Prupe.7G048800_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0018460
Physical Location & Seq
Forward (+)
8585431 .. 8585975
545 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G048800.1

Sequence Viewer

Length: 213 bp
ATGGCGGGTCTTCAATACAACTTCTTTCCCACTGATTTCTTTTACCCTCGCACCGCTCCACAGGCCGCCAACAAACCAGTTGTTCTTCCCCTCCAGACCACCAAACTAGATCATGTAGCCGCCAGCGATCTCGAGCAGCTCAAAGCTTTGGCCATTCAACGCCGCGGAGTTCAAGCCGTCCAGGTTGCCAAATCTCCCCCGATGCATGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

71

Amino Acids

7.69

Weight (kDa)

9.69

Isoelectric Point (pI)

58.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018460)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g24961
prunus_persica Prupe.7G048800_v2.0.a1 Prupe.7G048900_v2.0.a1
pyrus_communis pycom07g14980 pycom12g07470
rosa_chinensis RchiOBHm_Chr2g0124691
rosa_roxburghii Rroxscaffold_2G00119750
rosa_samantha Rh2AG310800 Rh2BG319400 Rh2CG298100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 56
AccII CGCG 1 cut(s) 165
AciI CCGC 6 cut(s) 5, 54, 66, 120, 163, 165
AcoI YGGCCR 1 cut(s) 150
AfiI CCNNNNNNNGG 1 cut(s) 206
AgsI TTSAA 3 cut(s) 14, 158, 173
AjnI CCWGG 1 cut(s) 180
AluBI AGCT 2 cut(s) 139, 146
AluI AGCT 2 cut(s) 139, 146
Ama87I CYCGRG 1 cut(s) 131
AoxI GGCC 2 cut(s) 63, 150
ApeKI GCWGC 1 cut(s) 136
AvaI CYCGRG 1 cut(s) 131
BalI TGGCCA 1 cut(s) 152
BbsI GAAGAC 1 cut(s) 2
BbvI GCAGC 1 cut(s) 148
BceAI ACGGC 1 cut(s) 161
BciT130I CCWGG 1 cut(s) 182
BfaI CTAG 1 cut(s) 107
BisI GCNGC 4 cut(s) 66, 120, 137, 163
BlsI GCNGC 4 cut(s) 67, 121, 138, 164
Bme1390I CCNGG 1 cut(s) 182
BmeT110I CYCGRG 1 cut(s) 131
BmrFI CCNGG 1 cut(s) 182
BmsI GCATC 1 cut(s) 192
BpiI GAAGAC 1 cut(s) 2
BpmI CTGGAG 1 cut(s) 77
BsaJI CCNNGG 1 cut(s) 163
Bsc4I CCNNNNNNNGG 1 cut(s) 206
Bse1I ACTGG 1 cut(s) 77
BseBI CCWGG 1 cut(s) 182
BseDI CCNNGG 1 cut(s) 163
BseLI CCNNNNNNNGG 1 cut(s) 206
BseNI ACTGG 1 cut(s) 77
BseXI GCAGC 1 cut(s) 148
Bsh1236I CGCG 1 cut(s) 165
BshFI GGCC 2 cut(s) 65, 152
BsiHKCI CYCGRG 1 cut(s) 131
BslI CCNNNNNNNGG 1 cut(s) 206
BsnI GGCC 2 cut(s) 65, 152
BsoBI CYCGRG 1 cut(s) 131
Bsp143I GATC 2 cut(s) 109, 127
BspACI CCGC 6 cut(s) 5, 54, 66, 120, 163, 165
BspANI GGCC 2 cut(s) 65, 152
BspFNI CGCG 1 cut(s) 165
BsrBI CCGCTC 1 cut(s) 56
BsrI ACTGG 1 cut(s) 77
BssECI CCNNGG 1 cut(s) 163
BssMI GATC 2 cut(s) 109, 127
Bst2UI CCWGG 1 cut(s) 182
BstC8I GCNNGC 1 cut(s) 124
BstDSI CCRYGG 1 cut(s) 163
BstFNI CGCG 1 cut(s) 165
BstKTI GATC 2 cut(s) 112, 130
BstMBI GATC 2 cut(s) 109, 127
BstMWI GCNNNNNNNGC 1 cut(s) 62
