Rh2BG319400

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0018460
Physical Location & Seq
Reverse (-)
38093255 .. 38123581
30327 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG319400.1

Sequence Viewer

Length: 468 bp
ATGGCTTCTTTTTCACCATCATCAAAGCATGCAATAGTTCCATTGCTTCCAGTTTCGTACCAGCCCAATTCCATAAAATCCCAGAGCAATAACACTCCTAGGTTCAAGAATTCGTCGAGAGCTTTCTCTAGGGCATTGTTACGGCTTAGGAACAAGGTTCTGGAAGAGGATTTTCGGTCCAATAACTCTAATCATGTCCTCACTTCTTCACTTCGAAAATTGGAACATCATGCAGGCCTTCAGTACAACTTCTTCCCCACTGATTTCCTTTACCCTCGTCCACAGTTAGACGCCACTAATAAAGCAGCAGCCGCCACTGTGGCTCTTCCTCCCCTCCAAACCACCACCTGCTCCGCCGCCGATCTCCAACAGCTCAAAGCTCTCGTCATTCAAAACCGCGGTGTTCAAGTTATAGTCAAGAAAAGCACTGTTGCCAAATCTCCTCCTCTTCCTCCCTTGAATGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

155

Amino Acids

17.05

Weight (kDa)

10.48

Isoelectric Point (pI)

