Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003550.1

Orthogroup ID

OG0017208

Physical Location & Seq

Genomic Coordinates Forward (+)

13595 .. 14224

Gene Structure 630 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003550.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

atggcctccatccatgtcctccacggcctgtcgccgactactcccaaaaccctaaaaatgatgcccaaattccactcctcgttcccgtccaccatcgccaacaggtcgctctctttccccaaacccaaatcgaggaccatcacttgcatgtcctcctccggcacgacgacacccgccacagatcggttaatctccgccgtctcttacaccctccccttcttcaattccctccagtacggtcgctacctgttcttccagttccccaaactgggcctcctcttcgagccgctgcttcccttgttgggcctctaccggtccatcccctactcgagcttcgtcgccttcttcgccctctatttgggtgtggtcagaaaccctagcttcagccactatgtcaggttcaatgctatgcaggccgtcaccttggacgtcctcttggtcctcccgctcctcattcagaggatcttcagtccgggtcaggccggtctgggctacaagctcatggtctgggggcacaatggtattttcgtgttcagtgttctctgctttgtttatgggttggttagttcaattttgggtaggactccttatttgccctttgttgctgatgccgccggccgccagctctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0016020 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TIC20

Protein Analysis

209

Amino Acids

23.22

Weight (kDa)

10.15

Isoelectric Point (pI)