BstNI CCWGG 1 cut(s) 182
BstSCI CCNGG 1 cut(s) 180
BstUI CGCG 1 cut(s) 165
BstV1I GCAGC 1 cut(s) 148
BstV2I GAAGAC 1 cut(s) 2
BsuRI GGCC 2 cut(s) 65, 152
BtgI CCRYGG 1 cut(s) 163
BtsIMutI CAGTG 1 cut(s) 30
Cac8I GCNNGC 1 cut(s) 124
Cfr42I CCGCGG 1 cut(s) 166
CviAII CATG 2 cut(s) 113, 206
CviJI RGCY 6 cut(s) 65, 119, 139, 146, 152, 176
CviKI_1 RGCY 6 cut(s) 65, 119, 139, 146, 152, 176
DpnI GATC 2 cut(s) 111, 129
DpnII GATC 2 cut(s) 109, 127
EaeI YGGCCR 1 cut(s) 150
Eco88I CYCGRG 1 cut(s) 131
EcoRII CCWGG 1 cut(s) 180
EcoT22I ATGCAT 1 cut(s) 207
FaeI CATG 2 cut(s) 116, 209
FaiI YATR 2 cut(s) 114, 207
FatI CATG 2 cut(s) 112, 205
Fnu4HI GCNGC 4 cut(s) 66, 120, 137, 163
Fsp4HI GCNGC 4 cut(s) 66, 120, 137, 163
FspBI CTAG 1 cut(s) 107
GluI GCNGC 4 cut(s) 66, 120, 137, 163
GsuI CTGGAG 1 cut(s) 77
HaeIII GGCC 2 cut(s) 65, 152
Hin1II CATG 2 cut(s) 116, 209
HindIII AAGCTT 1 cut(s) 144
Hpy188III TCNNGA 2 cut(s) 94, 131
HpyCH4V TGCA 1 cut(s) 205
HpyF10VI GCNNNNNNNGC 1 cut(s) 62
Hsp92II CATG 2 cut(s) 116, 209
KspI CCGCGG 1 cut(s) 166
Kzo9I GATC 2 cut(s) 109, 127
LmnI GCTCC 1 cut(s) 61
LpnPI CCDG 6 cut(s) 47, 90, 107, 136, 167, 194
Lsp1109I GCAGC 1 cut(s) 148
LweI GCATC 1 cut(s) 192
MaeI CTAG 1 cut(s) 107
MalI GATC 2 cut(s) 111, 129
MbiI CCGCTC 1 cut(s) 56
MboI GATC 2 cut(s) 109, 127
MboII GAAGA 1 cut(s) 77
MlsI TGGCCA 1 cut(s) 152
MluNI TGGCCA 1 cut(s) 152
MnlI CCTC 2 cut(s) 57, 101
Mox20I TGGCCA 1 cut(s) 152
Mph1103I ATGCAT 1 cut(s) 207
MscI TGGCCA 1 cut(s) 152
Msp20I TGGCCA 1 cut(s) 152
MspA1I CMGCKG 1 cut(s) 165
MspR9I CCNGG 1 cut(s) 182
MvaI CCWGG 1 cut(s) 182
MvnI CGCG 1 cut(s) 165
MwoI GCNNNNNNNGC 1 cut(s) 62
NdeII GATC 2 cut(s) 109, 127
NlaIII CATG 2 cut(s) 116, 209
NsiI ATGCAT 1 cut(s) 207
PaeR7I CTCGAG 1 cut(s) 131
PkrI GCNGC 4 cut(s) 67, 121, 138, 164
Psp6I CCWGG 1 cut(s) 180
PspGI CCWGG 1 cut(s) 180
SacII CCGCGG 1 cut(s) 166
SatI GCNGC 4 cut(s) 66, 120, 137, 163
Sau3AI GATC 2 cut(s) 109, 127
ScrFI CCNGG 1 cut(s) 182
SetI ASST 3 cut(s) 141, 148, 186
SfaNI GCATC 1 cut(s) 192
Sfr274I CTCGAG 1 cut(s) 131
Sfr303I CCGCGG 1 cut(s) 166
SgrBI CCGCGG 1 cut(s) 166
SlaI CTCGAG 1 cut(s) 131
SmlI CTYRAG 1 cut(s) 131
SmoI CTYRAG 1 cut(s) 131
SsiI CCGC 6 cut(s) 5, 54, 66, 120, 163, 165
SspMI CTAG 1 cut(s) 107
StyD4I CCNGG 1 cut(s) 180
TaqI TCGA 1 cut(s) 132
TauI GCSGC 3 cut(s) 68, 122, 165
TscAI CASTG 1 cut(s) 37
TseI GCWGC 1 cut(s) 136
TspRI CASTG 1 cut(s) 37
XhoI CTCGAG 1 cut(s) 131
XspI CTAG 1 cut(s) 107
Zsp2I ATGCAT 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.