52.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018460)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g24961
prunus_persica Prupe.7G048800_v2.0.a1 Prupe.7G048900_v2.0.a1
pyrus_communis pycom07g14980 pycom12g07470
rosa_chinensis RchiOBHm_Chr2g0124691
rosa_roxburghii Rroxscaffold_2G00119750
rosa_samantha Rh2AG310800 Rh2BG319400 Rh2CG298100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 356
Acc36I ACCTGC 1 cut(s) 356
AccII CGCG 1 cut(s) 399
AciI CCGC 5 cut(s) 312, 354, 357, 397, 399
AcsI RAATTY 1 cut(s) 109
AcuI CTGAAG 1 cut(s) 224
AcyI GRCGYC 1 cut(s) 291
AfaI GTAC 2 cut(s) 59, 245
AfiI CCNNNNNNNGG 1 cut(s) 461
AgsI TTSAA 4 cut(s) 106, 392, 407, 460
AluBI AGCT 3 cut(s) 122, 373, 380
AluI AGCT 3 cut(s) 122, 373, 380
AoxI GGCC 1 cut(s) 235
ApeKI GCWGC 2 cut(s) 305, 308
ApoI RAATTY 1 cut(s) 109
ArsI GACNNNNNNTTYG 2 cut(s) 369, 401
AspA2I CCTAGG 1 cut(s) 98
AspS9I GGNCC 1 cut(s) 177
AsuHPI GGTGA 1 cut(s) 6
AsuII TTCGAA 1 cut(s) 214
AvaII GGWCC 1 cut(s) 177
AvrII CCTAGG 1 cut(s) 98
BarI GAAGNNNNNNTAC 2 cut(s) 236, 268
BbvI GCAGC 2 cut(s) 317, 320
BccI CCATC 1 cut(s) 25
BceAI ACGGC 1 cut(s) 158
BfaI CTAG 2 cut(s) 99, 129
BfuAI ACCTGC 1 cut(s) 356
BglI GCCNNNNNGGC 1 cut(s) 320
BisI GCNGC 4 cut(s) 306, 309, 312, 357
BlnI CCTAGG 1 cut(s) 98
BlsI GCNGC 4 cut(s) 307, 310, 313, 358
Bme18I GGWCC 1 cut(s) 177
BmgT120I GGNCC 1 cut(s) 177
Bpu10I CCTNAGC 1 cut(s) 146
Bpu14I TTCGAA 1 cut(s) 214
BsaHI GRCGYC 1 cut(s) 291
BsaJI CCNNGG 2 cut(s) 98, 397
Bsc4I CCNNNNNNNGG 1 cut(s) 461
Bse1I ACTGG 1 cut(s) 50
Bse3DI GCAATG 1 cut(s) 41
BseDI CCNNGG 2 cut(s) 98, 397
BseLI CCNNNNNNNGG 1 cut(s) 461
BseMI GCAATG 1 cut(s) 41
BseNI ACTGG 1 cut(s) 50
BseRI GAGGAG 2 cut(s) 432, 435
BseXI GCAGC 2 cut(s) 317, 320
Bsh1236I CGCG 1 cut(s) 399
BshFI GGCC 1 cut(s) 237
BslI CCNNNNNNNGG 1 cut(s) 461
BsnI GGCC 1 cut(s) 237
Bsp119I TTCGAA 1 cut(s) 214
Bsp143I GATC 1 cut(s) 361
BspACI CCGC 5 cut(s) 312, 354, 357, 397, 399
BspANI GGCC 1 cut(s) 237
BspFNI CGCG 1 cut(s) 399
BspMI ACCTGC 1 cut(s) 356
BspQI GCTCTTC 1 cut(s) 330
BspT104I TTCGAA 1 cut(s) 214
BsrDI GCAATG 1 cut(s) 41
BsrI ACTGG 1 cut(s) 50
BssECI CCNNGG 2 cut(s) 98, 397
BssMI GATC 1 cut(s) 361
BssNI GRCGYC 1 cut(s) 291
BssT1I CCWWGG 1 cut(s) 98
Bst4CI ACNGT 3 cut(s) 285, 319, 430
Bst6I CTCTTC 3 cut(s) 159, 330, 453
BstACI GRCGYC 1 cut(s) 291
BstBI TTCGAA 1 cut(s) 214
BstC8I GCNNGC 2 cut(s) 30, 235
BstDEI CTNAG 1 cut(s) 146
BstDSI CCRYGG 1 cut(s) 397
BstFNI CGCG 1 cut(s) 399
BstKTI GATC 1 cut(s) 364
BstMBI GATC 1 cut(s) 361
BstMWI GCNNNNNNNGC 2 cut(s) 311, 320
BstNSI RCATGY 1 cut(s) 32
BstUI CGCG 1 cut(s) 399
BstV1I GCAGC 2 cut(s) 317, 320
BsuRI GGCC 1 cut(s) 237
BtgI CCRYGG 1 cut(s) 397
BtsIMutI CAGTG 3 cut(s) 258, 315, 426
BveI ACCTGC 1 cut(s) 356
Cac8I GCNNGC 2 cut(s) 30, 235
Cfr13I GGNCC 1 cut(s) 177
Cfr42I CCGCGG 1 cut(s) 400
CseI GACGC 1 cut(s) 299
Csp6I GTAC 2 cut(s) 58, 244
CviAII CATG 3 cut(s) 29, 194, 230
CviJI RGCY 9 cut(s) 5, 64, 122, 145, 237, 311, 323, 373, 380
