Ubiquitin domain-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_1g10501 FvH4_1g10501 FvH4_1g10501 FvH4_1g10501 |
| malus_domestica | MD02G1118900.v1.1 MD15G1232900.v1.1 |
| prunus_persica | Prupe.7G181000_v2.0.a1 Prupe.7G181000_v2.0.a1 Prupe.7G181000_v2.0.a1 |
| pyrus_communis | pycom15g20740 |
| rosa_chinensis | RchiOBHm_Chr2g0097401 RchiOBHm_Chr2g0097491 |
| rosa_laevigata | RLG00000016723 |
| rosa_roxburghii | Rroxscaffold_2G00144720 |
| rosa_rugosa | Rorug02G0066300 Rorug02G0066400 Rorug02G0066500 Rorug02G0066600 Rorug02G0066700 Rorug02G0066700 |
| rosa_samantha | Rh2AG113000 Rh2BG116000 Rh2CG118000 Rh2DG117100 |
| rosa_wichuraiana | Rw2G008850 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 960 |
| AccBSI | CCGCTC | 1 cut(s) | 932 |
| AciI | CCGC | 6 cut(s) | 290, 580, 784, 930, 947, 1578 |
| AclWI | GGATC | 7 cut(s) | 145, 218, 357, 370, 469, 650, 1402 |
| AcoI | YGGCCR | 2 cut(s) | 177, 1572 |
| AcsI | RAATTY | 3 cut(s) | 337, 1262, 1618 |
| AcuI | CTGAAG | 1 cut(s) | 1508 |
| AfaI | GTAC | 2 cut(s) | 648, 801 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 351, 352, 416, 422, 960 |
| AflIII | ACRYGT | 2 cut(s) | 643, 1431 |
| AjnI | CCWGG | 4 cut(s) | 415, 658, 1362, 1458 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 117, 149 |
| AluBI | AGCT | 9 cut(s) | 240, 332, 637, 703, 755, 980, 1133, 1300, 1513 |
| AluI | AGCT | 9 cut(s) | 240, 332, 637, 703, 755, 980, 1133, 1300, 1513 |
| Alw21I | GWGCWC | 2 cut(s) | 639, 1087 |
| Alw26I | GTCTC | 3 cut(s) | 519, 1283, 1335 |
| AlwI | GGATC | 7 cut(s) | 145, 218, 357, 370, 469, 650, 1402 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 193 |
| Ama87I | CYCGRG | 2 cut(s) | 632, 698 |
| AoxI | GGCC | 4 cut(s) | 177, 882, 1475, 1572 |
| ApaI | GGGCCC | 1 cut(s) | 886 |
| ApoI | RAATTY | 3 cut(s) | 337, 1262, 1618 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1266 |
| AspS9I | GGNCC | 4 cut(s) | 36, 882, 883, 963 |
| AsuHPI | GGTGA | 3 cut(s) | 26, 97, 399 |
| AsuII | TTCGAA | 1 cut(s) | 1210 |
| AvaI | CYCGRG | 2 cut(s) | 632, 698 |
| AvaII | GGWCC | 2 cut(s) | 36, 963 |
| AxyI | CCTNAGG | 1 cut(s) | 762 |
| BaeGI | GKGCMC | 1 cut(s) | 886 |
| BalI | TGGCCA | 1 cut(s) | 1574 |
| BamHI | GGATCC | 1 cut(s) | 362 |
| BanII | GRGCYC | 4 cut(s) | 512, 639, 886, 1567 |
| Bbv12I | GWGCWC | 2 cut(s) | 639, 1087 |
| BccI | CCATC | 6 cut(s) | 44, 50, 365, 845, 1525, 1564 |
