Prupe.7G181000_v2.0.a1

Ubiquitin domain-containing protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
Physical Location & Seq
Forward (+)
17701578 .. 17706690
5113 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G181000.2

Sequence Viewer

Length: 1632 bp
ATGGGAGGAGGAGGTGAGGGTTCTGTGGACGACGGGACCTACTCCGACGATGGAGATGGAGTCAAGGTCAACGTCAACGTCAGATGCTCCAATGGCTCCAAGTTCACCGTTCAGATTAACCTCGAATCCACCGTTGGATCGTTCAAGGAAGTTCTCTCATCAAAATGCGACATTCCGGCCGATCAGCAGCGTCTGATTTACAAGGGTCGGATCTTAAAGGACGATCAAACCGTCCAAAGCTATGGTTTGGAGGCAGATCACACTGTTCACTTGGTTCGTGGTTTTGCACCGCCTGCGTCTGCCAACCCTGCTGGTGCAACCAATGCTGGAGCTGCAAATTCCACCCAAGCAAGGGGTGTTGGATCCAATGATGGTGGGACATTGGGAGGGTCTGGTTTTGGAGCCTCACCATTCCCAGGACTCGGACTTAATGGTATGGGTGGCACTGGTGGTCTGTTTGGATCTGGGTTTCCTGACTTTGAACAAGTGCAGCAACAATTGACTCAGAGCCCCAGCGTAATGAGAGACATAATGAACACGCCTGCCGTTCAAAATCTTATGAATAACCCTGACATAATGCGGAACTTGATTATGAACAACCCTCAAATGCGTGAAATTATTGATCGAAATCCCGAGCTCGCACACGTACTTAATGATCCTGGCACGCTCCGTCAGACACTTGAAGCAGCAAGAAACCCCGAGCTTATGCGTGAAATGATGCGTAACACTGACAGAGCCATGAGCAACATTGAAGCTACTCCTGAGGGATTTAACATGCTCAGGCGGATGTATGAAAACGTACAAGAGCCATTTATGAATGCAACAACAATGGCTGGGAATGCTGGAAGTGATGGTTCAAACCCATTTGCATCTCTTTTTGGGGCCCAAGGTGGCAACCAAACCAGATCTGATTCAATGAATGGTTCTCCCGCTCCAAATACTAACCCGCTTCCCAACCCATGGTCCTCTACAGGCACAGCTGGAGTTGCCGAAACTAATACCACAGCATCGAATCCTATCAGTGATGCTAGGCTGCAGACACCAACTCCCATACTTAACTTTCCAGAGTTTGAAGCATTGGGTGCTCTGCCACAGGATTACAATTCAATGAATCAGTTTATGCAAAATCCAGCTGTTTCTCAAATAATGCAAAGCCTCATCTCCAATCCTCAGTATATGAACCAGATTCTAGGTTCCAACCCCCAGTTTCGAAGCATGCTTGATTCCAATTCTCATTTAAGAGAAATGATGCAAAACCCTGAATTTCTTCGTCAGTTGGCTTCTCCTGAGACTATGCAGCTGCTCTTGACTGTGCAGCAATCACTTATGTCTCAGTTTGGTCGGCAACAGCAACAGTCAACCCAGGAAACAGGTCAGACTGGTGGAACCACAGGATCATTCAATAACACGGGGCTAGAGATGCTGATGAACATGTTTGGTGGGCTTGGCACTGGCAGCCTGGCTGTTCCCAATAGGCCTGATGTGCCACCGGAAGAACTCTATGCTGCACAGCTTTCACAACTTCAGGAGATGGGTTTCTTTGACCGACAAGAGAACATACGGGCTCTGATGGCCACCGCAGGAAACGTCCATGCAGCAGTAGAGCGACTTTTAGGGAATTCCGGTTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

544

Amino Acids

58.17

Weight (kDa)

4.7

Isoelectric Point (pI)

41.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 960
