Prupe.7G055400_v2.0.a1

Transcription initiation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0014000
Physical Location & Seq
Reverse (-)
9420831 .. 9425518
4688 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G055400.1

Sequence Viewer

Length: 939 bp
ATGTCCGATGCGTATTGCTCCGACTGCAAGCGCCAGACGGAGGTGGTTTTCGACCACTCGGCGGGAGACACGGTGTGCTCCGAGTGTGGATTAGTGTTGGAATCTCATTCCATCGACGAGACCTCAGAGTGGCGTACCTTCGCGAACGAGTCCGGCGATAATGACCCGGTCCGTGTTGGTGGGCCCACCAACCCACTATTGGCCGATGGCGGGTTGTCCACCGTCATAGCCAAGCCTAATGGGGCATCTGGTGAATTTTTATCTTCGTCGTTGGGGCGGTGGCAGAACCGTGGGTCGAATCCGGATCGGGGCTTGATTCTGGCCTTCAAAACCATTGCCACCATGTCTGATAGGTTGGGCCTTGTTGCAACCATCAAGGATCGGGCTAATGAGATATATAAGAGGGTGGAAGATCAGAAATCTAGTAGAGGAAGAAATCAGGATGCATTATTGGCTGCTTGCCTATATATTGCTTGTCGACAAGAAGACAAGCCACGCACTGTAAAGGAAATTTGCTCCGTCGCCAATGGAGCCTCAAAGAAGGAAATTGGCCGAGCAAAAGAATATATAGTGAAACAACTGGGACTAGAGAAGGGTCAGTCAGTGGAGATGGGAACAATACATGCCGGGGACTTTATGAGGCGCTTCTGTTCCAATCTTGGAATGAATAATCAAGCAGTCAAAGCTGCCCAAGAAGCTGTGCAAAAGTCGGAAGAATTTGATATCAGGAGGAGCCCTATATCAATAGCAGCAGCAGTTATTTATATTATCACTCAGCTTTCAGACGACAAGAAGCCTCTCAAAGATATCTCAGTTGCTACAGGAGTAGCAGAAGGAACAATCAGAAACTCATACAAAGACCTTTATCCCCATGTATCAAAGATAATACCCAACTGGTATGCAAAGGAGGAGGATCTCAAGAATCTTTGCAGCCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko03022 ko05169 ko05203 map03022 map05169 map05203
Pfam Domains
Protein Families
TFIIB TF_Zn_Ribbon

Protein Analysis

313

Amino Acids

34.14

Weight (kDa)

6.47

Isoelectric Point (pI)