| BceAI | ACGGC | 1 cut(s) | 530 |
| BciT130I | CCWGG | 4 cut(s) | 417, 660, 1364, 1460 |
| BcoDI | GTCTC | 3 cut(s) | 519, 1283, 1335 |
| BfaI | CTAG | 3 cut(s) | 1029, 1190, 1415 |
| BfmI | CTRYAG | 2 cut(s) | 969, 1034 |
| BglII | AGATCT | 1 cut(s) | 905 |
| Bme1390I | CCNGG | 4 cut(s) | 417, 660, 1364, 1460 |
| Bme18I | GGWCC | 2 cut(s) | 36, 963 |
| BmeT110I | CYCGRG | 2 cut(s) | 632, 698 |
| BmgT120I | GGNCC | 4 cut(s) | 36, 882, 883, 963 |
| BmiI | GGNNCC | 8 cut(s) | 37, 97, 364, 403, 883, 884, 1195, 1387 |
| BmrFI | CCNGG | 4 cut(s) | 417, 660, 1364, 1460 |
| BmrI | ACTGGG | 1 cut(s) | 1198 |
| BmsI | GCATC | 7 cut(s) | 74, 708, 878, 1015, 1016, 1239, 1410 |
| BmuI | ACTGGG | 1 cut(s) | 1198 |
| BpmI | CTGGAG | 2 cut(s) | 348, 1002 |
| Bpu10I | CCTNAGC | 1 cut(s) | 779 |
| Bpu14I | TTCGAA | 1 cut(s) | 1210 |
| BsaAI | YACGTR | 1 cut(s) | 646 |
| BsaBI | GATNNNNATC | 1 cut(s) | 627 |
| BsaJI | CCNNGG | 4 cut(s) | 415, 886, 959, 1362 |
| BsaWI | WCCGGW | 2 cut(s) | 1489, 1622 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 45, 51, 75, 81, 1030, 1060 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 351, 352, 416, 422, 960 |
| Bse1I | ACTGG | 4 cut(s) | 451, 1204, 1384, 1456 |
| Bse21I | CCTNAGG | 1 cut(s) | 762 |
| Bse8I | GATNNNNATC | 1 cut(s) | 627 |
| BseBI | CCWGG | 4 cut(s) | 417, 660, 1364, 1460 |
| BseDI | CCNNGG | 4 cut(s) | 415, 886, 959, 1362 |
| BseGI | GGATG | 1 cut(s) | 792 |
| BseJI | GATNNNNATC | 1 cut(s) | 627 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 351, 352, 416, 422, 960 |
| BseMII | CTCAG | 6 cut(s) | 518, 753, 793, 1184, 1278, 1346 |
| BseNI | ACTGG | 4 cut(s) | 451, 1204, 1384, 1456 |
| BseRI | GAGGAG | 2 cut(s) | 21, 24 |
| BseSI | GKGCMC | 1 cut(s) | 886 |
| BseX3I | CGGCCG | 1 cut(s) | 177 |
| BseYI | CCCAGC | 2 cut(s) | 512, 833 |
| BsgI | GTGCAG | 3 cut(s) | 509, 1334, 1491 |
| Bsh1285I | CGRYCG | 1 cut(s) | 180 |
| BshFI | GGCC | 4 cut(s) | 179, 884, 1477, 1574 |
| BsiEI | CGRYCG | 1 cut(s) | 180 |
| BsiHKAI | GWGCWC | 2 cut(s) | 639, 1087 |
| BsiHKCI | CYCGRG | 2 cut(s) | 632, 698 |
| BsiSI | CCGG | 3 cut(s) | 176, 1490, 1623 |
| BslFI | GGGAC | 2 cut(s) | 49, 391 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 351, 352, 416, 422, 960 |
| BsmAI | GTCTC | 3 cut(s) | 519, 1283, 1335 |
| BsmFI | GGGAC | 2 cut(s) | 49, 391 |
| BsmI | GAATGC | 2 cut(s) | 823, 844 |