AccBSI CCGCTC 1 cut(s) 932
AciI CCGC 6 cut(s) 290, 580, 784, 930, 947, 1578
AclWI GGATC 7 cut(s) 145, 218, 357, 370, 469, 650, 1402
AcoI YGGCCR 2 cut(s) 177, 1572
AcsI RAATTY 3 cut(s) 337, 1262, 1618
AcuI CTGAAG 1 cut(s) 1508
AfaI GTAC 2 cut(s) 648, 801
AfiI CCNNNNNNNGG 5 cut(s) 351, 352, 416, 422, 960
AflIII ACRYGT 2 cut(s) 643, 1431
AjnI CCWGG 4 cut(s) 415, 658, 1362, 1458
AjuI GAANNNNNNNTTGG 2 cut(s) 117, 149
AluBI AGCT 9 cut(s) 240, 332, 637, 703, 755, 980, 1133, 1300, 1513
AluI AGCT 9 cut(s) 240, 332, 637, 703, 755, 980, 1133, 1300, 1513
Alw21I GWGCWC 2 cut(s) 639, 1087
Alw26I GTCTC 3 cut(s) 519, 1283, 1335
AlwI GGATC 7 cut(s) 145, 218, 357, 370, 469, 650, 1402
AlwNI CAGNNNCTG 1 cut(s) 193
Ama87I CYCGRG 2 cut(s) 632, 698
AoxI GGCC 4 cut(s) 177, 882, 1475, 1572
ApaI GGGCCC 1 cut(s) 886
ApoI RAATTY 3 cut(s) 337, 1262, 1618
Asp700I GAANNNNTTC 1 cut(s) 1266
AspS9I GGNCC 4 cut(s) 36, 882, 883, 963
AsuHPI GGTGA 3 cut(s) 26, 97, 399
AsuII TTCGAA 1 cut(s) 1210
AvaI CYCGRG 2 cut(s) 632, 698
AvaII GGWCC 2 cut(s) 36, 963
AxyI CCTNAGG 1 cut(s) 762
BaeGI GKGCMC 1 cut(s) 886
BalI TGGCCA 1 cut(s) 1574
BamHI GGATCC 1 cut(s) 362
BanII GRGCYC 4 cut(s) 512, 639, 886, 1567
Bbv12I GWGCWC 2 cut(s) 639, 1087
BccI CCATC 6 cut(s) 44, 50, 365, 845, 1525, 1564
BceAI ACGGC 1 cut(s) 530
BciT130I CCWGG 4 cut(s) 417, 660, 1364, 1460
BcoDI GTCTC 3 cut(s) 519, 1283, 1335
BfaI CTAG 3 cut(s) 1029, 1190, 1415
BfmI CTRYAG 2 cut(s) 969, 1034
BglII AGATCT 1 cut(s) 905
Bme1390I CCNGG 4 cut(s) 417, 660, 1364, 1460
Bme18I GGWCC 2 cut(s) 36, 963
BmeT110I CYCGRG 2 cut(s) 632, 698
BmgT120I GGNCC 4 cut(s) 36, 882, 883, 963
BmiI GGNNCC 8 cut(s) 37, 97, 364, 403, 883, 884, 1195, 1387
BmrFI CCNGG 4 cut(s) 417, 660, 1364, 1460
BmrI ACTGGG 1 cut(s) 1198
BmsI GCATC 7 cut(s) 74, 708, 878, 1015, 1016, 1239, 1410
BmuI ACTGGG 1 cut(s) 1198
BpmI CTGGAG 2 cut(s) 348, 1002
Bpu10I CCTNAGC 1 cut(s) 779
Bpu14I TTCGAA 1 cut(s) 1210
BsaAI YACGTR 1 cut(s) 646
BsaBI GATNNNNATC 1 cut(s) 627
BsaJI CCNNGG 4 cut(s) 415, 886, 959, 1362
BsaWI WCCGGW 2 cut(s) 1489, 1622
BsaXI ACNNNNNCTCC 6 cut(s) 45, 51, 75, 81, 1030, 1060