40.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014000)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G10330
fragaria_vesca FvH4_6g24330
malus_domestica MD12G1075300.v1.1 MD14G1073800.v1.1
prunus_persica Prupe.7G055400_v2.0.a1
pyrus_communis pycom12g06480 pycom14g06300
rosa_chinensis RchiOBHm_Chr3g0483261
rosa_laevigata RLG00000023294
rosa_multiflora Rmu_sc0007550.1_g000009
rosa_roxburghii Rroxscaffold_6G00398520
rosa_rugosa Rorug03G0205000
rosa_samantha Rh3AG253400 Rh3BG290500 Rh3CG287300 Rh3DG283100
rosa_wichuraiana Rw3G022920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 478
AccII CGCG 1 cut(s) 143
AccIII TCCGGA 1 cut(s) 301
AciI CCGC 3 cut(s) 62, 210, 277
AclWI GGATC 3 cut(s) 312, 387, 921
AcoI YGGCCR 2 cut(s) 201, 550
AcsI RAATTY 3 cut(s) 254, 510, 716
AdeI CACNNNGTG 1 cut(s) 75
AfaI GTAC 1 cut(s) 136
AfiI CCNNNNNNNGG 6 cut(s) 40, 61, 129, 199, 210, 308
AgsI TTSAA 1 cut(s) 328
AluBI AGCT 3 cut(s) 686, 698, 778
AluI AGCT 3 cut(s) 686, 698, 778
Alw21I GWGCWC 1 cut(s) 80
Alw26I GTCTC 2 cut(s) 60, 113
AlwI GGATC 3 cut(s) 312, 387, 921
Aor13HI TCCGGA 1 cut(s) 301
AoxI GGCC 5 cut(s) 182, 201, 321, 358, 550
ApaI GGGCCC 1 cut(s) 186
ApeKI GCWGC 5 cut(s) 455, 686, 749, 752, 930
ApoI RAATTY 3 cut(s) 254, 510, 716
AspLEI GCGC 2 cut(s) 33, 645
AspS9I GGNCC 4 cut(s) 169, 182, 183, 358
AsuC2I CCSGG 2 cut(s) 167, 628
AsuHPI GGTGA 1 cut(s) 263
AvaII GGWCC 1 cut(s) 169
BaeGI GKGCMC 1 cut(s) 186
BanII GRGCYC 2 cut(s) 186, 737
BbsI GAAGAC 1 cut(s) 492
Bbv12I GWGCWC 1 cut(s) 80
BbvI GCAGC 4 cut(s) 442, 673, 761, 764
BccI CCATC 4 cut(s) 119, 200, 380, 604
BcnI CCSGG 2 cut(s) 167, 628
BcoDI GTCTC 2 cut(s) 60, 113
BfaI CTAG 2 cut(s) 423, 587
BfmI CTRYAG 1 cut(s) 819
BfoI RGCGCY 2 cut(s) 34, 646
BisI GCNGC 5 cut(s) 456, 687, 750, 753, 931
BlsI GCNGC 5 cut(s) 457, 688, 751, 754, 932
Bme1390I CCNGG 2 cut(s) 167, 628
Bme18I GGWCC 1 cut(s) 169
BmgT120I GGNCC 4 cut(s) 169, 182, 183, 358
BmiI GGNNCC 3 cut(s) 184, 532, 734
BmrFI CCNGG 2 cut(s) 167, 628
BmrI ACTGGG 1 cut(s) 590
BmsI GCATC 2 cut(s) 254, 433
BmuI ACTGGG 1 cut(s) 590
BpiI GAAGAC 1 cut(s) 492
BpuEI CTTGAG 1 cut(s) 902
BpuMI CCSGG 2 cut(s) 167, 628
BsaI GGTCTC 1 cut(s) 113
BsaJI CCNNGG 2 cut(s) 289, 627
BsaWI WCCGGW 1 cut(s) 301
BsaXI ACNNNNNCTCC 2 cut(s) 57, 87
Bsc4I CCNNNNNNNGG 6 cut(s) 40, 61, 129, 199, 210, 308
Bse1I ACTGG 2 cut(s) 585, 899
Bse3DI GCAATG 1 cut(s) 333
BseAI TCCGGA 1 cut(s) 301
BseDI CCNNGG 2 cut(s) 289, 627
BseGI GGATG 1 cut(s) 448
BseLI CCNNNNNNNGG 6 cut(s) 40, 61, 129, 199, 210, 308
BseMI GCAATG 1 cut(s) 333
BseMII CTCAG 3 cut(s) 138, 788, 825
BseNI ACTGG 2 cut(s) 585, 899
BseRI GAGGAG 2 cut(s) 745, 923
BseSI GKGCMC 1 cut(s) 186
BseXI GCAGC 4 cut(s) 442, 673, 761, 764
Bsh1236I CGCG 1 cut(s) 143
BshFI GGCC 5 cut(s) 184, 203, 323, 360, 552
BsiHKAI GWGCWC 1 cut(s) 80
BsiSI CCGG 4 cut(s) 153, 167, 302, 627
BslFI GGGAC 2 cut(s) 597, 644
BslI CCNNNNNNNGG 6 cut(s) 40, 61, 129, 199, 210, 308
BsmAI GTCTC 2 cut(s) 60, 113
