	GATC	1 cut(s)	214
BssNI	GRCGYC	1 cut(s)	101
BssT1I	CCWWGG	1 cut(s)	456
Bst2UI	CCWGG	2 cut(s)	95, 652
Bst6I	CTCTTC	2 cut(s)	287, 317
BstACI	GRCGYC	1 cut(s)	101
BstC8I	GCNNGC	1 cut(s)	447
BstDSI	CCRYGG	1 cut(s)	210
BstEII	GGTNACC	1 cut(s)	451
BstF5I	GGATG	1 cut(s)	486
BstFNI	CGCG	1 cut(s)	440
BstH2I	RGCGCY	1 cut(s)	104
BstHHI	GCGC	1 cut(s)	103
BstKTI	GATC	1 cut(s)	217
BstMBI	GATC	1 cut(s)	214
BstMCI	CGRYCG	1 cut(s)	231
BstMWI	GCNNNNNNNGC	4 cut(s)	380, 446, 576, 644
BstNI	CCWGG	2 cut(s)	95, 652
BstPI	GGTNACC	1 cut(s)	451
BstSCI	CCNGG	4 cut(s)	93, 104, 505, 650
BstSFI	CTRYAG	1 cut(s)	343
BstUI	CGCG	1 cut(s)	440
BstV1I	GCAGC	1 cut(s)	634
BstZI	CGGCCG	1 cut(s)	228
BsuRI	GGCC	4 cut(s)	5, 230, 374, 515
BtgI	CCRYGG	1 cut(s)	210
BtgZI	GCGATG	1 cut(s)	455
BtrI	CACGTC	1 cut(s)	463
BtsCI	GGATG	1 cut(s)	486
BveI	ACCTGC	1 cut(s)	173
Cac8I	GCNNGC	1 cut(s)	447
CfoI	GCGC	1 cut(s)	103
Cfr13I	GGNCC	1 cut(s)	513
Csp6I	GTAC	2 cut(s)	268, 615
CspCI	CAANNNNNGTGG	2 cut(s)	78, 113
CviQI	GTAC	2 cut(s)	268, 615
DinI	GGCGCC	1 cut(s)	102
DpnI	GATC	1 cut(s)	216
DpnII	GATC	1 cut(s)	214
DraIII	CACNNNGTG	1 cut(s)	427
EaeI	YGGCCR	1 cut(s)	228
EagI	CGGCCG	1 cut(s)	228
Eam1104I	CTCTTC	2 cut(s)	287, 317
EarI	CTCTTC	2 cut(s)	287, 317
EciI	GGCGGA	1 cut(s)	22
EclXI	CGGCCG	1 cut(s)	228
Eco130I	CCWWGG	1 cut(s)	456
Eco24I	GRGCYC	1 cut(s)	321
Eco52I	CGGCCG	1 cut(s)	228
Eco57I	CTGAAG	1 cut(s)	400
Eco88I	CYCGRG	1 cut(s)	361
Eco91I	GGTNACC	1 cut(s)	451
EcoO65I	GGTNACC	1 cut(s)	451
EcoRII	CCWGG	2 cut(s)	93, 650
EcoT14I	CCWWGG	1 cut(s)	456
EcoT38I	GRGCYC	1 cut(s)	321
EgeI	GGCGCC	1 cut(s)	102
EheI	GGCGCC	1 cut(s)	102
ErhI	CCWWGG	1 cut(s)	456
FaiI	YATR	7 cut(s)	14, 66, 238, 426, 528, 549, 588
Fnu4HI	GCNGC	3 cut(s)	645, 648, 656
FokI	GGATG	1 cut(s)	473
FriOI	GRGCYC	1 cut(s)	321
Fsp4HI	GCNGC	3 cut(s)	645, 648, 656
FspBI	CTAG	1 cut(s)	411
GlaI	GCGC	1 cut(s)	102
GluI	GCNGC	3 cut(s)	645, 648, 656
GsaI	CCCAGC	1 cut(s)	209
GsuI	CTGGAG	1 cut(s)	248
HaeII	RGCGCY	1 cut(s)	104
HaeIII	GGCC	4 cut(s)	5, 230, 374, 515
HapII	CCGG	3 cut(s)	106, 506, 516
HhaI	GCGC	1 cut(s)	103
Hin1I	GRCGYC	1 cut(s)	101
Hin6I	GCGC	1 cut(s)	101
HinP1I	GCGC	1 cut(s)	101
HincII	GTYRAC	1 cut(s)	90
HindII	GTYRAC	1 cut(s)	90
HpaII	CCGG	3 cut(s)	106, 506, 516
HphI	GGTGA	4 cut(s)	142, 154, 463, 607
Hpy166II	GTNNAC	1 cut(s)	90
Hpy188I	TCNGA	1 cut(s)	404
Hpy188III	TCNNGA	1 cut(s)	490