Bsc4I CCNNNNNNNGG 5 cut(s) 351, 352, 416, 422, 960
Bse1I ACTGG 4 cut(s) 451, 1204, 1384, 1456
Bse21I CCTNAGG 1 cut(s) 762
Bse8I GATNNNNATC 1 cut(s) 627
BseBI CCWGG 4 cut(s) 417, 660, 1364, 1460
BseDI CCNNGG 4 cut(s) 415, 886, 959, 1362
BseGI GGATG 1 cut(s) 792
BseJI GATNNNNATC 1 cut(s) 627
BseLI CCNNNNNNNGG 5 cut(s) 351, 352, 416, 422, 960
BseMII CTCAG 6 cut(s) 518, 753, 793, 1184, 1278, 1346
BseNI ACTGG 4 cut(s) 451, 1204, 1384, 1456
BseRI GAGGAG 2 cut(s) 21, 24
BseSI GKGCMC 1 cut(s) 886
BseX3I CGGCCG 1 cut(s) 177
BseYI CCCAGC 2 cut(s) 512, 833
BsgI GTGCAG 3 cut(s) 509, 1334, 1491
Bsh1285I CGRYCG 1 cut(s) 180
BshFI GGCC 4 cut(s) 179, 884, 1477, 1574
BsiEI CGRYCG 1 cut(s) 180
BsiHKAI GWGCWC 2 cut(s) 639, 1087
BsiHKCI CYCGRG 2 cut(s) 632, 698
BsiSI CCGG 3 cut(s) 176, 1490, 1623
BslFI GGGAC 2 cut(s) 49, 391
BslI CCNNNNNNNGG 5 cut(s) 351, 352, 416, 422, 960
BsmAI GTCTC 3 cut(s) 519, 1283, 1335
BsmFI GGGAC 2 cut(s) 49, 391
BsmI GAATGC 2 cut(s) 823, 844
BsnI GGCC 4 cut(s) 179, 884, 1477, 1574
BsoBI CYCGRG 2 cut(s) 632, 698
Bsp119I TTCGAA 1 cut(s) 1210
Bsp120I GGGCCC 1 cut(s) 882
Bsp1286I GDGCHC 5 cut(s) 512, 639, 886, 1087, 1567
Bsp19I CCATGG 1 cut(s) 959
BspACI CCGC 6 cut(s) 290, 580, 784, 930, 947, 1578
BspANI GGCC 4 cut(s) 179, 884, 1477, 1574
BspCNI CTCAG 6 cut(s) 517, 754, 792, 1183, 1279, 1345
BspLI GGNNCC 8 cut(s) 37, 97, 364, 403, 883, 884, 1195, 1387
BspMAI CTGCAG 1 cut(s) 1038
BspPI GGATC 7 cut(s) 145, 218, 357, 370, 469, 650, 1402
BspT104I TTCGAA 1 cut(s) 1210
BsrBI CCGCTC 1 cut(s) 932
BsrI ACTGG 4 cut(s) 451, 1204, 1384, 1456
BssECI CCNNGG 4 cut(s) 415, 886, 959, 1362
BssT1I CCWWGG 2 cut(s) 886, 959
Bst2UI CCWGG 4 cut(s) 417, 660, 1364, 1460
Bst4CI ACNGT 6 cut(s) 109, 133, 232, 265, 1312, 1356
BstAPI GCANNNNNTGC 3 cut(s) 293, 323, 1082
BstBAI YACGTR 1 cut(s) 646
BstBI TTCGAA 1 cut(s) 1210
BstC8I GCNNGC 5 cut(s) 294, 543, 639, 665, 1217
BstDEI CTNAG 6 cut(s) 504, 762, 779, 1170, 1287, 1332
BstDSI CCRYGG 1 cut(s) 959
BstF5I GGATG 1 cut(s) 792
BstMAI GTCTC 3 cut(s) 519, 1283, 1335
BstMCI CGRYCG 1 cut(s) 180
BstNI CCWGG 4 cut(s) 417, 660, 1364, 1460