| BsnI | GGCC | 4 cut(s) | 179, 884, 1477, 1574 |
| BsoBI | CYCGRG | 2 cut(s) | 632, 698 |
| Bsp119I | TTCGAA | 1 cut(s) | 1210 |
| Bsp120I | GGGCCC | 1 cut(s) | 882 |
| Bsp1286I | GDGCHC | 5 cut(s) | 512, 639, 886, 1087, 1567 |
| Bsp19I | CCATGG | 1 cut(s) | 959 |
| BspACI | CCGC | 6 cut(s) | 290, 580, 784, 930, 947, 1578 |
| BspANI | GGCC | 4 cut(s) | 179, 884, 1477, 1574 |
| BspCNI | CTCAG | 6 cut(s) | 517, 754, 792, 1183, 1279, 1345 |
| BspLI | GGNNCC | 8 cut(s) | 37, 97, 364, 403, 883, 884, 1195, 1387 |
| BspMAI | CTGCAG | 1 cut(s) | 1038 |
| BspPI | GGATC | 7 cut(s) | 145, 218, 357, 370, 469, 650, 1402 |
| BspT104I | TTCGAA | 1 cut(s) | 1210 |
| BsrBI | CCGCTC | 1 cut(s) | 932 |
| BsrI | ACTGG | 4 cut(s) | 451, 1204, 1384, 1456 |
| BssECI | CCNNGG | 4 cut(s) | 415, 886, 959, 1362 |
| BssT1I | CCWWGG | 2 cut(s) | 886, 959 |
| Bst2UI | CCWGG | 4 cut(s) | 417, 660, 1364, 1460 |
| Bst4CI | ACNGT | 6 cut(s) | 109, 133, 232, 265, 1312, 1356 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 293, 323, 1082 |
| BstBAI | YACGTR | 1 cut(s) | 646 |
| BstBI | TTCGAA | 1 cut(s) | 1210 |
| BstC8I | GCNNGC | 5 cut(s) | 294, 543, 639, 665, 1217 |
| BstDEI | CTNAG | 6 cut(s) | 504, 762, 779, 1170, 1287, 1332 |
| BstDSI | CCRYGG | 1 cut(s) | 959 |
| BstF5I | GGATG | 1 cut(s) | 792 |
| BstMAI | GTCTC | 3 cut(s) | 519, 1283, 1335 |
| BstMCI | CGRYCG | 1 cut(s) | 180 |
| BstNI | CCWGG | 4 cut(s) | 417, 660, 1364, 1460 |
| BstNSI | RCATGY | 3 cut(s) | 778, 1219, 1435 |
| BstSCI | CCNGG | 4 cut(s) | 415, 658, 1362, 1458 |
| BstSFI | CTRYAG | 2 cut(s) | 969, 1034 |
| BstSLI | GKGCMC | 1 cut(s) | 886 |
| BstX2I | RGATCY | 4 cut(s) | 210, 362, 461, 905 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 242 |
| BstYI | RGATCY | 4 cut(s) | 210, 362, 461, 905 |
| BstZI | CGGCCG | 1 cut(s) | 177 |
| Bsu36I | CCTNAGG | 1 cut(s) | 762 |
| BsuRI | GGCC | 4 cut(s) | 179, 884, 1477, 1574 |
| BtgI | CCRYGG | 1 cut(s) | 959 |
| BtsCI | GGATG | 1 cut(s) | 792 |
| BtsIMutI | CAGTG | 5 cut(s) | 261, 444, 726, 1027, 1449 |
| Cac8I | GCNNGC | 5 cut(s) | 294, 543, 639, 665, 1217 |
| CaiI | CAGNNNCTG | 1 cut(s) | 193 |
| Cfr13I | GGNCC | 4 cut(s) | 36, 882, 883, 963 |
| CseI | GACGC | 2 cut(s) | 179, 285 |
| Csp6I | GTAC | 2 cut(s) | 647, 800 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 355, 390 |
| CviAII | CATG | 6 cut(s) | 739, 775, 960, 1216, 1432, 1592 |