41.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017208)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47840
fragaria_vesca	FvH4_6g00330
malus_domestica	MD12G1263500.v1.1
prunus_persica	Prupe.6G362900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0447631
rosa_laevigata	RLG00000025982
rosa_multiflora	Rmu_sc0003550.1_g000002
rosa_roxburghii	Rroxscaffold_6G00425840
rosa_rugosa	Rorug02G0603800
rosa_samantha	Rh3BG003400 Rh3CG003700 Rh3DG003700
rosa_wichuraiana	Rw3G000280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	432
AccBSI	CCGCTC	1 cut(s)	448
AciI	CCGC	6 cut(s)	174, 195, 287, 446, 612, 619
AclWI	GGATC	1 cut(s)	470
AcoI	YGGCCR	1 cut(s)	616
AcsI	RAATTY	1 cut(s)	68
AcuI	CTGAAG	2 cut(s)	367, 451
AcyI	GRCGYC	1 cut(s)	429
AfaI	GTAC	1 cut(s)	236
AfiI	CCNNNNNNNGG	6 cut(s)	132, 183, 268, 269, 302, 358
AgeI	ACCGGT	1 cut(s)	312
AgsI	TTSAA	3 cut(s)	223, 403, 570
AluBI	AGCT	4 cut(s)	333, 381, 499, 625
AluI	AGCT	4 cut(s)	333, 381, 499, 625
Alw26I	GTCTC	1 cut(s)	205
AlwI	GGATC	1 cut(s)	470
Ama87I	CYCGRG	1 cut(s)	328
AoxI	GGCC	7 cut(s)	3, 25, 271, 304, 414, 480, 616
ApeKI	GCWGC	1 cut(s)	289
ApoI	RAATTY	1 cut(s)	68
ArsI	GACNNNNNNTTYG	2 cut(s)	574, 606
AsiGI	ACCGGT	1 cut(s)	312
AspS9I	GGNCC	5 cut(s)	135, 271, 304, 315, 439
AsuC2I	CCSGG	1 cut(s)	474
AsuHPI	GGTGA	1 cut(s)	412
AvaI	CYCGRG	1 cut(s)	328
AvaII	GGWCC	3 cut(s)	135, 315, 439
BaeGI	GKGCMC	1 cut(s)	516
BbvI	GCAGC	1 cut(s)	276
BccI	CCATC	4 cut(s)	17, 101, 146, 326
BceAI	ACGGC	3 cut(s)	40, 182, 401
BcnI	CCSGG	1 cut(s)	474
BcoDI	GTCTC	1 cut(s)	205
BfaI	CTAG	1 cut(s)	378
BisI	GCNGC	4 cut(s)	287, 290, 612, 619
BlsI	GCNGC	4 cut(s)	288, 291, 613, 620
Bme1390I	CCNGG	1 cut(s)	474
Bme18I	GGWCC	3 cut(s)	135, 315, 439
BmeT110I	CYCGRG	1 cut(s)	328
BmgT120I	GGNCC	5 cut(s)	135, 271, 304, 315, 439
BmrFI	CCNGG	1 cut(s)	474
BmrI	ACTGGG	1 cut(s)	278
BmsI	GCATC	2 cut(s)	51, 598
BmuI	ACTGGG	1 cut(s)	278
BpmI	CTGGAG	1 cut(s)	215
BpuMI	CCSGG	1 cut(s)	474
BsaHI	GRCGYC	1 cut(s)	429
BsaJI	CCNNGG	2 cut(s)	22, 423
BsaWI	WCCGGW	1 cut(s)	312
BsaXI	ACNNNNNCTCC	2 cut(s)	258, 288
Bsc4I	CCNNNNNNNGG	6 cut(s)	132, 183, 268, 269, 302, 358
Bse118I	RCCGGY	3 cut(s)	312, 482, 614
Bse1I	ACTGG	3 cut(s)	232, 256, 273
BseDI	CCNNGG	2 cut(s)	22, 423
BseGI	GGATG	2 cut(s)	9, 318
BseLI	CCNNNNNNNGG	6 cut(s)	132, 183, 268, 269, 302, 358
BseNI	ACTGG	3 cut(s)	232, 256, 273
BseRI	GAGGAG	4 cut(s)	67, 145, 266, 440
BseSI	GKGCMC	1 cut(s)	516
BseX3I	CGGCCG	1 cut(s)	616
BseXI	GCAGC	1 cut(s)	276
Bsh1285I	CGRYCG	2 cut(s)	241, 619
BshFI	GGCC	7 cut(s)	5, 27, 273, 306, 416, 482, 618
BshTI	ACCGGT	1 cut(s)	312
BsiEI	CGRYCG	2 cut(s)	241, 619
BsiHKCI	CYCGRG	1 cut(s)	328
BsiSI	CCGG	5 cut(s)	159, 313, 473, 483, 615