CviKI_1 RGCY 9 cut(s) 5, 64, 122, 145, 237, 311, 323, 373, 380
CviQI GTAC 2 cut(s) 58, 244
DdeI CTNAG 1 cut(s) 146
DpnI GATC 1 cut(s) 363
DpnII GATC 1 cut(s) 361
Eam1104I CTCTTC 3 cut(s) 159, 330, 453
EarI CTCTTC 3 cut(s) 159, 330, 453
EciI GGCGGA 1 cut(s) 343
Eco130I CCWWGG 1 cut(s) 98
Eco147I AGGCCT 1 cut(s) 237
Eco47I GGWCC 1 cut(s) 177
Eco57I CTGAAG 1 cut(s) 224
EcoRI GAATTC 1 cut(s) 109
EcoT14I CCWWGG 1 cut(s) 98
ErhI CCWWGG 1 cut(s) 98
FaeI CATG 3 cut(s) 32, 197, 233
FaiI YATR 5 cut(s) 30, 74, 195, 231, 413
FatI CATG 3 cut(s) 28, 193, 229
Fnu4HI GCNGC 4 cut(s) 306, 309, 312, 357
Fsp4HI GCNGC 4 cut(s) 306, 309, 312, 357
FspBI CTAG 2 cut(s) 99, 129
GluI GCNGC 4 cut(s) 306, 309, 312, 357
HaeIII GGCC 1 cut(s) 237
HgaI GACGC 1 cut(s) 299
Hin1I GRCGYC 1 cut(s) 291
Hin1II CATG 3 cut(s) 32, 197, 233
HphI GGTGA 1 cut(s) 6
Hpy166II GTNNAC 1 cut(s) 281
Hpy188III TCNNGA 4 cut(s) 106, 117, 161, 418
Hpy8I GTNNAC 1 cut(s) 281
Hpy99I CGWCG 1 cut(s) 118
HpyAV CCTTC 1 cut(s) 248
HpyCH4III ACNGT 3 cut(s) 285, 319, 430
HpyCH4V TGCA 2 cut(s) 32, 233
HpyF10VI GCNNNNNNNGC 2 cut(s) 311, 320
HpyF3I CTNAG 1 cut(s) 146
Hsp92I GRCGYC 1 cut(s) 291
Hsp92II CATG 3 cut(s) 32, 197, 233
KspI CCGCGG 1 cut(s) 400
Kzo9I GATC 1 cut(s) 361
LguI GCTCTTC 1 cut(s) 330
LmnI GCTCC 1 cut(s) 356
LpnPI CCDG 6 cut(s) 63, 74, 95, 146, 219, 361
Lsp1109I GCAGC 2 cut(s) 317, 320
MaeI CTAG 2 cut(s) 99, 129
MaeIII GTNAC 1 cut(s) 138
MalI GATC 1 cut(s) 363
MboI GATC 1 cut(s) 361
MboII GAAGA 5 cut(s) 176, 198, 244, 317, 440
MluCI AATT 3 cut(s) 67, 109, 218
MmeI TCCRAC 1 cut(s) 391
MnlI CCTC 8 cut(s) 160, 209, 285, 339, 344, 453, 456, 462
MspA1I CMGCKG 1 cut(s) 399
MvnI CGCG 1 cut(s) 399
MwoI GCNNNNNNNGC 2 cut(s) 311, 320
NdeII GATC 1 cut(s) 361
NlaIII CATG 3 cut(s) 32, 197, 233
NspI RCATGY 1 cut(s) 32
NspV TTCGAA 1 cut(s) 214
PaeI GCATGC 1 cut(s) 32
PaqCI CACCTGC 1 cut(s) 356
PceI AGGCCT 1 cut(s) 237
PciSI GCTCTTC 1 cut(s) 330
PkrI GCNGC 4 cut(s) 307, 310, 313, 358
PspPI GGNCC 1 cut(s) 177
RsaI GTAC 2 cut(s) 59, 245
RsaNI GTAC 2 cut(s) 58, 244
SacII CCGCGG 1 cut(s) 400
SapI GCTCTTC 1 cut(s) 330
SatI GCNGC 4 cut(s) 306, 309, 312, 357
Sau3AI GATC 1 cut(s) 361
Sau96I GGNCC 1 cut(s) 177
SetI ASST 6 cut(s) 104, 124, 159, 350, 375, 382
Sfr303I CCGCGG 1 cut(s) 400
SfuI TTCGAA 1 cut(s) 214
SgrBI CCGCGG 1 cut(s) 400
SinI GGWCC 1 cut(s) 177
SphI GCATGC 1 cut(s) 32
Sse9I AATT 3 cut(s) 67, 109, 218
SseBI AGGCCT 1 cut(s) 237
SsiI CCGC 5 cut(s) 312, 354, 357, 397, 399
SspMI CTAG 2 cut(s) 99, 129
StuI AGGCCT 1 cut(s) 237
StyI CCWWGG 1 cut(s) 98
TaaI ACNGT 3 cut(s) 285, 319, 430
TaqI TCGA 2 cut(s) 116, 214
TaqII GACCGA 1 cut(s) 165
TasI AATT 3 cut(s) 67, 109, 218
TatI WGTACW 1 cut(s) 243
TauI GCSGC 2 cut(s) 314, 359
TscAI CASTG 3 cut(s) 265, 322, 433
TseI GCWGC 2 cut(s) 305, 308
TspRI CASTG 3 cut(s) 265, 322, 433
VpaK11BI GGWCC 1 cut(s) 177
XapI RAATTY 1 cut(s) 109
XceI RCATGY 1 cut(s) 32
XmaJI CCTAGG 1 cut(s) 98
XspI CTAG 2 cut(s) 99, 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.