| CviQI | GTAC | 2 cut(s) | 647, 800 |
| DdeI | CTNAG | 6 cut(s) | 504, 762, 779, 1170, 1287, 1332 |
| EaeI | YGGCCR | 2 cut(s) | 177, 1572 |
| EagI | CGGCCG | 1 cut(s) | 177 |
| EciI | GGCGGA | 1 cut(s) | 799 |
| Ecl136II | GAGCTC | 1 cut(s) | 637 |
| EclXI | CGGCCG | 1 cut(s) | 177 |
| Eco130I | CCWWGG | 2 cut(s) | 886, 959 |
| Eco147I | AGGCCT | 1 cut(s) | 1477 |
| Eco24I | GRGCYC | 4 cut(s) | 512, 639, 886, 1567 |
| Eco47I | GGWCC | 2 cut(s) | 36, 963 |
| Eco52I | CGGCCG | 1 cut(s) | 177 |
| Eco53kI | GAGCTC | 1 cut(s) | 637 |
| Eco57I | CTGAAG | 1 cut(s) | 1508 |
| Eco81I | CCTNAGG | 1 cut(s) | 762 |
| Eco88I | CYCGRG | 2 cut(s) | 632, 698 |
| EcoICRI | GAGCTC | 1 cut(s) | 637 |
| EcoO109I | RGGNCCY | 2 cut(s) | 36, 882 |
| EcoRI | GAATTC | 1 cut(s) | 1618 |
| EcoRII | CCWGG | 4 cut(s) | 415, 658, 1362, 1458 |
| EcoT14I | CCWWGG | 2 cut(s) | 886, 959 |
| EcoT38I | GRGCYC | 4 cut(s) | 512, 639, 886, 1567 |
| ErhI | CCWWGG | 2 cut(s) | 886, 959 |
| FaeI | CATG | 6 cut(s) | 742, 778, 963, 1219, 1435, 1595 |
| FaqI | GGGAC | 2 cut(s) | 49, 391 |
| FatI | CATG | 6 cut(s) | 738, 774, 959, 1215, 1431, 1591 |
| FauI | CCCGC | 2 cut(s) | 937, 954 |
| FokI | GGATG | 1 cut(s) | 799 |
| FriOI | GRGCYC | 4 cut(s) | 512, 639, 886, 1567 |
| FspBI | CTAG | 3 cut(s) | 1029, 1190, 1415 |
| GsaI | CCCAGC | 2 cut(s) | 516, 837 |
| GsuI | CTGGAG | 2 cut(s) | 348, 1002 |
| HaeIII | GGCC | 4 cut(s) | 179, 884, 1477, 1574 |
| HapII | CCGG | 3 cut(s) | 176, 1490, 1623 |
| HgaI | GACGC | 2 cut(s) | 179, 285 |
| Hin1II | CATG | 6 cut(s) | 742, 778, 963, 1219, 1435, 1595 |
| HincII | GTYRAC | 3 cut(s) | 70, 76, 1359 |
| HindII | GTYRAC | 3 cut(s) | 70, 76, 1359 |
| HinfI | GANTC | 9 cut(s) | 60, 125, 420, 502, 911, 1012, 1111, 1186, 1223 |
| HpaII | CCGG | 3 cut(s) | 176, 1490, 1623 |
| HphI | GGTGA | 3 cut(s) | 26, 97, 399 |
| Hpy166II | GTNNAC | 6 cut(s) | 28, 70, 76, 105, 268, 1359 |
| Hpy188III | TCNNGA | 7 cut(s) | 473, 632, 761, 1064, 1286, 1306, 1526 |
| Hpy8I | GTNNAC | 6 cut(s) | 28, 70, 76, 105, 268, 1359 |
| Hpy99I | CGWCG | 2 cut(s) | 35, 50 |
| HpyCH4III | ACNGT | 6 cut(s) | 109, 133, 232, 265, 1312, 1356 |
| HpyCH4IV | ACGT | 5 cut(s) | 72, 78, 645, 798, 1587 |
| HpyF3I | CTNAG | 6 cut(s) | 504, 762, 779, 1170, 1287, 1332 |
| HpySE526I | ACGT | 5 cut(s) | 72, 78, 645, 798, 1587 |
| Hsp92II | CATG | 6 cut(s) | 742, 778, 963, 1219, 1435, 1595 |