BstNSI RCATGY 3 cut(s) 778, 1219, 1435
BstSCI CCNGG 4 cut(s) 415, 658, 1362, 1458
BstSFI CTRYAG 2 cut(s) 969, 1034
BstSLI GKGCMC 1 cut(s) 886
BstX2I RGATCY 4 cut(s) 210, 362, 461, 905
BstXI CCANNNNNNTGG 1 cut(s) 242
BstYI RGATCY 4 cut(s) 210, 362, 461, 905
BstZI CGGCCG 1 cut(s) 177
Bsu36I CCTNAGG 1 cut(s) 762
BsuRI GGCC 4 cut(s) 179, 884, 1477, 1574
BtgI CCRYGG 1 cut(s) 959
BtsCI GGATG 1 cut(s) 792
BtsIMutI CAGTG 5 cut(s) 261, 444, 726, 1027, 1449
Cac8I GCNNGC 5 cut(s) 294, 543, 639, 665, 1217
CaiI CAGNNNCTG 1 cut(s) 193
Cfr13I GGNCC 4 cut(s) 36, 882, 883, 963
CseI GACGC 2 cut(s) 179, 285
Csp6I GTAC 2 cut(s) 647, 800
CspCI CAANNNNNGTGG 2 cut(s) 355, 390
CviAII CATG 6 cut(s) 739, 775, 960, 1216, 1432, 1592
CviQI GTAC 2 cut(s) 647, 800
DdeI CTNAG 6 cut(s) 504, 762, 779, 1170, 1287, 1332
EaeI YGGCCR 2 cut(s) 177, 1572
EagI CGGCCG 1 cut(s) 177
EciI GGCGGA 1 cut(s) 799
Ecl136II GAGCTC 1 cut(s) 637
EclXI CGGCCG 1 cut(s) 177
Eco130I CCWWGG 2 cut(s) 886, 959
Eco147I AGGCCT 1 cut(s) 1477
Eco24I GRGCYC 4 cut(s) 512, 639, 886, 1567
Eco47I GGWCC 2 cut(s) 36, 963
Eco52I CGGCCG 1 cut(s) 177
Eco53kI GAGCTC 1 cut(s) 637
Eco57I CTGAAG 1 cut(s) 1508
Eco81I CCTNAGG 1 cut(s) 762
Eco88I CYCGRG 2 cut(s) 632, 698
EcoICRI GAGCTC 1 cut(s) 637
EcoO109I RGGNCCY 2 cut(s) 36, 882
EcoRI GAATTC 1 cut(s) 1618
EcoRII CCWGG 4 cut(s) 415, 658, 1362, 1458
EcoT14I CCWWGG 2 cut(s) 886, 959
EcoT38I GRGCYC 4 cut(s) 512, 639, 886, 1567
ErhI CCWWGG 2 cut(s) 886, 959
FaeI CATG 6 cut(s) 742, 778, 963, 1219, 1435, 1595
FaqI GGGAC 2 cut(s) 49, 391
FatI CATG 6 cut(s) 738, 774, 959, 1215, 1431, 1591
FauI CCCGC 2 cut(s) 937, 954
FokI GGATG 1 cut(s) 799
FriOI GRGCYC 4 cut(s) 512, 639, 886, 1567
FspBI CTAG 3 cut(s) 1029, 1190, 1415
GsaI CCCAGC 2 cut(s) 516, 837
GsuI CTGGAG 2 cut(s) 348, 1002
HaeIII GGCC 4 cut(s) 179, 884, 1477, 1574
HapII CCGG 3 cut(s) 176, 1490, 1623
HgaI GACGC 2 cut(s) 179, 285
Hin1II CATG 6 cut(s) 742, 778, 963, 1219, 1435, 1595
HincII GTYRAC 3 cut(s) 70, 76, 1359
HindII GTYRAC 3 cut(s) 70, 76, 1359
HinfI GANTC 9 cut(s) 60, 125, 420, 502, 911, 1012, 1111, 1186, 1223
HpaII CCGG 3 cut(s) 176, 1490, 1623