BslI	CCNNNNNNNGG	6 cut(s)	132, 183, 268, 269, 302, 358
BsmAI	GTCTC	1 cut(s)	205
BsmBI	CGTCTC	1 cut(s)	205
BsnI	GGCC	7 cut(s)	5, 27, 273, 306, 416, 482, 618
BsoBI	CYCGRG	1 cut(s)	328
Bsp1286I	GDGCHC	1 cut(s)	516
Bsp143I	GATC	2 cut(s)	181, 462
BspACI	CCGC	6 cut(s)	174, 195, 287, 446, 612, 619
BspANI	GGCC	7 cut(s)	5, 27, 273, 306, 416, 482, 618
BspPI	GGATC	1 cut(s)	470
BsrBI	CCGCTC	1 cut(s)	448
BsrFI	RCCGGY	3 cut(s)	312, 482, 614
BsrI	ACTGG	3 cut(s)	232, 256, 273
BssAI	RCCGGY	3 cut(s)	312, 482, 614
BssECI	CCNNGG	2 cut(s)	22, 423
BssMI	GATC	2 cut(s)	181, 462
BssNI	GRCGYC	1 cut(s)	429
BssT1I	CCWWGG	1 cut(s)	423
Bst4CI	ACNGT	1 cut(s)	239
Bst6I	CTCTTC	1 cut(s)	284
BstACI	GRCGYC	1 cut(s)	429
BstC8I	GCNNGC	3 cut(s)	414, 616, 623
BstDSI	CCRYGG	1 cut(s)	22
BstF5I	GGATG	2 cut(s)	9, 318
BstKTI	GATC	2 cut(s)	184, 465
BstMAI	GTCTC	1 cut(s)	205
BstMBI	GATC	2 cut(s)	181, 462
BstMCI	CGRYCG	2 cut(s)	241, 619
BstMWI	GCNNNNNNNGC	3 cut(s)	347, 413, 611
BstNSI	RCATGY	1 cut(s)	151
BstSCI	CCNGG	1 cut(s)	472
BstSLI	GKGCMC	1 cut(s)	516
BstV1I	GCAGC	1 cut(s)	276
BstX2I	RGATCY	1 cut(s)	462
BstYI	RGATCY	1 cut(s)	462
BstZI	CGGCCG	1 cut(s)	616
BsuRI	GGCC	7 cut(s)	5, 27, 273, 306, 416, 482, 618
BtgI	CCRYGG	1 cut(s)	22
BtgZI	GCGATG	1 cut(s)	79
BtsCI	GGATG	2 cut(s)	9, 318
BtsIMutI	CAGTG	1 cut(s)	541
Cac8I	GCNNGC	3 cut(s)	414, 616, 623
Cfr10I	RCCGGY	3 cut(s)	312, 482, 614
Cfr13I	GGNCC	5 cut(s)	135, 271, 304, 315, 439
Csp6I	GTAC	1 cut(s)	235
CspAI	ACCGGT	1 cut(s)	312
CviAII	CATG	3 cut(s)	14, 148, 502
CviQI	GTAC	1 cut(s)	235
DpnI	GATC	2 cut(s)	183, 464
DpnII	GATC	2 cut(s)	181, 462
EaeI	YGGCCR	1 cut(s)	616
EagI	CGGCCG	1 cut(s)	616
Eam1104I	CTCTTC	1 cut(s)	284
EarI	CTCTTC	1 cut(s)	284
EciI	GGCGGA	1 cut(s)	184
EclXI	CGGCCG	1 cut(s)	616
Eco130I	CCWWGG	1 cut(s)	423
Eco47I	GGWCC	3 cut(s)	135, 315, 439
Eco52I	CGGCCG	1 cut(s)	616
Eco57I	CTGAAG	2 cut(s)	367, 451
Eco88I	CYCGRG	1 cut(s)	328
EcoT14I	CCWWGG	1 cut(s)	423
ErhI	CCWWGG	1 cut(s)	423
Esp3I	CGTCTC	1 cut(s)	205
FaeI	CATG	3 cut(s)	17, 151, 505
FaiI	YATR	6 cut(s)	15, 149, 393, 410, 503, 555
FatI	CATG	3 cut(s)	13, 147, 501
FauI	CCCGC	2 cut(s)	181, 453
Fnu4HI	GCNGC	4 cut(s)	287, 290, 612, 619
FokI	GGATG	1 cut(s)	305
Fsp4HI	GCNGC	4 cut(s)	287, 290, 612, 619
FspBI	CTAG	1 cut(s)	378
GluI	GCNGC	4 cut(s)	287, 290, 612, 619
GsuI	CTGGAG	1 cut(s)	215
HaeIII	GGCC	7 cut(s)	5, 27, 273, 306, 416, 482, 618
HapII	CCGG	5 cut(s)	159, 313, 473, 483, 615
Hin1I	GRCGYC	1 cut(s)	429
Hin1II	CATG	3 cut(s)	17, 151, 505
HinfI	GANTC	1 cut(s)	583
HpaII	CCGG	5 cut(s)	159, 313, 473, 483, 615
HphI	GGTGA	1 cut(s)	412
Hpy166II	GTNNAC	1 cut(s)	90
Hpy188I	TCNGA	3 cut(s)	371, 459, 629
Hpy8I	GTNNAC	1 cut(s)	90