| LmnI | GCTCC | 6 cut(s) | 92, 101, 329, 401, 672, 937 |
| LweI | GCATC | 7 cut(s) | 74, 708, 878, 1015, 1016, 1239, 1410 |
| MaeI | CTAG | 3 cut(s) | 1029, 1190, 1415 |
| MaeII | ACGT | 5 cut(s) | 72, 78, 645, 798, 1587 |
| MaeIII | GTNAC | 1 cut(s) | 722 |
| MbiI | CCGCTC | 1 cut(s) | 932 |
| MboII | GAAGA | 2 cut(s) | 1259, 1505 |
| MfeI | CAATTG | 1 cut(s) | 497 |
| MflI | RGATCY | 4 cut(s) | 210, 362, 461, 905 |
| MhlI | GDGCHC | 5 cut(s) | 512, 639, 886, 1087, 1567 |
| MlsI | TGGCCA | 1 cut(s) | 1574 |
| MluCI | AATT | 7 cut(s) | 337, 497, 615, 1102, 1228, 1262, 1618 |
| MluNI | TGGCCA | 1 cut(s) | 1574 |
| MlyI | GAGTC | 3 cut(s) | 69, 414, 496 |
| MmeI | TCCRAC | 5 cut(s) | 69, 115, 188, 340, 1221 |
| Mox20I | TGGCCA | 1 cut(s) | 1574 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1266 |
| MscI | TGGCCA | 1 cut(s) | 1574 |
| MseI | TTAA | 7 cut(s) | 117, 215, 429, 651, 771, 1056, 1238 |
| MslI | CAYNNNNRTG | 1 cut(s) | 163 |
| Msp20I | TGGCCA | 1 cut(s) | 1574 |
| MspA1I | CMGCKG | 3 cut(s) | 980, 1133, 1300 |
| MspI | CCGG | 3 cut(s) | 176, 1490, 1623 |
| MspR9I | CCNGG | 4 cut(s) | 417, 660, 1364, 1460 |
| MunI | CAATTG | 1 cut(s) | 497 |
| Mva1269I | GAATGC | 2 cut(s) | 823, 844 |
| MvaI | CCWGG | 4 cut(s) | 417, 660, 1364, 1460 |
| NcoI | CCATGG | 1 cut(s) | 959 |
| NlaIII | CATG | 6 cut(s) | 742, 778, 963, 1219, 1435, 1595 |
| NlaIV | GGNNCC | 8 cut(s) | 37, 97, 364, 403, 883, 884, 1195, 1387 |
| NspI | RCATGY | 3 cut(s) | 778, 1219, 1435 |
| NspV | TTCGAA | 1 cut(s) | 1210 |
| PaeI | GCATGC | 1 cut(s) | 1219 |
| PceI | AGGCCT | 1 cut(s) | 1477 |
| PciI | ACATGT | 1 cut(s) | 1431 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 129, 228 |
| PctI | GAATGC | 2 cut(s) | 823, 844 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1266 |
| PfeI | GAWTC | 6 cut(s) | 125, 911, 1012, 1111, 1186, 1223 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 960 |
| PleI | GAGTC | 3 cut(s) | 68, 414, 496 |
| PpsI | GAGTC | 3 cut(s) | 68, 414, 496 |
| Ppu21I | YACGTR | 1 cut(s) | 646 |
| PpuMI | RGGWCCY | 1 cut(s) | 36 |
| PscI | ACATGT | 1 cut(s) | 1431 |
| Psp124BI | GAGCTC | 1 cut(s) | 639 |
| Psp5II | RGGWCCY | 1 cut(s) | 36 |
| Psp6I | CCWGG | 4 cut(s) | 415, 658, 1362, 1458 |
| PspFI | CCCAGC | 2 cut(s) | 512, 833 |
| PspGI | CCWGG | 4 cut(s) | 415, 658, 1362, 1458 |
| PspN4I | GGNNCC | 8 cut(s) | 37, 97, 364, 403, 883, 884, 1195, 1387 |