HphI GGTGA 3 cut(s) 26, 97, 399
Hpy166II GTNNAC 6 cut(s) 28, 70, 76, 105, 268, 1359
Hpy188III TCNNGA 7 cut(s) 473, 632, 761, 1064, 1286, 1306, 1526
Hpy8I GTNNAC 6 cut(s) 28, 70, 76, 105, 268, 1359
Hpy99I CGWCG 2 cut(s) 35, 50
HpyCH4III ACNGT 6 cut(s) 109, 133, 232, 265, 1312, 1356
HpyCH4IV ACGT 5 cut(s) 72, 78, 645, 798, 1587
HpyF3I CTNAG 6 cut(s) 504, 762, 779, 1170, 1287, 1332
HpySE526I ACGT 5 cut(s) 72, 78, 645, 798, 1587
Hsp92II CATG 6 cut(s) 742, 778, 963, 1219, 1435, 1595
LmnI GCTCC 6 cut(s) 92, 101, 329, 401, 672, 937
LweI GCATC 7 cut(s) 74, 708, 878, 1015, 1016, 1239, 1410
MaeI CTAG 3 cut(s) 1029, 1190, 1415
MaeII ACGT 5 cut(s) 72, 78, 645, 798, 1587
MaeIII GTNAC 1 cut(s) 722
MbiI CCGCTC 1 cut(s) 932
MboII GAAGA 2 cut(s) 1259, 1505
MfeI CAATTG 1 cut(s) 497
MflI RGATCY 4 cut(s) 210, 362, 461, 905
MhlI GDGCHC 5 cut(s) 512, 639, 886, 1087, 1567
MlsI TGGCCA 1 cut(s) 1574
MluCI AATT 7 cut(s) 337, 497, 615, 1102, 1228, 1262, 1618
MluNI TGGCCA 1 cut(s) 1574
MlyI GAGTC 3 cut(s) 69, 414, 496
MmeI TCCRAC 5 cut(s) 69, 115, 188, 340, 1221
Mox20I TGGCCA 1 cut(s) 1574
MroXI GAANNNNTTC 1 cut(s) 1266
MscI TGGCCA 1 cut(s) 1574
MseI TTAA 7 cut(s) 117, 215, 429, 651, 771, 1056, 1238
MslI CAYNNNNRTG 1 cut(s) 163
Msp20I TGGCCA 1 cut(s) 1574
MspA1I CMGCKG 3 cut(s) 980, 1133, 1300
MspI CCGG 3 cut(s) 176, 1490, 1623
MspR9I CCNGG 4 cut(s) 417, 660, 1364, 1460
MunI CAATTG 1 cut(s) 497
Mva1269I GAATGC 2 cut(s) 823, 844
MvaI CCWGG 4 cut(s) 417, 660, 1364, 1460
NcoI CCATGG 1 cut(s) 959
NlaIII CATG 6 cut(s) 742, 778, 963, 1219, 1435, 1595
NlaIV GGNNCC 8 cut(s) 37, 97, 364, 403, 883, 884, 1195, 1387
NspI RCATGY 3 cut(s) 778, 1219, 1435
NspV TTCGAA 1 cut(s) 1210
PaeI GCATGC 1 cut(s) 1219
PceI AGGCCT 1 cut(s) 1477
PciI ACATGT 1 cut(s) 1431
PcsI WCGNNNNNNNCGW 2 cut(s) 129, 228
PctI GAATGC 2 cut(s) 823, 844
PdmI GAANNNNTTC 1 cut(s) 1266
PfeI GAWTC 6 cut(s) 125, 911, 1012, 1111, 1186, 1223
PflMI CCANNNNNTGG 1 cut(s) 960
PleI GAGTC 3 cut(s) 68, 414, 496
PpsI GAGTC 3 cut(s) 68, 414, 496
Ppu21I YACGTR 1 cut(s) 646
PpuMI RGGWCCY 1 cut(s) 36
PscI ACATGT 1 cut(s) 1431
Psp124BI GAGCTC 1 cut(s) 639