Hpy99I	CGWCG	2 cut(s)	169, 341
HpyAV	CCTTC	2 cut(s)	226, 352
HpyCH4III	ACNGT	1 cut(s)	239
HpyCH4IV	ACGT	1 cut(s)	429
HpyCH4V	TGCA	2 cut(s)	147, 412
HpyF10VI	GCNNNNNNNGC	3 cut(s)	347, 413, 611
HpySE526I	ACGT	1 cut(s)	429
Hsp92I	GRCGYC	1 cut(s)	429
Hsp92II	CATG	3 cut(s)	17, 151, 505
KroI	GCCGGC	1 cut(s)	614
KroNI	GCCGGC	1 cut(s)	616
Kzo9I	GATC	2 cut(s)	181, 462
LmnI	GCTCC	1 cut(s)	453
Lsp1109I	GCAGC	1 cut(s)	276
LweI	GCATC	2 cut(s)	51, 598
MaeI	CTAG	1 cut(s)	378
MaeII	ACGT	1 cut(s)	429
MaeIII	GTNAC	1 cut(s)	418
MalI	GATC	2 cut(s)	183, 464
MbiI	CCGCTC	1 cut(s)	448
MboI	GATC	2 cut(s)	181, 462
MboII	GAAGA	5 cut(s)	211, 244, 271, 337, 457
MflI	RGATCY	1 cut(s)	462
MhlI	GDGCHC	1 cut(s)	516
MluCI	AATT	3 cut(s)	68, 223, 570
MlyI	GAGTC	1 cut(s)	577
MroNI	GCCGGC	1 cut(s)	614
MseI	TTAA	1 cut(s)	188
MslI	CAYNNNNRTG	1 cut(s)	146
MspA1I	CMGCKG	1 cut(s)	289
MspI	CCGG	5 cut(s)	159, 313, 473, 483, 615
MspR9I	CCNGG	1 cut(s)	474
MwoI	GCNNNNNNNGC	3 cut(s)	347, 413, 611
NaeI	GCCGGC	1 cut(s)	616
NciI	CCSGG	1 cut(s)	474
NdeII	GATC	2 cut(s)	181, 462
NgoMIV	GCCGGC	1 cut(s)	614
NlaIII	CATG	3 cut(s)	17, 151, 505
NmuCI	GTSAC	1 cut(s)	418
NspI	RCATGY	1 cut(s)	151
PaeR7I	CTCGAG	1 cut(s)	328
PdiI	GCCGGC	1 cut(s)	616
PinAI	ACCGGT	1 cut(s)	312
PkrI	GCNGC	4 cut(s)	288, 291, 613, 620
PleI	GAGTC	1 cut(s)	577
PpsI	GAGTC	1 cut(s)	577
PspPI	GGNCC	5 cut(s)	135, 271, 304, 315, 439
PspXI	VCTCGAGB	1 cut(s)	328
PsuI	RGATCY	1 cut(s)	462
RsaI	GTAC	1 cut(s)	236
RsaNI	GTAC	1 cut(s)	235
RseI	CAYNNNNRTG	1 cut(s)	146
SaqAI	TTAA	1 cut(s)	188
SatI	GCNGC	4 cut(s)	287, 290, 612, 619
Sau3AI	GATC	2 cut(s)	181, 462
Sau96I	GGNCC	5 cut(s)	135, 271, 304, 315, 439
SchI	GAGTC	1 cut(s)	577
ScrFI	CCNGG	1 cut(s)	474
SduI	GDGCHC	1 cut(s)	516
SetI	ASST	9 cut(s)	107, 249, 335, 383, 401, 425, 432, 501, 627
SfaNI	GCATC	2 cut(s)	51, 598
Sfr274I	CTCGAG	1 cut(s)	328
SinI	GGWCC	3 cut(s)	135, 315, 439
SlaI	CTCGAG	1 cut(s)	328
SmiMI	CAYNNNNRTG	1 cut(s)	146
SmlI	CTYRAG	1 cut(s)	328
SmoI	CTYRAG	1 cut(s)	328
Sse9I	AATT	3 cut(s)	68, 223, 570
SsiI	CCGC	6 cut(s)	174, 195, 287, 446, 612, 619
SspMI	CTAG	1 cut(s)	378
StyD4I	CCNGG	1 cut(s)	472
StyI	CCWWGG	1 cut(s)	423
TaaI	ACNGT	1 cut(s)	239
TaiI	ACGT	1 cut(s)	432
TaqI	TCGA	3 cut(s)	131, 282, 329
TasI	AATT	3 cut(s)	68, 223, 570
TauI	GCSGC	3 cut(s)	289, 614, 621
Tru1I	TTAA	1 cut(s)	188
Tru9I	TTAA	1 cut(s)	188
TscAI	CASTG	1 cut(s)	541
TseFI	GTSAC	1 cut(s)	418
TseI	GCWGC	1 cut(s)	289
Tsp45I	GTSAC	1 cut(s)	418
TspRI	CASTG	1 cut(s)	541
VpaK11BI	GGWCC	3 cut(s)	135, 315, 439
XapI	RAATTY	1 cut(s)	68
XceI	RCATGY	1 cut(s)	151
XhoI	CTCGAG	1 cut(s)	328
XspI	CTAG	1 cut(s)	378
ZraI	GACGTC	1 cut(s)	430

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.