| PspOMI | GGGCCC | 1 cut(s) | 882 |
| PspPI | GGNCC | 4 cut(s) | 36, 882, 883, 963 |
| PspPPI | RGGWCCY | 1 cut(s) | 36 |
| PstI | CTGCAG | 1 cut(s) | 1038 |
| PstNI | CAGNNNCTG | 1 cut(s) | 193 |
| PsuI | RGATCY | 4 cut(s) | 210, 362, 461, 905 |
| PvuII | CAGCTG | 3 cut(s) | 980, 1133, 1300 |
| RsaI | GTAC | 2 cut(s) | 648, 801 |
| RsaNI | GTAC | 2 cut(s) | 647, 800 |
| RseI | CAYNNNNRTG | 1 cut(s) | 163 |
| SacI | GAGCTC | 1 cut(s) | 639 |
| SaqAI | TTAA | 7 cut(s) | 117, 215, 429, 651, 771, 1056, 1238 |
| Sau96I | GGNCC | 4 cut(s) | 36, 882, 883, 963 |
| SchI | GAGTC | 3 cut(s) | 69, 414, 496 |
| ScrFI | CCNGG | 4 cut(s) | 417, 660, 1364, 1460 |
| SduI | GDGCHC | 5 cut(s) | 512, 639, 886, 1087, 1567 |
| SfaNI | GCATC | 7 cut(s) | 74, 708, 878, 1015, 1016, 1239, 1410 |
| SfcI | CTRYAG | 2 cut(s) | 969, 1034 |
| SfuI | TTCGAA | 1 cut(s) | 1210 |
| SinI | GGWCC | 2 cut(s) | 36, 963 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 163 |
| SphI | GCATGC | 1 cut(s) | 1219 |
| Sse9I | AATT | 7 cut(s) | 337, 497, 615, 1102, 1228, 1262, 1618 |
| SseBI | AGGCCT | 1 cut(s) | 1477 |
| SsiI | CCGC | 6 cut(s) | 290, 580, 784, 930, 947, 1578 |
| SspMI | CTAG | 3 cut(s) | 1029, 1190, 1415 |
| SstI | GAGCTC | 1 cut(s) | 639 |
| StuI | AGGCCT | 1 cut(s) | 1477 |
| StyD4I | CCNGG | 4 cut(s) | 415, 658, 1362, 1458 |
| StyI | CCWWGG | 2 cut(s) | 886, 959 |
| TaaI | ACNGT | 6 cut(s) | 109, 133, 232, 265, 1312, 1356 |
| TaiI | ACGT | 5 cut(s) | 75, 81, 648, 801, 1590 |
| TaqI | TCGA | 4 cut(s) | 123, 625, 1010, 1210 |
| TaqII | GACCGA | 1 cut(s) | 1560 |
| TasI | AATT | 7 cut(s) | 337, 497, 615, 1102, 1228, 1262, 1618 |
| TfiI | GAWTC | 6 cut(s) | 125, 911, 1012, 1111, 1186, 1223 |
| Tru1I | TTAA | 7 cut(s) | 117, 215, 429, 651, 771, 1056, 1238 |
| Tru9I | TTAA | 7 cut(s) | 117, 215, 429, 651, 771, 1056, 1238 |
| TscAI | CASTG | 5 cut(s) | 268, 451, 733, 1027, 1456 |
| TspDTI | ATGAA | 9 cut(s) | 548, 575, 608, 807, 830, 932, 1124, 1193, 1442 |
| TspGWI | ACGGA | 1 cut(s) | 659 |
| TspRI | CASTG | 5 cut(s) | 268, 451, 733, 1027, 1456 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 960 |
| VpaK11BI | GGWCC | 2 cut(s) | 36, 963 |
| XapI | RAATTY | 3 cut(s) | 337, 1262, 1618 |
| XceI | RCATGY | 3 cut(s) | 778, 1219, 1435 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1266 |
| XspI | CTAG | 3 cut(s) | 1029, 1190, 1415 |