BsmFI GGGAC 2 cut(s) 597, 644
BsnI GGCC 5 cut(s) 184, 203, 323, 360, 552
Bso31I GGTCTC 1 cut(s) 113
Bsp120I GGGCCC 1 cut(s) 182
Bsp1286I GDGCHC 3 cut(s) 80, 186, 737
Bsp13I TCCGGA 1 cut(s) 301
Bsp143I GATC 4 cut(s) 304, 379, 412, 913
Bsp68I TCGCGA 1 cut(s) 143
BspACI CCGC 3 cut(s) 62, 210, 277
BspANI GGCC 5 cut(s) 184, 203, 323, 360, 552
BspCNI CTCAG 3 cut(s) 137, 787, 824
BspEI TCCGGA 1 cut(s) 301
BspFNI CGCG 1 cut(s) 143
BspLI GGNNCC 3 cut(s) 184, 532, 734
BspPI GGATC 3 cut(s) 312, 387, 921
BspTNI GGTCTC 1 cut(s) 113
BsrDI GCAATG 1 cut(s) 333
BsrI ACTGG 2 cut(s) 585, 899
BssECI CCNNGG 2 cut(s) 289, 627
BssMI GATC 4 cut(s) 304, 379, 412, 913
Bst4CI ACNGT 4 cut(s) 73, 223, 290, 502
BstC8I GCNNGC 2 cut(s) 29, 460
BstDEI CTNAG 3 cut(s) 124, 774, 811
BstDSI CCRYGG 1 cut(s) 289
BstF5I GGATG 1 cut(s) 448
BstFNI CGCG 1 cut(s) 143
BstH2I RGCGCY 2 cut(s) 34, 646
BstHHI GCGC 2 cut(s) 33, 645
BstKTI GATC 4 cut(s) 307, 382, 415, 916
BstMAI GTCTC 2 cut(s) 60, 113
BstMBI GATC 4 cut(s) 304, 379, 412, 913
BstMWI GCNNNNNNNGC 5 cut(s) 24, 452, 530, 683, 695
BstNSI RCATGY 1 cut(s) 626
BstSCI CCNGG 2 cut(s) 165, 626
BstSFI CTRYAG 1 cut(s) 819
BstSLI GKGCMC 1 cut(s) 186
BstUI CGCG 1 cut(s) 143
BstV1I GCAGC 4 cut(s) 442, 673, 761, 764
BstV2I GAAGAC 1 cut(s) 492
BstX2I RGATCY 1 cut(s) 913
BstYI RGATCY 1 cut(s) 913
BsuRI GGCC 5 cut(s) 184, 203, 323, 360, 552
BtgI CCRYGG 1 cut(s) 289
BtsCI GGATG 1 cut(s) 448
BtsIMutI CAGTG 2 cut(s) 498, 609
BtuMI TCGCGA 1 cut(s) 143
Cac8I GCNNGC 2 cut(s) 29, 460
CfoI GCGC 2 cut(s) 33, 645
Cfr13I GGNCC 4 cut(s) 169, 182, 183, 358
CpoI CGGWCCG 1 cut(s) 169
Csp6I GTAC 1 cut(s) 135
CspI CGGWCCG 1 cut(s) 169
CviAII CATG 3 cut(s) 343, 623, 872
CviQI GTAC 1 cut(s) 135
DdeI CTNAG 3 cut(s) 124, 774, 811
DpnI GATC 4 cut(s) 306, 381, 414, 915
DpnII GATC 4 cut(s) 304, 379, 412, 913
DraIII CACNNNGTG 1 cut(s) 75
EaeI YGGCCR 2 cut(s) 201, 550
Eco24I GRGCYC 2 cut(s) 186, 737
Eco31I GGTCTC 1 cut(s) 113
Eco32I GATATC 2 cut(s) 724, 808
Eco47I GGWCC 1 cut(s) 169
EcoRV GATATC 2 cut(s) 724, 808
EcoT22I ATGCAT 1 cut(s) 448
EcoT38I GRGCYC 2 cut(s) 186, 737
FaeI CATG 3 cut(s) 346, 626, 875
FaqI GGGAC 2 cut(s) 597, 644
FatI CATG 3 cut(s) 342, 622, 871
FauI CCCGC 2 cut(s) 55, 203
FblI GTMKAC 1 cut(s) 478
Fnu4HI GCNGC 5 cut(s) 456, 687, 750, 753, 931
FokI GGATG 1 cut(s) 455
FriOI GRGCYC 2 cut(s) 186, 737
Fsp4HI GCNGC 5 cut(s) 456, 687, 750, 753, 931
FspBI CTAG 2 cut(s) 423, 587
GlaI GCGC 2 cut(s) 32, 644
GluI GCNGC 5 cut(s) 456, 687, 750, 753, 931
HaeII RGCGCY 2 cut(s) 34, 646
HaeIII GGCC 5 cut(s) 184, 203, 323, 360, 552
HapII CCGG 4 cut(s) 153, 167, 302, 627
HhaI GCGC 2 cut(s) 33, 645
Hin1II CATG 3 cut(s) 346, 626, 875
Hin6I GCGC 2 cut(s) 31, 643
HinP1I GCGC 2 cut(s) 31, 643
HincII GTYRAC 1 cut(s) 479
HindII GTYRAC 1 cut(s) 479
HinfI GANTC 5 cut(s) 101, 149, 298, 316, 922
HpaII CCGG 4 cut(s) 153, 167, 302, 627
HphI GGTGA 1 cut(s) 263
Hpy166II GTNNAC 2 cut(s) 219, 479
Hpy188I TCNGA 9 cut(s) 7, 22, 82, 127, 349, 417, 712, 784, 845