Hpy8I	GTNNAC	1 cut(s)	90
Hpy99I	CGWCG	2 cut(s)	88, 236
HpyAV	CCTTC	2 cut(s)	88, 385
HpyCH4IV	ACGT	1 cut(s)	462
HpyCH4V	TGCA	1 cut(s)	445
HpyF10VI	GCNNNNNNNGC	4 cut(s)	380, 446, 576, 644
HpySE526I	ACGT	1 cut(s)	462
Hsp92I	GRCGYC	1 cut(s)	101
HspAI	GCGC	1 cut(s)	101
KasI	GGCGCC	1 cut(s)	100
Kzo9I	GATC	1 cut(s)	214
LmnI	GCTCC	1 cut(s)	77
Lsp1109I	GCAGC	1 cut(s)	634
LweI	GCATC	3 cut(s)	342, 432, 631
MaeI	CTAG	1 cut(s)	411
MaeII	ACGT	1 cut(s)	462
MaeIII	GTNAC	2 cut(s)	275, 451
MalI	GATC	1 cut(s)	216
MboI	GATC	1 cut(s)	214
MboII	GAAGA	5 cut(s)	244, 274, 277, 304, 370
MhlI	GDGCHC	1 cut(s)	321
MluCI	AATT	1 cut(s)	299
Mly113I	GGCGCC	1 cut(s)	101
MseI	TTAA	3 cut(s)	221, 323, 661
MspA1I	CMGCKG	1 cut(s)	647
MspI	CCGG	3 cut(s)	106, 506, 516
MspR9I	CCNGG	4 cut(s)	95, 106, 507, 652
MvaI	CCWGG	2 cut(s)	95, 652
MvnI	CGCG	1 cut(s)	440
MwoI	GCNNNNNNNGC	4 cut(s)	380, 446, 576, 644
NarI	GGCGCC	1 cut(s)	101
NciI	CCSGG	2 cut(s)	106, 507
NdeII	GATC	1 cut(s)	214
NlaIV	GGNNCC	1 cut(s)	102
NmeAIII	GCCGAG	1 cut(s)	206
NmuCI	GTSAC	1 cut(s)	451
PaeR7I	CTCGAG	1 cut(s)	361
PaqCI	CACCTGC	1 cut(s)	173
PcsI	WCGNNNNNNNCGW	1 cut(s)	567
PkrI	GCNGC	3 cut(s)	646, 649, 657
PluTI	GGCGCC	1 cut(s)	104
Psp6I	CCWGG	2 cut(s)	93, 650
PspEI	GGTNACC	1 cut(s)	451
PspFI	CCCAGC	1 cut(s)	205
PspGI	CCWGG	2 cut(s)	93, 650
PspN4I	GGNNCC	1 cut(s)	102
PspPI	GGNCC	1 cut(s)	513
PspXI	VCTCGAGB	1 cut(s)	361
RsaI	GTAC	2 cut(s)	269, 616
RsaNI	GTAC	2 cut(s)	268, 615
SaqAI	TTAA	3 cut(s)	221, 323, 661
SatI	GCNGC	3 cut(s)	645, 648, 656
Sau3AI	GATC	1 cut(s)	214
Sau96I	GGNCC	1 cut(s)	513
ScrFI	CCNGG	4 cut(s)	95, 106, 507, 652
SduI	GDGCHC	1 cut(s)	321
SfaNI	GCATC	3 cut(s)	342, 432, 631
SfcI	CTRYAG	1 cut(s)	343
SfoI	GGCGCC	1 cut(s)	102
Sfr274I	CTCGAG	1 cut(s)	361
SlaI	CTCGAG	1 cut(s)	361
SmlI	CTYRAG	1 cut(s)	361
SmoI	CTYRAG	1 cut(s)	361
Sse9I	AATT	1 cut(s)	299
SsiI	CCGC	3 cut(s)	33, 449, 645
SspDI	GGCGCC	1 cut(s)	100
SspMI	CTAG	1 cut(s)	411
StyD4I	CCNGG	4 cut(s)	93, 104, 505, 650
StyI	CCWWGG	1 cut(s)	456
TaiI	ACGT	1 cut(s)	465
TaqI	TCGA	4 cut(s)	155, 315, 350, 362
TasI	AATT	1 cut(s)	299
TauI	GCSGC	1 cut(s)	647
Tru1I	TTAA	3 cut(s)	221, 323, 661
Tru9I	TTAA	3 cut(s)	221, 323, 661
TseFI	GTSAC	1 cut(s)	451
TseI	GCWGC	2 cut(s)	647, 655
Tsp45I	GTSAC	1 cut(s)	451
TspGWI	ACGGA	1 cut(s)	227
XhoI	CTCGAG	1 cut(s)	361
XspI	CTAG	1 cut(s)	411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.