pycom12g07470

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
Physical Location & Seq
Reverse (-)
7822984 .. 7823654
671 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g07470.1

Sequence Viewer

Length: 432 bp
ATGGTGTGTATGGATTTCATTTGGACCGTGCTAAAACCAACCAAGAGGCCACAACCCATGGTTCTCAACCACGCACCCCCAGTCCAGTCATATGCACATGTGATCTACTCTTTTTCTCCAAAGTCCCCAAAGTCCACCAAGCCAACATCTTCATATAAACACCTTCTAACCCCCACCCCCTCCCCCCCTCTTTCTCCCTGCAGCTTCCTACTTTTCATGGCTGGCCTTCAATACAACTTCTTTCCCACTGACTTCCTCTACCCTCGTACTTCTCAGTTGCGGGCCTTAGAGCCAACTAACAAAGCTACTGTCCTTCCCCTCAAAACCAGCAAAACCGATCATGTAGCTGACGACCTCGAGCAGCTCAAGATTCAACACCGTGGAGTTCAAGTCGTCAAGATTTCAAAATCTCCTCCTTCCATGCATGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

144

Amino Acids

16.07

Weight (kDa)

9.77

Isoelectric Point (pI)

53.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0018460)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 280
AfaI GTAC 1 cut(s) 268
AflIII ACRYGT 1 cut(s) 97
AgsI TTSAA 4 cut(s) 230, 374, 389, 405
AluBI AGCT 4 cut(s) 204, 305, 347, 364
AluI AGCT 4 cut(s) 204, 305, 347, 364
Ama87I CYCGRG 1 cut(s) 356
AoxI GGCC 3 cut(s) 47, 223, 282
ApeKI GCWGC 2 cut(s) 201, 361
ArsI GACNNNNNNTTYG 2 cut(s) 294, 326
AspS9I GGNCC 2 cut(s) 24, 282
AvaI CYCGRG 1 cut(s) 356
AvaII GGWCC 1 cut(s) 24
BbvI GCAGC 2 cut(s) 213, 373
BfmI CTRYAG 1 cut(s) 199
BisI GCNGC 2 cut(s) 202, 362
BlsI GCNGC 2 cut(s) 203, 363
Bme18I GGWCC 1 cut(s) 24
BmeT110I CYCGRG 1 cut(s) 356
BmgT120I GGNCC 2 cut(s) 24, 282
BmrI ACTGGG 1 cut(s) 74
BmuI ACTGGG 1 cut(s) 74
BpuEI CTTGAG 1 cut(s) 350
BsaJI CCNNGG 2 cut(s) 57, 379
BsaXI ACNNNNNCTCC 2 cut(s) 375, 405
Bse1I ACTGG 2 cut(s) 80, 85
BseDI CCNNGG 2 cut(s) 57, 379
BseMII CTCAG 1 cut(s) 287
BseNI ACTGG 2 cut(s) 80, 85
BseRI GAGGAG 1 cut(s) 402
BseXI GCAGC 2 cut(s) 213, 373
BshFI GGCC 3 cut(s) 49, 225, 284
BsiHKCI CYCGRG 1 cut(s) 356
BslFI GGGAC 1 cut(s) 109
BsmFI GGGAC 1 cut(s) 109
BsnI GGCC 3 cut(s) 49, 225, 284
BsoBI CYCGRG 1 cut(s) 356
Bsp143I GATC 2 cut(s) 102, 337
Bsp19I CCATGG 1 cut(s) 57
BspACI CCGC 1 cut(s) 280
BspANI GGCC 3 cut(s) 49, 225, 284
BspCNI CTCAG 1 cut(s) 286
BspMAI CTGCAG 1 cut(s) 203
BsrI ACTGG 2 cut(s) 80, 85
BssECI CCNNGG 2 cut(s) 57, 379
BssMI GATC 2 cut(s) 102, 337
BssT1I CCWWGG 1 cut(s) 57
Bst4CI ACNGT 3 cut(s) 28, 310, 380
BstC8I GCNNGC 2 cut(s) 223, 282
BstDEI CTNAG 2 cut(s) 273, 286
BstDSI CCRYGG 2 cut(s) 57, 379
BstKTI GATC 2 cut(s) 105, 340
BstMBI GATC 2 cut(s) 102, 337
BstNSI RCATGY 1 cut(s) 101
BstSFI CTRYAG 1 cut(s) 199
BstV1I GCAGC 2 cut(s) 213, 373
BsuRI GGCC 3 cut(s) 49, 225, 284