Psp5II RGGWCCY 1 cut(s) 36
Psp6I CCWGG 4 cut(s) 415, 658, 1362, 1458
PspFI CCCAGC 2 cut(s) 512, 833
PspGI CCWGG 4 cut(s) 415, 658, 1362, 1458
PspN4I GGNNCC 8 cut(s) 37, 97, 364, 403, 883, 884, 1195, 1387
PspOMI GGGCCC 1 cut(s) 882
PspPI GGNCC 4 cut(s) 36, 882, 883, 963
PspPPI RGGWCCY 1 cut(s) 36
PstI CTGCAG 1 cut(s) 1038
PstNI CAGNNNCTG 1 cut(s) 193
PsuI RGATCY 4 cut(s) 210, 362, 461, 905
PvuII CAGCTG 3 cut(s) 980, 1133, 1300
RsaI GTAC 2 cut(s) 648, 801
RsaNI GTAC 2 cut(s) 647, 800
RseI CAYNNNNRTG 1 cut(s) 163
SacI GAGCTC 1 cut(s) 639
SaqAI TTAA 7 cut(s) 117, 215, 429, 651, 771, 1056, 1238
Sau96I GGNCC 4 cut(s) 36, 882, 883, 963
SchI GAGTC 3 cut(s) 69, 414, 496
ScrFI CCNGG 4 cut(s) 417, 660, 1364, 1460
SduI GDGCHC 5 cut(s) 512, 639, 886, 1087, 1567
SfaNI GCATC 7 cut(s) 74, 708, 878, 1015, 1016, 1239, 1410
SfcI CTRYAG 2 cut(s) 969, 1034
SfuI TTCGAA 1 cut(s) 1210
SinI GGWCC 2 cut(s) 36, 963
SmiMI CAYNNNNRTG 1 cut(s) 163
SphI GCATGC 1 cut(s) 1219
Sse9I AATT 7 cut(s) 337, 497, 615, 1102, 1228, 1262, 1618
SseBI AGGCCT 1 cut(s) 1477
SsiI CCGC 6 cut(s) 290, 580, 784, 930, 947, 1578
SspMI CTAG 3 cut(s) 1029, 1190, 1415
SstI GAGCTC 1 cut(s) 639
StuI AGGCCT 1 cut(s) 1477
StyD4I CCNGG 4 cut(s) 415, 658, 1362, 1458
StyI CCWWGG 2 cut(s) 886, 959
TaaI ACNGT 6 cut(s) 109, 133, 232, 265, 1312, 1356
TaiI ACGT 5 cut(s) 75, 81, 648, 801, 1590
TaqI TCGA 4 cut(s) 123, 625, 1010, 1210
TaqII GACCGA 1 cut(s) 1560
TasI AATT 7 cut(s) 337, 497, 615, 1102, 1228, 1262, 1618
TfiI GAWTC 6 cut(s) 125, 911, 1012, 1111, 1186, 1223
Tru1I TTAA 7 cut(s) 117, 215, 429, 651, 771, 1056, 1238
Tru9I TTAA 7 cut(s) 117, 215, 429, 651, 771, 1056, 1238
TscAI CASTG 5 cut(s) 268, 451, 733, 1027, 1456
TspDTI ATGAA 9 cut(s) 548, 575, 608, 807, 830, 932, 1124, 1193, 1442
TspGWI ACGGA 1 cut(s) 659
TspRI CASTG 5 cut(s) 268, 451, 733, 1027, 1456
Van91I CCANNNNNTGG 1 cut(s) 960
VpaK11BI GGWCC 2 cut(s) 36, 963
XapI RAATTY 3 cut(s) 337, 1262, 1618
XceI RCATGY 3 cut(s) 778, 1219, 1435
XmnI GAANNNNTTC 1 cut(s) 1266
XspI CTAG 3 cut(s) 1029, 1190, 1415
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.