Hpy188III TCNNGA 5 cut(s) 142, 302, 440, 727, 919
Hpy8I GTNNAC 2 cut(s) 219, 479
Hpy99I CGWCG 3 cut(s) 119, 271, 524
HpyAV CCTTC 5 cut(s) 148, 334, 535, 586, 827
HpyCH4III ACNGT 4 cut(s) 73, 223, 290, 502
HpyCH4V TGCA 6 cut(s) 27, 368, 446, 703, 902, 930
HpyF10VI GCNNNNNNNGC 5 cut(s) 24, 452, 530, 683, 695
HpyF3I CTNAG 3 cut(s) 124, 774, 811
Hsp92II CATG 3 cut(s) 346, 626, 875
HspAI GCGC 2 cut(s) 31, 643
Kpn2I TCCGGA 1 cut(s) 301
Kzo9I GATC 4 cut(s) 304, 379, 412, 913
LmnI GCTCC 5 cut(s) 23, 83, 521, 530, 732
Lsp1109I GCAGC 4 cut(s) 442, 673, 761, 764
LweI GCATC 2 cut(s) 254, 433
MaeI CTAG 2 cut(s) 423, 587
MalI GATC 4 cut(s) 306, 381, 414, 915
MboI GATC 4 cut(s) 304, 379, 412, 913
MboII GAAGA 5 cut(s) 255, 422, 444, 497, 725
MflI RGATCY 1 cut(s) 913
MhlI GDGCHC 3 cut(s) 80, 186, 737
MluCI AATT 4 cut(s) 254, 510, 546, 716
MlyI GAGTC 1 cut(s) 158
MmeI TCCRAC 3 cut(s) 45, 78, 690
Mph1103I ATGCAT 1 cut(s) 448
MroI TCCGGA 1 cut(s) 301
MspI CCGG 4 cut(s) 153, 167, 302, 627
MspR9I CCNGG 2 cut(s) 167, 628
MvnI CGCG 1 cut(s) 143
MwoI GCNNNNNNNGC 5 cut(s) 24, 452, 530, 683, 695
NciI CCSGG 2 cut(s) 167, 628
NdeII GATC 4 cut(s) 304, 379, 412, 913
NlaIII CATG 3 cut(s) 346, 626, 875
NlaIV GGNNCC 3 cut(s) 184, 532, 734
NmeAIII GCCGAG 2 cut(s) 38, 578
NruI TCGCGA 1 cut(s) 143
NsiI ATGCAT 1 cut(s) 448
NspI RCATGY 1 cut(s) 626
PcsI WCGNNNNNNNCGW 1 cut(s) 153
PfeI GAWTC 4 cut(s) 101, 298, 316, 922
PflFI GACNNNGTC 1 cut(s) 167
PkrI GCNGC 5 cut(s) 457, 688, 751, 754, 932
PleI GAGTC 1 cut(s) 157
PpsI GAGTC 1 cut(s) 157
PspN4I GGNNCC 3 cut(s) 184, 532, 734
PspOMI GGGCCC 1 cut(s) 182
PspPI GGNCC 4 cut(s) 169, 182, 183, 358
PsuI RGATCY 1 cut(s) 913
PsyI GACNNNGTC 1 cut(s) 167
RruI TCGCGA 1 cut(s) 143
RsaI GTAC 1 cut(s) 136
RsaNI GTAC 1 cut(s) 135
Rsr2I CGGWCCG 1 cut(s) 169
RsrII CGGWCCG 1 cut(s) 169
SalI GTCGAC 1 cut(s) 477
SatI GCNGC 5 cut(s) 456, 687, 750, 753, 931
Sau3AI GATC 4 cut(s) 304, 379, 412, 913
Sau96I GGNCC 4 cut(s) 169, 182, 183, 358
SchI GAGTC 1 cut(s) 158
ScrFI CCNGG 2 cut(s) 167, 628
SduI GDGCHC 3 cut(s) 80, 186, 737
SetI ASST 8 cut(s) 45, 125, 140, 356, 688, 700, 780, 864
SfaNI GCATC 2 cut(s) 254, 433
SfcI CTRYAG 1 cut(s) 819
SinI GGWCC 1 cut(s) 169
SmlI CTYRAG 1 cut(s) 917
SmoI CTYRAG 1 cut(s) 917
Sse9I AATT 4 cut(s) 254, 510, 546, 716
SsiI CCGC 3 cut(s) 62, 210, 277
SspMI CTAG 2 cut(s) 423, 587
StyD4I CCNGG 2 cut(s) 165, 626
TaaI ACNGT 4 cut(s) 73, 223, 290, 502
TaqI TCGA 4 cut(s) 51, 114, 296, 478
TasI AATT 4 cut(s) 254, 510, 546, 716
TfiI GAWTC 4 cut(s) 101, 298, 316, 922
TscAI CASTG 2 cut(s) 505, 609
TseI GCWGC 5 cut(s) 455, 686, 749, 752, 930
TspDTI ATGAA 1 cut(s) 680
TspGWI ACGGA 3 cut(s) 53, 161, 508
TspRI CASTG 2 cut(s) 505, 609
Tth111I GACNNNGTC 1 cut(s) 167
VpaK11BI GGWCC 1 cut(s) 169
XapI RAATTY 3 cut(s) 254, 510, 716
XceI RCATGY 1 cut(s) 626
XcmI CCANNNNNNNNNTGG 1 cut(s) 196
XmiI GTMKAC 1 cut(s) 478
XspI CTAG 2 cut(s) 423, 587
Zsp2I ATGCAT 1 cut(s) 448
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.