BtgI CCRYGG 2 cut(s) 57, 379
BtsIMutI CAGTG 1 cut(s) 246
Cac8I GCNNGC 2 cut(s) 223, 282
Cfr13I GGNCC 2 cut(s) 24, 282
Csp6I GTAC 1 cut(s) 267
CviAII CATG 6 cut(s) 58, 98, 217, 341, 421, 425
CviQI GTAC 1 cut(s) 267
DdeI CTNAG 2 cut(s) 273, 286
DpnI GATC 2 cut(s) 104, 339
DpnII GATC 2 cut(s) 102, 337
Eco130I CCWWGG 1 cut(s) 57
Eco47I GGWCC 1 cut(s) 24
Eco88I CYCGRG 1 cut(s) 356
EcoT14I CCWWGG 1 cut(s) 57
EcoT22I ATGCAT 1 cut(s) 426
ErhI CCWWGG 1 cut(s) 57
FaeI CATG 6 cut(s) 61, 101, 220, 344, 424, 428
FaqI GGGAC 1 cut(s) 109
FatI CATG 6 cut(s) 57, 97, 216, 340, 420, 424
FauI CCCGC 1 cut(s) 273
FauNDI CATATG 1 cut(s) 91
Fnu4HI GCNGC 2 cut(s) 202, 362
Fsp4HI GCNGC 2 cut(s) 202, 362
GluI GCNGC 2 cut(s) 202, 362
HaeIII GGCC 3 cut(s) 49, 225, 284
Hin1II CATG 6 cut(s) 61, 101, 220, 344, 424, 428
HinfI GANTC 1 cut(s) 370
Hpy166II GTNNAC 1 cut(s) 135
Hpy188III TCNNGA 2 cut(s) 367, 397
Hpy8I GTNNAC 1 cut(s) 135
HpyAV CCTTC 4 cut(s) 173, 236, 323, 426
HpyCH4III ACNGT 3 cut(s) 28, 310, 380
HpyCH4V TGCA 3 cut(s) 95, 201, 424
HpyF3I CTNAG 2 cut(s) 273, 286
Hsp92II CATG 6 cut(s) 61, 101, 220, 344, 424, 428
Kzo9I GATC 2 cut(s) 102, 337
LpnPI CCDG 5 cut(s) 93, 98, 207, 211, 340
Lsp1109I GCAGC 2 cut(s) 213, 373
MalI GATC 2 cut(s) 104, 339
MboI GATC 2 cut(s) 102, 337
MboII GAAGA 1 cut(s) 141
MnlI CCTC 8 cut(s) 39, 190, 198, 266, 273, 329, 365, 423
Mph1103I ATGCAT 1 cut(s) 426
NcoI CCATGG 1 cut(s) 57
NdeI CATATG 1 cut(s) 91
NdeII GATC 2 cut(s) 102, 337
NlaIII CATG 6 cut(s) 61, 101, 220, 344, 424, 428
NsiI ATGCAT 1 cut(s) 426
NspI RCATGY 1 cut(s) 101
PaeR7I CTCGAG 1 cut(s) 356
PciI ACATGT 1 cut(s) 97
PfeI GAWTC 1 cut(s) 370
PkrI GCNGC 2 cut(s) 203, 363
PscI ACATGT 1 cut(s) 97
PspPI GGNCC 2 cut(s) 24, 282
PspXI VCTCGAGB 1 cut(s) 356
PstI CTGCAG 1 cut(s) 203
RsaI GTAC 1 cut(s) 268
RsaNI GTAC 1 cut(s) 267
SatI GCNGC 2 cut(s) 202, 362
Sau3AI GATC 2 cut(s) 102, 337
Sau96I GGNCC 2 cut(s) 24, 282
SetI ASST 6 cut(s) 165, 206, 307, 349, 357, 366
SfcI CTRYAG 1 cut(s) 199
Sfr274I CTCGAG 1 cut(s) 356
SinI GGWCC 1 cut(s) 24
SlaI CTCGAG 1 cut(s) 356
SmlI CTYRAG 2 cut(s) 356, 365
SmoI CTYRAG 2 cut(s) 356, 365
SsiI CCGC 1 cut(s) 280
StyI CCWWGG 1 cut(s) 57
TaaI ACNGT 3 cut(s) 28, 310, 380
TaqI TCGA 1 cut(s) 357
TfiI GAWTC 1 cut(s) 370
TscAI CASTG 1 cut(s) 253
TseI GCWGC 2 cut(s) 201, 361
TspDTI ATGAA 3 cut(s) 7, 141, 205
TspRI CASTG 1 cut(s) 253
VpaK11BI GGWCC 1 cut(s) 24
XceI RCATGY 1 cut(s) 101
XhoI CTCGAG 1 cut(s) 356
Zsp2I ATGCAT 1 cut(s) 426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.